data_3B5P # _model_server_result.job_id JnJYC_YYtBwhq_HdSYG1wA _model_server_result.datetime_utc '2024-11-13 11:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":244}' # _entry.id 3B5P # _exptl.entry_id 3B5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.29 _cell.angle_gamma 90 _cell.entry_id 3B5P _cell.length_a 38.67 _cell.length_b 78.51 _cell.length_c 45.58 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N GLU 3 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C GLN 31 A GLN 30 1_555 A N MSE 32 A MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 32 A MSE 31 1_555 A N LEU 33 A LEU 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C VAL 44 A VAL 43 1_555 A N MSE 45 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 A C MSE 45 A MSE 44 1_555 A N GLN 46 A GLN 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale7 A C GLU 85 A GLU 84 1_555 A N MSE 86 A MSE 85 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C GLU 85 A GLU 84 1_555 A N MSE 86 A MSE 85 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 86 A MSE 85 1_555 A N GLY 87 A GLY 86 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C MSE 86 A MSE 85 1_555 A N GLY 87 A GLY 86 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 A C THR 114 A THR 113 1_555 A N MSE 115 A MSE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 115 A MSE 114 1_555 A N PRO 116 A PRO 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale13 A C ALA 213 A ALA 212 1_555 A N MSE 214 A MSE 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale14 A C MSE 214 A MSE 213 1_555 A N ILE 215 A ILE 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale15 A C ALA 217 A ALA 216 1_555 A N MSE 218 A MSE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale16 A C MSE 218 A MSE 217 1_555 A N GLN 219 A GLN 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3B5P _atom_sites.fract_transf_matrix[1][1] 0.02586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010601 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 244 1 EDO EDO . C 2 EDO A 1 245 2 EDO EDO . D 2 EDO A 1 246 3 EDO EDO . E 3 HOH A 1 247 4 HOH HOH . E 3 HOH A 2 248 5 HOH HOH . E 3 HOH A 3 249 6 HOH HOH . E 3 HOH A 4 250 7 HOH HOH . E 3 HOH A 5 251 8 HOH HOH . E 3 HOH A 6 252 9 HOH HOH . E 3 HOH A 7 253 10 HOH HOH . E 3 HOH A 8 254 11 HOH HOH . E 3 HOH A 9 255 12 HOH HOH . E 3 HOH A 10 256 13 HOH HOH . E 3 HOH A 11 257 14 HOH HOH . E 3 HOH A 12 258 15 HOH HOH . E 3 HOH A 13 259 16 HOH HOH . E 3 HOH A 14 260 17 HOH HOH . E 3 HOH A 15 261 18 HOH HOH . E 3 HOH A 16 262 19 HOH HOH . E 3 HOH A 17 263 20 HOH HOH . E 3 HOH A 18 264 21 HOH HOH . E 3 HOH A 19 265 22 HOH HOH . E 3 HOH A 20 266 23 HOH HOH . E 3 HOH A 21 267 24 HOH HOH . E 3 HOH A 22 268 25 HOH HOH . E 3 HOH A 23 269 26 HOH HOH . E 3 HOH A 24 270 27 HOH HOH . E 3 HOH A 25 271 28 HOH HOH . E 3 HOH A 26 272 29 HOH HOH . E 3 HOH A 27 273 30 HOH HOH . E 3 HOH A 28 274 31 HOH HOH . E 3 HOH A 29 275 32 HOH HOH . E 3 HOH A 30 276 33 HOH HOH . E 3 HOH A 31 277 34 HOH HOH . E 3 HOH A 32 278 35 HOH HOH . E 3 HOH A 33 279 36 HOH HOH . E 3 HOH A 34 280 37 HOH HOH . E 3 HOH A 35 281 38 HOH HOH . E 3 HOH A 36 282 39 HOH HOH . E 3 HOH A 37 283 40 HOH HOH . E 3 HOH A 38 284 41 HOH HOH . E 3 HOH A 39 285 42 HOH HOH . E 3 HOH A 40 286 43 HOH HOH . E 3 HOH A 41 287 44 HOH HOH . E 3 HOH A 42 288 45 HOH HOH . E 3 HOH A 43 289 46 HOH HOH . E 3 HOH A 44 290 47 HOH HOH . E 3 HOH A 45 291 48 HOH HOH . E 3 HOH A 46 292 49 HOH HOH . E 3 HOH A 47 293 50 HOH HOH . E 3 HOH A 48 294 51 HOH HOH . E 3 HOH A 49 295 52 HOH HOH . E 3 HOH A 50 296 53 HOH HOH . E 3 HOH A 51 297 54 HOH HOH . E 3 HOH A 52 298 55 HOH HOH . E 3 HOH A 53 299 56 HOH HOH . E 3 HOH A 54 300 57 HOH HOH . E 3 HOH A 55 301 58 HOH HOH . E 3 HOH A 56 302 59 HOH HOH . E 3 HOH A 57 303 60 HOH HOH . E 3 HOH A 58 304 61 HOH HOH . E 3 HOH A 59 305 62 HOH HOH . E 3 HOH A 60 306 63 HOH HOH . E 3 HOH A 61 307 64 HOH HOH . E 3 HOH A 62 308 65 HOH HOH . E 3 HOH A 63 309 66 HOH HOH . E 3 HOH A 64 310 67 HOH HOH . E 3 HOH A 65 311 68 HOH HOH . E 3 HOH A 66 312 69 HOH HOH . E 3 HOH A 67 313 70 HOH HOH . E 3 HOH A 68 314 71 HOH HOH . E 3 HOH A 69 315 72 HOH HOH . E 3 HOH A 70 316 73 HOH HOH . E 3 HOH A 71 317 74 HOH HOH . E 3 HOH A 72 318 75 HOH HOH . E 3 HOH A 73 319 76 HOH HOH . E 3 HOH A 74 320 77 HOH HOH . E 3 HOH A 75 321 78 HOH HOH . E 3 HOH A 76 322 79 HOH HOH . E 3 HOH A 77 323 80 HOH HOH . E 3 HOH A 78 324 81 HOH HOH . E 3 HOH A 79 325 82 HOH HOH . E 3 HOH A 80 326 83 HOH HOH . E 3 HOH A 81 327 84 HOH HOH . E 3 HOH A 82 328 85 HOH HOH . E 3 HOH A 83 329 86 HOH HOH . E 3 HOH A 84 330 87 HOH HOH . E 3 HOH A 85 331 88 HOH HOH . E 3 HOH A 86 332 89 HOH HOH . E 3 HOH A 87 333 90 HOH HOH . E 3 HOH A 88 334 91 HOH HOH . E 3 HOH A 89 335 92 HOH HOH . E 3 HOH A 90 336 93 HOH HOH . E 3 HOH A 91 337 94 HOH HOH . E 3 HOH A 92 338 95 HOH HOH . E 3 HOH A 93 339 96 HOH HOH . E 3 HOH A 94 340 97 HOH HOH . E 3 HOH A 95 341 98 HOH HOH . E 3 HOH A 96 342 99 HOH HOH . E 3 HOH A 97 343 100 HOH HOH . E 3 HOH A 98 344 101 HOH HOH . E 3 HOH A 99 345 102 HOH HOH . E 3 HOH A 100 346 103 HOH HOH . E 3 HOH A 101 347 104 HOH HOH . E 3 HOH A 102 348 105 HOH HOH . E 3 HOH A 103 349 106 HOH HOH . E 3 HOH A 104 350 107 HOH HOH . E 3 HOH A 105 351 108 HOH HOH . E 3 HOH A 106 352 109 HOH HOH . E 3 HOH A 107 353 110 HOH HOH . E 3 HOH A 108 354 111 HOH HOH . E 3 HOH A 109 355 112 HOH HOH . E 3 HOH A 110 356 113 HOH HOH . E 3 HOH A 111 357 114 HOH HOH . E 3 HOH A 112 358 115 HOH HOH . E 3 HOH A 113 359 116 HOH HOH . E 3 HOH A 114 360 117 HOH HOH . E 3 HOH A 115 361 118 HOH HOH . E 3 HOH A 116 362 119 HOH HOH . E 3 HOH A 117 363 120 HOH HOH . E 3 HOH A 118 364 121 HOH HOH . E 3 HOH A 119 365 122 HOH HOH . E 3 HOH A 120 366 123 HOH HOH . E 3 HOH A 121 367 124 HOH HOH . E 3 HOH A 122 368 125 HOH HOH . E 3 HOH A 123 369 126 HOH HOH . E 3 HOH A 124 370 127 HOH HOH . E 3 HOH A 125 371 128 HOH HOH . E 3 HOH A 126 372 129 HOH HOH . E 3 HOH A 127 373 130 HOH HOH . E 3 HOH A 128 374 131 HOH HOH . E 3 HOH A 129 375 132 HOH HOH . E 3 HOH A 130 376 133 HOH HOH . E 3 HOH A 131 377 134 HOH HOH . E 3 HOH A 132 378 135 HOH HOH . E 3 HOH A 133 379 136 HOH HOH . E 3 HOH A 134 380 137 HOH HOH . E 3 HOH A 135 381 138 HOH HOH . E 3 HOH A 136 382 139 HOH HOH . E 3 HOH A 137 383 140 HOH HOH . E 3 HOH A 138 384 141 HOH HOH . E 3 HOH A 139 385 142 HOH HOH . E 3 HOH A 140 386 143 HOH HOH . E 3 HOH A 141 387 144 HOH HOH . E 3 HOH A 142 388 145 HOH HOH . E 3 HOH A 143 389 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -6.478 17.094 35.059 1 49.24 ? C1 EDO 244 A 1 HETATM 2 O O1 EDO . . . B 2 -6.243 18.202 35.944 1 50.51 ? O1 EDO 244 A 1 HETATM 3 C C2 EDO . . . B 2 -7.86 16.514 35.326 1 48.85 ? C2 EDO 244 A 1 HETATM 4 O O2 EDO . . . B 2 -8.908 17.368 34.814 1 45.7 ? O2 EDO 244 A 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #