data_3B5I
#
_model_server_result.job_id            3NqF-0Pd20S34mdebm5n7g 
_model_server_result.datetime_utc      '2024-11-14 20:47:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3b5i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    3B5I 
#
_exptl.entry_id    3B5I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.3 
_cell.angle_gamma         90 
_cell.entry_id            3B5I 
_cell.length_a            67.27 
_cell.length_b            129.4 
_cell.length_c            68.33 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3B5I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     3B5I 
_atom_sites.fract_transf_matrix[1][1]    0.014865 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006097 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007728 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 401 401 SAH SAH . 
D 3 MG A 1 601 601 MG MG . 
E 2 SAH B 1 401 401 SAH SAH . 
F 3 MG B 1 601 601 MG MG . 
G 4 HOH A 1 602 602 HOH HOH . 
G 4 HOH A 2 603 603 HOH HOH . 
G 4 HOH A 3 604 604 HOH HOH . 
G 4 HOH A 4 605 605 HOH HOH . 
G 4 HOH A 5 606 606 HOH HOH . 
G 4 HOH A 6 607 607 HOH HOH . 
G 4 HOH A 7 608 608 HOH HOH . 
G 4 HOH A 8 609 609 HOH HOH . 
G 4 HOH A 9 610 610 HOH HOH . 
G 4 HOH A 10 611 611 HOH HOH . 
G 4 HOH A 11 612 612 HOH HOH . 
G 4 HOH A 12 613 613 HOH HOH . 
G 4 HOH A 13 614 614 HOH HOH . 
G 4 HOH A 14 615 615 HOH HOH . 
G 4 HOH A 15 616 616 HOH HOH . 
G 4 HOH A 16 617 617 HOH HOH . 
G 4 HOH A 17 618 618 HOH HOH . 
G 4 HOH A 18 619 619 HOH HOH . 
G 4 HOH A 19 620 620 HOH HOH . 
G 4 HOH A 20 621 621 HOH HOH . 
G 4 HOH A 21 622 622 HOH HOH . 
G 4 HOH A 22 623 623 HOH HOH . 
G 4 HOH A 23 624 624 HOH HOH . 
G 4 HOH A 24 625 625 HOH HOH . 
G 4 HOH A 25 626 626 HOH HOH . 
G 4 HOH A 26 627 627 HOH HOH . 
G 4 HOH A 27 628 628 HOH HOH . 
G 4 HOH A 28 629 629 HOH HOH . 
G 4 HOH A 29 630 630 HOH HOH . 
G 4 HOH A 30 631 631 HOH HOH . 
G 4 HOH A 31 632 632 HOH HOH . 
G 4 HOH A 32 633 633 HOH HOH . 
G 4 HOH A 33 634 634 HOH HOH . 
G 4 HOH A 34 635 635 HOH HOH . 
G 4 HOH A 35 636 636 HOH HOH . 
G 4 HOH A 36 637 637 HOH HOH . 
G 4 HOH A 37 638 638 HOH HOH . 
G 4 HOH A 38 639 639 HOH HOH . 
G 4 HOH A 39 640 640 HOH HOH . 
G 4 HOH A 40 641 641 HOH HOH . 
G 4 HOH A 41 642 642 HOH HOH . 
G 4 HOH A 42 643 643 HOH HOH . 
G 4 HOH A 43 644 644 HOH HOH . 
G 4 HOH A 44 645 645 HOH HOH . 
G 4 HOH A 45 646 646 HOH HOH . 
G 4 HOH A 46 647 647 HOH HOH . 
G 4 HOH A 47 648 648 HOH HOH . 
G 4 HOH A 48 649 649 HOH HOH . 
G 4 HOH A 49 650 650 HOH HOH . 
G 4 HOH A 50 651 651 HOH HOH . 
G 4 HOH A 51 652 652 HOH HOH . 
G 4 HOH A 52 653 653 HOH HOH . 
G 4 HOH A 53 654 654 HOH HOH . 
G 4 HOH A 54 655 655 HOH HOH . 
G 4 HOH A 55 657 657 HOH HOH . 
G 4 HOH A 56 658 658 HOH HOH . 
G 4 HOH A 57 659 659 HOH HOH . 
G 4 HOH A 58 660 660 HOH HOH . 
G 4 HOH A 59 661 661 HOH HOH . 
G 4 HOH A 60 662 662 HOH HOH . 
G 4 HOH A 61 663 663 HOH HOH . 
G 4 HOH A 62 664 664 HOH HOH . 
G 4 HOH A 63 665 665 HOH HOH . 
G 4 HOH A 64 666 666 HOH HOH . 
G 4 HOH A 65 667 667 HOH HOH . 
G 4 HOH A 66 668 668 HOH HOH . 
G 4 HOH A 67 669 669 HOH HOH . 
G 4 HOH A 68 670 670 HOH HOH . 
G 4 HOH A 69 671 671 HOH HOH . 
G 4 HOH A 70 672 672 HOH HOH . 
G 4 HOH A 71 673 673 HOH HOH . 
G 4 HOH A 72 674 674 HOH HOH . 
H 4 HOH B 1 616 616 HOH HOH . 
H 4 HOH B 2 617 617 HOH HOH . 
H 4 HOH B 3 618 618 HOH HOH . 
H 4 HOH B 4 619 619 HOH HOH . 
H 4 HOH B 5 620 620 HOH HOH . 
H 4 HOH B 6 621 621 HOH HOH . 
H 4 HOH B 7 622 622 HOH HOH . 
H 4 HOH B 8 623 623 HOH HOH . 
H 4 HOH B 9 624 624 HOH HOH . 
H 4 HOH B 10 625 625 HOH HOH . 
H 4 HOH B 11 626 626 HOH HOH . 
H 4 HOH B 12 627 627 HOH HOH . 
H 4 HOH B 13 628 628 HOH HOH . 
H 4 HOH B 14 629 629 HOH HOH . 
H 4 HOH B 15 630 630 HOH HOH . 
H 4 HOH B 16 631 631 HOH HOH . 
H 4 HOH B 17 632 632 HOH HOH . 
H 4 HOH B 18 633 633 HOH HOH . 
H 4 HOH B 19 634 634 HOH HOH . 
H 4 HOH B 20 635 635 HOH HOH . 
H 4 HOH B 21 636 636 HOH HOH . 
H 4 HOH B 22 637 637 HOH HOH . 
H 4 HOH B 23 638 638 HOH HOH . 
H 4 HOH B 24 639 639 HOH HOH . 
H 4 HOH B 25 640 640 HOH HOH . 
H 4 HOH B 26 641 641 HOH HOH . 
H 4 HOH B 27 642 642 HOH HOH . 
H 4 HOH B 28 643 643 HOH HOH . 
H 4 HOH B 29 644 644 HOH HOH . 
H 4 HOH B 30 645 645 HOH HOH . 
H 4 HOH B 31 646 646 HOH HOH . 
H 4 HOH B 32 647 647 HOH HOH . 
H 4 HOH B 33 648 648 HOH HOH . 
H 4 HOH B 34 649 649 HOH HOH . 
H 4 HOH B 35 650 650 HOH HOH . 
H 4 HOH B 36 651 651 HOH HOH . 
H 4 HOH B 37 652 652 HOH HOH . 
H 4 HOH B 38 653 653 HOH HOH . 
H 4 HOH B 39 654 654 HOH HOH . 
H 4 HOH B 40 655 655 HOH HOH . 
H 4 HOH B 41 656 656 HOH HOH . 
H 4 HOH B 42 657 657 HOH HOH . 
H 4 HOH B 43 658 658 HOH HOH . 
H 4 HOH B 44 659 659 HOH HOH . 
H 4 HOH B 45 660 660 HOH HOH . 
H 4 HOH B 46 661 661 HOH HOH . 
H 4 HOH B 47 662 662 HOH HOH . 
H 4 HOH B 48 663 663 HOH HOH . 
H 4 HOH B 49 664 664 HOH HOH . 
H 4 HOH B 50 665 665 HOH HOH . 
H 4 HOH B 51 666 666 HOH HOH . 
H 4 HOH B 52 667 667 HOH HOH . 
H 4 HOH B 53 668 668 HOH HOH . 
H 4 HOH B 54 669 669 HOH HOH . 
H 4 HOH B 55 670 670 HOH HOH . 
H 4 HOH B 56 671 671 HOH HOH . 
H 4 HOH B 57 672 672 HOH HOH . 
H 4 HOH B 58 673 673 HOH HOH . 
H 4 HOH B 59 674 674 HOH HOH . 
H 4 HOH B 60 675 675 HOH HOH . 
H 4 HOH B 61 676 676 HOH HOH . 
H 4 HOH B 62 677 677 HOH HOH . 
H 4 HOH B 63 678 678 HOH HOH . 
H 4 HOH B 64 679 679 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 3.44 -0.046 10.841 1 28.93 ? N SAH 401 A 1 
HETATM 2 C CA SAH . . . C 2 4.702 -0.147 11.573 1 29.29 ? CA SAH 401 A 1 
HETATM 3 C CB SAH . . . C 2 4.566 0.016 13.096 1 28.9 ? CB SAH 401 A 1 
HETATM 4 C CG SAH . . . C 2 3.181 -0.282 13.661 1 28.22 ? CG SAH 401 A 1 
HETATM 5 S SD SAH . . . C 2 3.02 -0.066 15.456 1 25.2 ? SD SAH 401 A 1 
HETATM 6 C C SAH . . . C 2 5.389 -1.471 11.292 1 29.61 ? C SAH 401 A 1 
HETATM 7 O O SAH . . . C 2 4.855 -2.338 10.589 1 30.54 ? O SAH 401 A 1 
HETATM 8 O OXT SAH . . . C 2 6.501 -1.718 11.764 1 29.44 ? OXT SAH 401 A 1 
HETATM 9 C C5' SAH . . . C 2 1.368 0.646 15.392 1 24.34 ? C5' SAH 401 A 1 
HETATM 10 C C4' SAH . . . C 2 1.425 2.088 14.89 1 25.37 ? C4' SAH 401 A 1 
HETATM 11 O O4' SAH . . . C 2 0.14 2.472 14.425 1 25.84 ? O4' SAH 401 A 1 
HETATM 12 C C3' SAH . . . C 2 1.91 3.06 15.976 1 24.18 ? C3' SAH 401 A 1 
HETATM 13 O O3' SAH . . . C 2 2.987 3.798 15.45 1 24.1 ? O3' SAH 401 A 1 
HETATM 14 C C2' SAH . . . C 2 0.669 3.88 16.258 1 23.7 ? C2' SAH 401 A 1 
HETATM 15 O O2' SAH . . . C 2 0.941 5.224 16.51 1 23.26 ? O2' SAH 401 A 1 
HETATM 16 C C1' SAH . . . C 2 -0.127 3.743 14.957 1 25.63 ? C1' SAH 401 A 1 
HETATM 17 N N9 SAH . . . C 2 -1.545 3.97 15.214 1 26.38 ? N9 SAH 401 A 1 
HETATM 18 C C8 SAH . . . C 2 -2.344 3.388 16.162 1 26.31 ? C8 SAH 401 A 1 
HETATM 19 N N7 SAH . . . C 2 -3.579 3.939 16.069 1 27.17 ? N7 SAH 401 A 1 
HETATM 20 C C5 SAH . . . C 2 -3.566 4.862 15.079 1 26.56 ? C5 SAH 401 A 1 
HETATM 21 C C6 SAH . . . C 2 -4.534 5.694 14.584 1 26.09 ? C6 SAH 401 A 1 
HETATM 22 N N6 SAH . . . C 2 -5.775 5.704 15.09 1 25.24 ? N6 SAH 401 A 1 
HETATM 23 N N1 SAH . . . C 2 -4.178 6.529 13.558 1 26.21 ? N1 SAH 401 A 1 
HETATM 24 C C2 SAH . . . C 2 -2.91 6.561 13.04 1 26.01 ? C2 SAH 401 A 1 
HETATM 25 N N3 SAH . . . C 2 -1.952 5.725 13.532 1 24.29 ? N3 SAH 401 A 1 
HETATM 26 C C4 SAH . . . C 2 -2.289 4.897 14.535 1 26.23 ? C4 SAH 401 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#