data_3B67 # _model_server_result.job_id 2DZWPZxfrbuwFxmcj-7mhg _model_server_result.datetime_utc '2025-08-03 18:03:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3B67 # _exptl.entry_id 3B67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.259 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-hydroxy-2-methyl-N-[4-nitro-3-(trifluoromethyl)phenyl]-3-(pentafluorophenoxy)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B67 _cell.length_a 54.865 _cell.length_b 66.201 _cell.length_c 69.741 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H10 F8 N2 O5' _chem_comp.formula_weight 474.259 _chem_comp.id B67 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-hydroxy-2-methyl-N-[4-nitro-3-(trifluoromethyl)phenyl]-3-(pentafluorophenoxy)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C7 B67 sing 70 n n C7 F2 B67 sing 71 n n C7 F3 B67 sing 72 n n C7 C4 B67 sing 73 n n C4 C5 B67 doub 74 n y C4 C3 B67 sing 75 n y C5 C6 B67 sing 76 n y C5 H5 B67 sing 77 n n C3 N8 B67 sing 78 n n C3 C2 B67 doub 79 n y N8 O2 B67 doub 80 n n O1 N8 B67 sing 81 n n C2 C1 B67 sing 82 n y C2 H2 B67 sing 83 n n C1 C6 B67 doub 84 n y C1 H1 B67 sing 85 n n C6 N9 B67 sing 86 n n N9 C10 B67 sing 87 n n N9 HN9 B67 sing 88 n n C10 O10 B67 doub 89 n n C10 C11 B67 sing 90 n n C11 O11 B67 sing 91 n n C11 C12 B67 sing 92 n n C11 C13 B67 sing 93 n n O11 HO11 B67 sing 94 n n C12 H12 B67 sing 95 n n C12 H12A B67 sing 96 n n C12 H12B B67 sing 97 n n C13 O14 B67 sing 98 n n C13 H13 B67 sing 99 n n C13 H13A B67 sing 100 n n O14 C16 B67 sing 101 n n C16 C17 B67 doub 102 n y C16 C21 B67 sing 103 n y C17 F17 B67 sing 104 n n C17 C18 B67 sing 105 n y C18 F18 B67 sing 106 n n C18 C19 B67 doub 107 n y C19 F19 B67 sing 108 n n C19 C20 B67 sing 109 n y C20 F20 B67 sing 110 n n C20 C21 B67 doub 111 n y C21 F21 B67 sing 112 n n # _atom_sites.entry_id 3B67 _atom_sites.fract_transf_matrix[1][1] 0.018227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B67 A 1 1 1 B67 DRG . C 3 HOH A 1 101 101 HOH WAT . C 3 HOH A 2 102 102 HOH WAT . C 3 HOH A 3 103 103 HOH WAT . C 3 HOH A 4 104 104 HOH WAT . C 3 HOH A 5 105 105 HOH WAT . C 3 HOH A 6 106 106 HOH WAT . C 3 HOH A 7 107 107 HOH WAT . C 3 HOH A 8 108 108 HOH WAT . C 3 HOH A 9 109 109 HOH WAT . C 3 HOH A 10 110 110 HOH WAT . C 3 HOH A 11 111 111 HOH WAT . C 3 HOH A 12 112 112 HOH WAT . C 3 HOH A 13 113 113 HOH WAT . C 3 HOH A 14 114 114 HOH WAT . C 3 HOH A 15 115 115 HOH WAT . C 3 HOH A 16 116 116 HOH WAT . C 3 HOH A 17 117 117 HOH WAT . C 3 HOH A 18 118 118 HOH WAT . C 3 HOH A 19 119 119 HOH WAT . C 3 HOH A 20 120 120 HOH WAT . C 3 HOH A 21 121 121 HOH WAT . C 3 HOH A 22 122 122 HOH WAT . C 3 HOH A 23 123 123 HOH WAT . C 3 HOH A 24 124 124 HOH WAT . C 3 HOH A 25 125 125 HOH WAT . C 3 HOH A 26 126 126 HOH WAT . C 3 HOH A 27 127 127 HOH WAT . C 3 HOH A 28 128 128 HOH WAT . C 3 HOH A 29 129 129 HOH WAT . C 3 HOH A 30 130 130 HOH WAT . C 3 HOH A 31 131 131 HOH WAT . C 3 HOH A 32 132 132 HOH WAT . C 3 HOH A 33 133 133 HOH WAT . C 3 HOH A 34 134 134 HOH WAT . C 3 HOH A 35 135 135 HOH WAT . C 3 HOH A 36 137 137 HOH WAT . C 3 HOH A 37 138 138 HOH WAT . C 3 HOH A 38 139 139 HOH WAT . C 3 HOH A 39 140 140 HOH WAT . C 3 HOH A 40 141 141 HOH WAT . C 3 HOH A 41 142 142 HOH WAT . C 3 HOH A 42 143 143 HOH WAT . C 3 HOH A 43 144 144 HOH WAT . C 3 HOH A 44 145 145 HOH WAT . C 3 HOH A 45 146 146 HOH WAT . C 3 HOH A 46 147 147 HOH WAT . C 3 HOH A 47 148 148 HOH WAT . C 3 HOH A 48 149 149 HOH WAT . C 3 HOH A 49 150 150 HOH WAT . C 3 HOH A 50 151 151 HOH WAT . C 3 HOH A 51 152 152 HOH WAT . C 3 HOH A 52 153 153 HOH WAT . C 3 HOH A 53 154 154 HOH WAT . C 3 HOH A 54 155 155 HOH WAT . C 3 HOH A 55 156 156 HOH WAT . C 3 HOH A 56 157 157 HOH WAT . C 3 HOH A 57 158 158 HOH WAT . C 3 HOH A 58 159 159 HOH WAT . C 3 HOH A 59 161 161 HOH WAT . C 3 HOH A 60 162 162 HOH WAT . C 3 HOH A 61 163 163 HOH WAT . C 3 HOH A 62 164 164 HOH WAT . C 3 HOH A 63 165 165 HOH WAT . C 3 HOH A 64 166 166 HOH WAT . C 3 HOH A 65 167 167 HOH WAT . C 3 HOH A 66 168 168 HOH WAT . C 3 HOH A 67 169 169 HOH WAT . C 3 HOH A 68 170 170 HOH WAT . C 3 HOH A 69 171 171 HOH WAT . C 3 HOH A 70 172 172 HOH WAT . C 3 HOH A 71 173 173 HOH WAT . C 3 HOH A 72 174 174 HOH WAT . C 3 HOH A 73 175 175 HOH WAT . C 3 HOH A 74 176 176 HOH WAT . C 3 HOH A 75 177 177 HOH WAT . C 3 HOH A 76 178 178 HOH WAT . C 3 HOH A 77 179 179 HOH WAT . C 3 HOH A 78 180 180 HOH WAT . C 3 HOH A 79 181 181 HOH WAT . C 3 HOH A 80 182 182 HOH WAT . C 3 HOH A 81 183 183 HOH WAT . C 3 HOH A 82 184 184 HOH WAT . C 3 HOH A 83 185 185 HOH WAT . C 3 HOH A 84 186 186 HOH WAT . C 3 HOH A 85 187 187 HOH WAT . C 3 HOH A 86 188 188 HOH WAT . C 3 HOH A 87 189 189 HOH WAT . C 3 HOH A 88 190 190 HOH WAT . C 3 HOH A 89 191 191 HOH WAT . C 3 HOH A 90 192 192 HOH WAT . C 3 HOH A 91 193 193 HOH WAT . C 3 HOH A 92 194 194 HOH WAT . C 3 HOH A 93 195 195 HOH WAT . C 3 HOH A 94 196 196 HOH WAT . C 3 HOH A 95 197 197 HOH WAT . C 3 HOH A 96 198 198 HOH WAT . C 3 HOH A 97 200 200 HOH WAT . C 3 HOH A 98 201 201 HOH WAT . C 3 HOH A 99 202 202 HOH WAT . C 3 HOH A 100 203 203 HOH WAT . C 3 HOH A 101 204 204 HOH WAT . C 3 HOH A 102 205 205 HOH WAT . C 3 HOH A 103 206 206 HOH WAT . C 3 HOH A 104 207 207 HOH WAT . C 3 HOH A 105 208 208 HOH WAT . C 3 HOH A 106 209 209 HOH WAT . C 3 HOH A 107 210 210 HOH WAT . C 3 HOH A 108 211 211 HOH WAT . C 3 HOH A 109 212 212 HOH WAT . C 3 HOH A 110 213 213 HOH WAT . C 3 HOH A 111 214 214 HOH WAT . C 3 HOH A 112 215 215 HOH WAT . C 3 HOH A 113 216 216 HOH WAT . C 3 HOH A 114 217 217 HOH WAT . C 3 HOH A 115 218 218 HOH WAT . C 3 HOH A 116 219 219 HOH WAT . C 3 HOH A 117 220 220 HOH WAT . C 3 HOH A 118 221 221 HOH WAT . C 3 HOH A 119 222 222 HOH WAT . C 3 HOH A 120 223 223 HOH WAT . C 3 HOH A 121 224 224 HOH WAT . C 3 HOH A 122 225 225 HOH WAT . C 3 HOH A 123 226 226 HOH WAT . C 3 HOH A 124 227 227 HOH WAT . C 3 HOH A 125 228 228 HOH WAT . C 3 HOH A 126 229 229 HOH WAT . C 3 HOH A 127 230 230 HOH WAT . C 3 HOH A 128 231 231 HOH WAT . C 3 HOH A 129 232 232 HOH WAT . C 3 HOH A 130 233 233 HOH WAT . C 3 HOH A 131 234 234 HOH WAT . C 3 HOH A 132 235 235 HOH WAT . C 3 HOH A 133 236 236 HOH WAT . C 3 HOH A 134 237 237 HOH WAT . C 3 HOH A 135 238 238 HOH WAT . C 3 HOH A 136 239 239 HOH WAT . C 3 HOH A 137 240 240 HOH WAT . C 3 HOH A 138 241 241 HOH WAT . C 3 HOH A 139 242 242 HOH WAT . C 3 HOH A 140 243 243 HOH WAT . C 3 HOH A 141 244 244 HOH WAT . C 3 HOH A 142 245 245 HOH WAT . C 3 HOH A 143 246 246 HOH WAT . C 3 HOH A 144 247 247 HOH WAT . C 3 HOH A 145 248 248 HOH WAT . C 3 HOH A 146 249 249 HOH WAT . C 3 HOH A 147 250 250 HOH WAT . C 3 HOH A 148 251 251 HOH WAT . C 3 HOH A 149 252 252 HOH WAT . C 3 HOH A 150 253 253 HOH WAT . C 3 HOH A 151 254 254 HOH WAT . C 3 HOH A 152 255 255 HOH WAT . C 3 HOH A 153 256 256 HOH WAT . C 3 HOH A 154 257 257 HOH WAT . C 3 HOH A 155 258 258 HOH WAT . C 3 HOH A 156 259 259 HOH WAT . C 3 HOH A 157 260 260 HOH WAT . C 3 HOH A 158 261 261 HOH WAT . C 3 HOH A 159 262 262 HOH WAT . C 3 HOH A 160 263 263 HOH WAT . C 3 HOH A 161 264 264 HOH WAT . C 3 HOH A 162 265 265 HOH WAT . C 3 HOH A 163 266 266 HOH WAT . C 3 HOH A 164 267 267 HOH WAT . C 3 HOH A 165 268 268 HOH WAT . C 3 HOH A 166 269 269 HOH WAT . C 3 HOH A 167 270 270 HOH WAT . C 3 HOH A 168 271 271 HOH WAT . C 3 HOH A 169 272 272 HOH WAT . C 3 HOH A 170 273 273 HOH WAT . C 3 HOH A 171 274 274 HOH WAT . C 3 HOH A 172 275 275 HOH WAT . C 3 HOH A 173 276 276 HOH WAT . C 3 HOH A 174 277 277 HOH WAT . C 3 HOH A 175 278 278 HOH WAT . C 3 HOH A 176 279 279 HOH WAT . C 3 HOH A 177 280 280 HOH WAT . C 3 HOH A 178 281 281 HOH WAT . C 3 HOH A 179 282 282 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 B67 . . . B 2 23.747 2.423 4.434 1 17.18 ? F1 B67 1 A 1 HETATM 2 C C7 B67 . . . B 2 23.827 3.749 4.507 1 17.29 ? C7 B67 1 A 1 HETATM 3 F F2 B67 . . . B 2 23.512 4.086 5.754 1 17.99 ? F2 B67 1 A 1 HETATM 4 F F3 B67 . . . B 2 22.906 4.217 3.67 1 19.55 ? F3 B67 1 A 1 HETATM 5 C C4 B67 . . . B 2 25.242 4.246 4.156 1 17.45 ? C4 B67 1 A 1 HETATM 6 C C5 B67 . . . B 2 26.292 3.328 4.151 1 16.63 ? C5 B67 1 A 1 HETATM 7 C C3 B67 . . . B 2 25.528 5.556 3.764 1 16.61 ? C3 B67 1 A 1 HETATM 8 N N8 B67 . . . B 2 24.69 6.579 3.927 1 16.87 ? N8 B67 1 A 1 HETATM 9 O O2 B67 . . . B 2 25.045 7.839 3.377 1 18.76 ? O2 B67 1 A 1 HETATM 10 O O1 B67 . . . B 2 23.425 6.458 4.561 1 23.11 ? O1 B67 1 A 1 HETATM 11 C C2 B67 . . . B 2 26.816 5.89 3.357 1 15.61 ? C2 B67 1 A 1 HETATM 12 C C1 B67 . . . B 2 27.849 4.96 3.353 1 16.04 ? C1 B67 1 A 1 HETATM 13 C C6 B67 . . . B 2 27.589 3.657 3.765 1 18.26 ? C6 B67 1 A 1 HETATM 14 N N9 B67 . . . B 2 28.602 2.796 3.838 1 16.73 ? N9 B67 1 A 1 HETATM 15 C C10 B67 . . . B 2 28.501 1.54 4.271 1 16.52 ? C10 B67 1 A 1 HETATM 16 O O10 B67 . . . B 2 27.458 1.007 4.646 1 15.23 ? O10 B67 1 A 1 HETATM 17 C C11 B67 . . . B 2 29.821 0.765 4.288 1 18.31 ? C11 B67 1 A 1 HETATM 18 O O11 B67 . . . B 2 30.856 1.572 3.72 1 21.17 ? O11 B67 1 A 1 HETATM 19 C C12 B67 . . . B 2 29.673 -0.538 3.5 1 19.84 ? C12 B67 1 A 1 HETATM 20 C C13 B67 . . . B 2 30.156 0.436 5.735 1 16.33 ? C13 B67 1 A 1 HETATM 21 O O14 B67 . . . B 2 30.467 1.602 6.518 1 14.67 ? O14 B67 1 A 1 HETATM 22 C C16 B67 . . . B 2 29.784 1.628 7.698 1 15.2 ? C16 B67 1 A 1 HETATM 23 C C17 B67 . . . B 2 28.731 2.522 7.879 1 16.21 ? C17 B67 1 A 1 HETATM 24 F F17 B67 . . . B 2 28.4 3.331 6.85 1 14.76 ? F17 B67 1 A 1 HETATM 25 C C18 B67 . . . B 2 28.05 2.571 9.097 1 18.14 ? C18 B67 1 A 1 HETATM 26 F F18 B67 . . . B 2 27.069 3.484 9.282 1 19.65 ? F18 B67 1 A 1 HETATM 27 C C19 B67 . . . B 2 28.416 1.705 10.129 1 16.7 ? C19 B67 1 A 1 HETATM 28 F F19 B67 . . . B 2 27.72 1.703 11.288 1 20.64 ? F19 B67 1 A 1 HETATM 29 C C20 B67 . . . B 2 29.475 0.808 9.952 1 17.07 ? C20 B67 1 A 1 HETATM 30 F F20 B67 . . . B 2 29.801 -0.067 10.928 1 16.14 ? F20 B67 1 A 1 HETATM 31 C C21 B67 . . . B 2 30.163 0.785 8.738 1 16.15 ? C21 B67 1 A 1 HETATM 32 F F21 B67 . . . B 2 31.239 -0.008 8.539 1 16.76 ? F21 B67 1 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #