data_3B66 # _model_server_result.job_id BTHFeFNJc5mCCfpKYkbrUw _model_server_result.datetime_utc '2025-04-19 12:37:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b66 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3B66 # _exptl.entry_id 3B66 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 411.332 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(1R,2S)-1,2-dihydroxy-2-methyl-3-(4-nitrophenoxy)propyl]amino}-2-(trifluoromethyl)benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B66 _cell.length_a 54.739 _cell.length_b 66.597 _cell.length_c 69.098 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B66 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H16 F3 N3 O5' _chem_comp.formula_weight 411.332 _chem_comp.id B66 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(1R,2S)-1,2-dihydroxy-2-methyl-3-(4-nitrophenoxy)propyl]amino}-2-(trifluoromethyl)benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 B66 doub 70 n y C17 C16 B66 sing 71 n y C17 H17 B66 sing 72 n n C18 C21 B66 sing 73 n y C18 H18 B66 sing 74 n n C21 N19 B66 sing 75 n n C21 C20 B66 doub 76 n y N19 O20 B66 sing 77 n n N19 O19 B66 doub 78 n n C20 C19 B66 sing 79 n y C20 H20 B66 sing 80 n n C19 C16 B66 doub 81 n y C19 H19 B66 sing 82 n n C16 O14 B66 sing 83 n n O14 C13 B66 sing 84 n n C13 C11 B66 sing 85 n n C13 H13 B66 sing 86 n n C13 H13A B66 sing 87 n n C11 O11 B66 sing 88 n n C11 C12 B66 sing 89 n n C11 C10 B66 sing 90 n n O11 HO11 B66 sing 91 n n C12 H12 B66 sing 92 n n C12 H12A B66 sing 93 n n C12 H12B B66 sing 94 n n C10 O10 B66 sing 95 n n C10 N9 B66 sing 96 n n N9 C6 B66 sing 97 n n N9 HN9 B66 sing 98 n n C6 C5 B66 doub 99 n y C6 C1 B66 sing 100 n y C5 C4 B66 sing 101 n y C5 H5 B66 sing 102 n n C1 C2 B66 doub 103 n y C1 H1 B66 sing 104 n n C2 C3 B66 sing 105 n y C2 H2 B66 sing 106 n n C3 C8 B66 sing 107 n n C3 C4 B66 doub 108 n y C8 N8 B66 trip 109 n n C4 C7 B66 sing 110 n n C7 F2 B66 sing 111 n n C7 F3 B66 sing 112 n n C7 F1 B66 sing 113 n n C10 H15 B66 sing 114 n n O10 H16 B66 sing 115 n n # _atom_sites.entry_id 3B66 _atom_sites.fract_transf_matrix[1][1] 0.018269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B66 A 1 1 1 B66 DRG . C 3 HOH A 1 101 101 HOH WAT . C 3 HOH A 2 102 102 HOH WAT . C 3 HOH A 3 103 103 HOH WAT . C 3 HOH A 4 104 104 HOH WAT . C 3 HOH A 5 105 105 HOH WAT . C 3 HOH A 6 106 106 HOH WAT . C 3 HOH A 7 107 107 HOH WAT . C 3 HOH A 8 108 108 HOH WAT . C 3 HOH A 9 109 109 HOH WAT . C 3 HOH A 10 110 110 HOH WAT . C 3 HOH A 11 111 111 HOH WAT . C 3 HOH A 12 112 112 HOH WAT . C 3 HOH A 13 113 113 HOH WAT . C 3 HOH A 14 114 114 HOH WAT . C 3 HOH A 15 115 115 HOH WAT . C 3 HOH A 16 116 116 HOH WAT . C 3 HOH A 17 117 117 HOH WAT . C 3 HOH A 18 118 118 HOH WAT . C 3 HOH A 19 119 119 HOH WAT . C 3 HOH A 20 120 120 HOH WAT . C 3 HOH A 21 121 121 HOH WAT . C 3 HOH A 22 122 122 HOH WAT . C 3 HOH A 23 123 123 HOH WAT . C 3 HOH A 24 124 124 HOH WAT . C 3 HOH A 25 125 125 HOH WAT . C 3 HOH A 26 126 126 HOH WAT . C 3 HOH A 27 127 127 HOH WAT . C 3 HOH A 28 128 128 HOH WAT . C 3 HOH A 29 129 129 HOH WAT . C 3 HOH A 30 130 130 HOH WAT . C 3 HOH A 31 131 131 HOH WAT . C 3 HOH A 32 132 132 HOH WAT . C 3 HOH A 33 133 133 HOH WAT . C 3 HOH A 34 134 134 HOH WAT . C 3 HOH A 35 135 135 HOH WAT . C 3 HOH A 36 136 136 HOH WAT . C 3 HOH A 37 137 137 HOH WAT . C 3 HOH A 38 138 138 HOH WAT . C 3 HOH A 39 139 139 HOH WAT . C 3 HOH A 40 140 140 HOH WAT . C 3 HOH A 41 141 141 HOH WAT . C 3 HOH A 42 142 142 HOH WAT . C 3 HOH A 43 143 143 HOH WAT . C 3 HOH A 44 144 144 HOH WAT . C 3 HOH A 45 145 145 HOH WAT . C 3 HOH A 46 146 146 HOH WAT . C 3 HOH A 47 147 147 HOH WAT . C 3 HOH A 48 148 148 HOH WAT . C 3 HOH A 49 149 149 HOH WAT . C 3 HOH A 50 150 150 HOH WAT . C 3 HOH A 51 151 151 HOH WAT . C 3 HOH A 52 152 152 HOH WAT . C 3 HOH A 53 153 153 HOH WAT . C 3 HOH A 54 154 154 HOH WAT . C 3 HOH A 55 155 155 HOH WAT . C 3 HOH A 56 156 156 HOH WAT . C 3 HOH A 57 157 157 HOH WAT . C 3 HOH A 58 158 158 HOH WAT . C 3 HOH A 59 159 159 HOH WAT . C 3 HOH A 60 160 160 HOH WAT . C 3 HOH A 61 161 161 HOH WAT . C 3 HOH A 62 162 162 HOH WAT . C 3 HOH A 63 163 163 HOH WAT . C 3 HOH A 64 164 164 HOH WAT . C 3 HOH A 65 165 165 HOH WAT . C 3 HOH A 66 166 166 HOH WAT . C 3 HOH A 67 167 167 HOH WAT . C 3 HOH A 68 168 168 HOH WAT . C 3 HOH A 69 169 169 HOH WAT . C 3 HOH A 70 170 170 HOH WAT . C 3 HOH A 71 171 171 HOH WAT . C 3 HOH A 72 172 172 HOH WAT . C 3 HOH A 73 173 173 HOH WAT . C 3 HOH A 74 174 174 HOH WAT . C 3 HOH A 75 175 175 HOH WAT . C 3 HOH A 76 176 176 HOH WAT . C 3 HOH A 77 177 177 HOH WAT . C 3 HOH A 78 178 178 HOH WAT . C 3 HOH A 79 179 179 HOH WAT . C 3 HOH A 80 180 180 HOH WAT . C 3 HOH A 81 181 181 HOH WAT . C 3 HOH A 82 182 182 HOH WAT . C 3 HOH A 83 183 183 HOH WAT . C 3 HOH A 84 184 184 HOH WAT . C 3 HOH A 85 185 185 HOH WAT . C 3 HOH A 86 186 186 HOH WAT . C 3 HOH A 87 187 187 HOH WAT . C 3 HOH A 88 188 188 HOH WAT . C 3 HOH A 89 189 189 HOH WAT . C 3 HOH A 90 190 190 HOH WAT . C 3 HOH A 91 191 191 HOH WAT . C 3 HOH A 92 192 192 HOH WAT . C 3 HOH A 93 193 193 HOH WAT . C 3 HOH A 94 194 194 HOH WAT . C 3 HOH A 95 195 195 HOH WAT . C 3 HOH A 96 196 196 HOH WAT . C 3 HOH A 97 197 197 HOH WAT . C 3 HOH A 98 198 198 HOH WAT . C 3 HOH A 99 199 199 HOH WAT . C 3 HOH A 100 200 200 HOH WAT . C 3 HOH A 101 201 201 HOH WAT . C 3 HOH A 102 202 202 HOH WAT . C 3 HOH A 103 203 203 HOH WAT . C 3 HOH A 104 204 204 HOH WAT . C 3 HOH A 105 205 205 HOH WAT . C 3 HOH A 106 206 206 HOH WAT . C 3 HOH A 107 207 207 HOH WAT . C 3 HOH A 108 208 208 HOH WAT . C 3 HOH A 109 209 209 HOH WAT . C 3 HOH A 110 210 210 HOH WAT . C 3 HOH A 111 211 211 HOH WAT . C 3 HOH A 112 212 212 HOH WAT . C 3 HOH A 113 213 213 HOH WAT . C 3 HOH A 114 214 214 HOH WAT . C 3 HOH A 115 215 215 HOH WAT . C 3 HOH A 116 216 216 HOH WAT . C 3 HOH A 117 217 217 HOH WAT . C 3 HOH A 118 218 218 HOH WAT . C 3 HOH A 119 219 219 HOH WAT . C 3 HOH A 120 220 220 HOH WAT . C 3 HOH A 121 221 221 HOH WAT . C 3 HOH A 122 222 222 HOH WAT . C 3 HOH A 123 223 223 HOH WAT . C 3 HOH A 124 224 224 HOH WAT . C 3 HOH A 125 225 225 HOH WAT . C 3 HOH A 126 226 226 HOH WAT . C 3 HOH A 127 227 227 HOH WAT . C 3 HOH A 128 228 228 HOH WAT . C 3 HOH A 129 229 229 HOH WAT . C 3 HOH A 130 230 230 HOH WAT . C 3 HOH A 131 231 231 HOH WAT . C 3 HOH A 132 232 232 HOH WAT . C 3 HOH A 133 233 233 HOH WAT . C 3 HOH A 134 234 234 HOH WAT . C 3 HOH A 135 235 235 HOH WAT . C 3 HOH A 136 236 236 HOH WAT . C 3 HOH A 137 237 237 HOH WAT . C 3 HOH A 138 238 238 HOH WAT . C 3 HOH A 139 239 239 HOH WAT . C 3 HOH A 140 240 240 HOH WAT . C 3 HOH A 141 241 241 HOH WAT . C 3 HOH A 142 242 242 HOH WAT . C 3 HOH A 143 243 243 HOH WAT . C 3 HOH A 144 244 244 HOH WAT . C 3 HOH A 145 245 245 HOH WAT . C 3 HOH A 146 246 246 HOH WAT . C 3 HOH A 147 247 247 HOH WAT . C 3 HOH A 148 248 248 HOH WAT . C 3 HOH A 149 249 249 HOH WAT . C 3 HOH A 150 250 250 HOH WAT . C 3 HOH A 151 251 251 HOH WAT . C 3 HOH A 152 252 252 HOH WAT . C 3 HOH A 153 253 253 HOH WAT . C 3 HOH A 154 254 254 HOH WAT . C 3 HOH A 155 255 255 HOH WAT . C 3 HOH A 156 256 256 HOH WAT . C 3 HOH A 157 257 257 HOH WAT . C 3 HOH A 158 258 258 HOH WAT . C 3 HOH A 159 259 259 HOH WAT . C 3 HOH A 160 260 260 HOH WAT . C 3 HOH A 161 261 261 HOH WAT . C 3 HOH A 162 262 262 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 B66 . . . B 2 28.997 2.025 8.078 1 13.24 ? C17 B66 1 A 1 HETATM 2 C C18 B66 . . . B 2 28.769 1.874 9.442 1 15.46 ? C18 B66 1 A 1 HETATM 3 C C21 B66 . . . B 2 29.431 0.879 10.156 1 18.33 ? C21 B66 1 A 1 HETATM 4 N N19 B66 . . . B 2 29.191 0.714 11.454 1 18.58 ? N19 B66 1 A 1 HETATM 5 O O20 B66 . . . B 2 29.906 -0.264 12.196 1 24.05 ? O20 B66 1 A 1 HETATM 6 O O19 B66 . . . B 2 28.245 1.541 12.12 1 22.74 ? O19 B66 1 A 1 HETATM 7 C C20 B66 . . . B 2 30.322 0.036 9.496 1 16.93 ? C20 B66 1 A 1 HETATM 8 C C19 B66 . . . B 2 30.548 0.187 8.131 1 17.54 ? C19 B66 1 A 1 HETATM 9 C C16 B66 . . . B 2 29.886 1.182 7.416 1 13.99 ? C16 B66 1 A 1 HETATM 10 O O14 B66 . . . B 2 30.126 1.392 6.093 1 14.5 ? O14 B66 1 A 1 HETATM 11 C C13 B66 . . . B 2 30.139 0.19 5.306 1 15.9 ? C13 B66 1 A 1 HETATM 12 C C11 B66 . . . B 2 29.761 0.566 3.883 1 15.07 ? C11 B66 1 A 1 HETATM 13 O O11 B66 . . . B 2 30.779 1.406 3.333 1 19.11 ? O11 B66 1 A 1 HETATM 14 C C12 B66 . . . B 2 29.601 -0.701 3.04 1 17.04 ? C12 B66 1 A 1 HETATM 15 C C10 B66 . . . B 2 28.445 1.345 3.924 1 15.84 ? C10 B66 1 A 1 HETATM 16 O O10 B66 . . . B 2 27.38 0.785 4.181 1 15.08 ? O10 B66 1 A 1 HETATM 17 N N9 B66 . . . B 2 28.594 2.65 3.708 1 13.81 ? N9 B66 1 A 1 HETATM 18 C C6 B66 . . . B 2 27.625 3.565 3.692 1 12.7 ? C6 B66 1 A 1 HETATM 19 C C5 B66 . . . B 2 26.282 3.266 3.912 1 12.66 ? C5 B66 1 A 1 HETATM 20 C C1 B66 . . . B 2 27.994 4.883 3.45 1 11.54 ? C1 B66 1 A 1 HETATM 21 C C2 B66 . . . B 2 27.023 5.877 3.431 1 11.65 ? C2 B66 1 A 1 HETATM 22 C C3 B66 . . . B 2 25.685 5.565 3.654 1 11.98 ? C3 B66 1 A 1 HETATM 23 C C8 B66 . . . B 2 24.765 6.662 3.625 1 12.01 ? C8 B66 1 A 1 HETATM 24 N N8 B66 . . . B 2 24.039 7.538 3.594 1 14.79 ? N8 B66 1 A 1 HETATM 25 C C4 B66 . . . B 2 25.289 4.247 3.899 1 13.84 ? C4 B66 1 A 1 HETATM 26 C C7 B66 . . . B 2 23.83 3.849 4.195 1 16.95 ? C7 B66 1 A 1 HETATM 27 F F2 B66 . . . B 2 23.559 4.057 5.48 1 17.21 ? F2 B66 1 A 1 HETATM 28 F F3 B66 . . . B 2 22.944 4.527 3.471 1 20.26 ? F3 B66 1 A 1 HETATM 29 F F1 B66 . . . B 2 23.591 2.565 3.94 1 18.72 ? F1 B66 1 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 762 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #