data_3B6C # _model_server_result.job_id 5vVjLhME7P7qL5FZt8HZNg _model_server_result.datetime_utc '2025-04-11 20:27:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 3B6C # _exptl.entry_id 3B6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.279 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3S)-9-hydroxy-1-methyl-10-oxo-4,10-dihydro-3H-benzo[g]isochromen-3-yl]acetic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B6C _cell.length_a 55.969 _cell.length_b 79.396 _cell.length_c 103.453 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C16 H14 O5' _chem_comp.formula_weight 286.279 _chem_comp.id SDN _chem_comp.mon_nstd_flag . _chem_comp.name '[(3S)-9-hydroxy-1-methyl-10-oxo-4,10-dihydro-3H-benzo[g]isochromen-3-yl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4,10-dihydro-9-hydroxy-1-methyl-10-oxo-3-H-naphtho-[2,3-c]-pyran-3-(S)-acetic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C10 SDN sing 277 n y C9 C8 SDN doub 278 n y C10 C11 SDN doub 279 n y C8 C7 SDN sing 280 n y C11 O4 SDN sing 281 n n C11 C12 SDN sing 282 n y C7 C12 SDN doub 283 n y C7 C6 SDN sing 284 n n C12 C13 SDN sing 285 n n C6 C5 SDN doub 286 n n C13 O5 SDN doub 287 n n C13 C14 SDN sing 288 n n C5 C14 SDN sing 289 n n C5 C4 SDN sing 290 n n C14 C15 SDN doub 291 n n C4 C3 SDN sing 292 n n C15 C16 SDN sing 293 n n C15 O3 SDN sing 294 n n C3 O3 SDN sing 295 n n C3 C2 SDN sing 296 n n C2 C1 SDN sing 297 n n C1 O2 SDN doub 298 n n C1 O1 SDN sing 299 n n O4 HO4 SDN sing 300 n n C16 H161 SDN sing 301 n n C16 H162 SDN sing 302 n n C16 H163 SDN sing 303 n n C10 H10 SDN sing 304 n n C9 H9 SDN sing 305 n n C8 H8 SDN sing 306 n n C6 H6 SDN sing 307 n n C4 H41 SDN sing 308 n n C4 H42 SDN sing 309 n n C3 H3 SDN sing 310 n n C2 H21 SDN sing 311 n n C2 H22 SDN sing 312 n n O1 HO1 SDN sing 313 n n # _atom_sites.entry_id 3B6C _atom_sites.fract_transf_matrix[1][1] 0.017867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SDN A 1 301 301 SDN SDN . D 2 SDN A 1 302 302 SDN SDN . E 2 SDN B 1 303 303 SDN SDN . F 3 HOH A 1 303 76 HOH HOH . F 3 HOH A 2 304 77 HOH HOH . F 3 HOH A 3 305 78 HOH HOH . F 3 HOH A 4 306 79 HOH HOH . F 3 HOH A 5 307 80 HOH HOH . F 3 HOH A 6 308 81 HOH HOH . F 3 HOH A 7 309 82 HOH HOH . F 3 HOH A 8 310 83 HOH HOH . F 3 HOH A 9 311 84 HOH HOH . F 3 HOH A 10 312 85 HOH HOH . F 3 HOH A 11 313 86 HOH HOH . F 3 HOH A 12 314 87 HOH HOH . F 3 HOH A 13 315 88 HOH HOH . F 3 HOH A 14 316 89 HOH HOH . F 3 HOH A 15 317 90 HOH HOH . F 3 HOH A 16 318 91 HOH HOH . F 3 HOH A 17 319 92 HOH HOH . F 3 HOH A 18 320 93 HOH HOH . F 3 HOH A 19 321 94 HOH HOH . F 3 HOH A 20 322 95 HOH HOH . F 3 HOH A 21 323 96 HOH HOH . F 3 HOH A 22 324 97 HOH HOH . F 3 HOH A 23 325 98 HOH HOH . F 3 HOH A 24 326 99 HOH HOH . F 3 HOH A 25 327 100 HOH HOH . F 3 HOH A 26 328 101 HOH HOH . F 3 HOH A 27 329 102 HOH HOH . F 3 HOH A 28 330 103 HOH HOH . F 3 HOH A 29 331 104 HOH HOH . F 3 HOH A 30 332 105 HOH HOH . F 3 HOH A 31 333 106 HOH HOH . F 3 HOH A 32 334 107 HOH HOH . F 3 HOH A 33 335 108 HOH HOH . F 3 HOH A 34 336 109 HOH HOH . F 3 HOH A 35 337 110 HOH HOH . F 3 HOH A 36 338 111 HOH HOH . F 3 HOH A 37 339 112 HOH HOH . F 3 HOH A 38 340 113 HOH HOH . F 3 HOH A 39 341 114 HOH HOH . F 3 HOH A 40 342 115 HOH HOH . F 3 HOH A 41 343 116 HOH HOH . F 3 HOH A 42 344 117 HOH HOH . F 3 HOH A 43 345 118 HOH HOH . F 3 HOH A 44 346 119 HOH HOH . F 3 HOH A 45 347 120 HOH HOH . F 3 HOH A 46 348 121 HOH HOH . F 3 HOH A 47 349 122 HOH HOH . F 3 HOH A 48 350 123 HOH HOH . F 3 HOH A 49 351 124 HOH HOH . F 3 HOH A 50 352 125 HOH HOH . F 3 HOH A 51 353 126 HOH HOH . F 3 HOH A 52 354 127 HOH HOH . F 3 HOH A 53 355 128 HOH HOH . F 3 HOH A 54 356 129 HOH HOH . F 3 HOH A 55 357 130 HOH HOH . F 3 HOH A 56 358 131 HOH HOH . F 3 HOH A 57 359 132 HOH HOH . F 3 HOH A 58 360 133 HOH HOH . F 3 HOH A 59 361 134 HOH HOH . F 3 HOH A 60 362 135 HOH HOH . F 3 HOH A 61 363 136 HOH HOH . F 3 HOH A 62 364 137 HOH HOH . F 3 HOH A 63 365 138 HOH HOH . F 3 HOH A 64 366 139 HOH HOH . F 3 HOH A 65 367 140 HOH HOH . F 3 HOH A 66 368 141 HOH HOH . F 3 HOH A 67 369 142 HOH HOH . F 3 HOH A 68 370 143 HOH HOH . F 3 HOH A 69 371 144 HOH HOH . F 3 HOH A 70 372 145 HOH HOH . F 3 HOH A 71 373 146 HOH HOH . G 3 HOH B 1 304 1 HOH HOH . G 3 HOH B 2 305 2 HOH HOH . G 3 HOH B 3 306 3 HOH HOH . G 3 HOH B 4 307 4 HOH HOH . G 3 HOH B 5 308 5 HOH HOH . G 3 HOH B 6 309 6 HOH HOH . G 3 HOH B 7 310 7 HOH HOH . G 3 HOH B 8 311 8 HOH HOH . G 3 HOH B 9 312 9 HOH HOH . G 3 HOH B 10 313 10 HOH HOH . G 3 HOH B 11 314 11 HOH HOH . G 3 HOH B 12 315 12 HOH HOH . G 3 HOH B 13 316 13 HOH HOH . G 3 HOH B 14 317 14 HOH HOH . G 3 HOH B 15 318 15 HOH HOH . G 3 HOH B 16 319 16 HOH HOH . G 3 HOH B 17 320 17 HOH HOH . G 3 HOH B 18 321 18 HOH HOH . G 3 HOH B 19 322 19 HOH HOH . G 3 HOH B 20 323 20 HOH HOH . G 3 HOH B 21 324 21 HOH HOH . G 3 HOH B 22 325 22 HOH HOH . G 3 HOH B 23 326 23 HOH HOH . G 3 HOH B 24 327 24 HOH HOH . G 3 HOH B 25 328 25 HOH HOH . G 3 HOH B 26 329 26 HOH HOH . G 3 HOH B 27 330 27 HOH HOH . G 3 HOH B 28 331 28 HOH HOH . G 3 HOH B 29 332 29 HOH HOH . G 3 HOH B 30 333 30 HOH HOH . G 3 HOH B 31 334 31 HOH HOH . G 3 HOH B 32 335 32 HOH HOH . G 3 HOH B 33 336 33 HOH HOH . G 3 HOH B 34 337 34 HOH HOH . G 3 HOH B 35 338 35 HOH HOH . G 3 HOH B 36 339 36 HOH HOH . G 3 HOH B 37 340 37 HOH HOH . G 3 HOH B 38 341 38 HOH HOH . G 3 HOH B 39 342 39 HOH HOH . G 3 HOH B 40 343 40 HOH HOH . G 3 HOH B 41 344 41 HOH HOH . G 3 HOH B 42 345 42 HOH HOH . G 3 HOH B 43 346 43 HOH HOH . G 3 HOH B 44 347 44 HOH HOH . G 3 HOH B 45 348 45 HOH HOH . G 3 HOH B 46 349 46 HOH HOH . G 3 HOH B 47 350 47 HOH HOH . G 3 HOH B 48 351 48 HOH HOH . G 3 HOH B 49 352 49 HOH HOH . G 3 HOH B 50 353 50 HOH HOH . G 3 HOH B 51 354 51 HOH HOH . G 3 HOH B 52 355 52 HOH HOH . G 3 HOH B 53 356 53 HOH HOH . G 3 HOH B 54 357 54 HOH HOH . G 3 HOH B 55 358 55 HOH HOH . G 3 HOH B 56 359 56 HOH HOH . G 3 HOH B 57 360 57 HOH HOH . G 3 HOH B 58 361 58 HOH HOH . G 3 HOH B 59 362 59 HOH HOH . G 3 HOH B 60 363 60 HOH HOH . G 3 HOH B 61 364 61 HOH HOH . G 3 HOH B 62 365 62 HOH HOH . G 3 HOH B 63 366 63 HOH HOH . G 3 HOH B 64 367 64 HOH HOH . G 3 HOH B 65 368 65 HOH HOH . G 3 HOH B 66 369 66 HOH HOH . G 3 HOH B 67 370 67 HOH HOH . G 3 HOH B 68 371 68 HOH HOH . G 3 HOH B 69 372 69 HOH HOH . G 3 HOH B 70 373 70 HOH HOH . G 3 HOH B 71 374 71 HOH HOH . G 3 HOH B 72 375 72 HOH HOH . G 3 HOH B 73 376 73 HOH HOH . G 3 HOH B 74 377 74 HOH HOH . G 3 HOH B 75 378 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 SDN . . . D 2 -28.073 -6.539 -5.147 1 131.37 ? O4 SDN 302 A 1 HETATM 2 C C11 SDN . . . D 2 -28.619 -7.602 -4.937 1 131.1 ? C11 SDN 302 A 1 HETATM 3 C C12 SDN . . . D 2 -28.377 -8.661 -5.803 1 130.88 ? C12 SDN 302 A 1 HETATM 4 C C13 SDN . . . D 2 -27.527 -8.515 -6.869 1 130.84 ? C13 SDN 302 A 1 HETATM 5 O O5 SDN . . . D 2 -26.984 -7.402 -7.031 1 130.57 ? O5 SDN 302 A 1 HETATM 6 C C14 SDN . . . D 2 -27.262 -9.577 -7.727 1 131.86 ? C14 SDN 302 A 1 HETATM 7 C C15 SDN . . . D 2 -26.316 -9.431 -8.824 1 132.73 ? C15 SDN 302 A 1 HETATM 8 O O3 SDN . . . D 2 -25.771 -10.655 -9.425 1 132.62 ? O3 SDN 302 A 1 HETATM 9 C C16 SDN . . . D 2 -25.772 -8.107 -9.219 1 133.57 ? C16 SDN 302 A 1 HETATM 10 C C10 SDN . . . D 2 -29.463 -7.751 -3.844 1 131.31 ? C10 SDN 302 A 1 HETATM 11 C C9 SDN . . . D 2 -30.079 -8.985 -3.606 1 131.07 ? C9 SDN 302 A 1 HETATM 12 C C8 SDN . . . D 2 -29.839 -10.061 -4.487 1 131.57 ? C8 SDN 302 A 1 HETATM 13 C C7 SDN . . . D 2 -28.996 -9.894 -5.577 1 131.48 ? C7 SDN 302 A 1 HETATM 14 C C6 SDN . . . D 2 -28.745 -10.942 -6.461 1 132.17 ? C6 SDN 302 A 1 HETATM 15 C C5 SDN . . . D 2 -27.88 -10.788 -7.543 1 132.1 ? C5 SDN 302 A 1 HETATM 16 C C4 SDN . . . D 2 -27.641 -11.956 -8.462 1 132.22 ? C4 SDN 302 A 1 HETATM 17 C C3 SDN . . . D 2 -26.675 -11.73 -9.617 1 132.15 ? C3 SDN 302 A 1 HETATM 18 C C2 SDN . . . D 2 -27.394 -11.534 -10.941 1 132.13 ? C2 SDN 302 A 1 HETATM 19 C C1 SDN . . . D 2 -26.612 -12.23 -12.034 1 132.36 ? C1 SDN 302 A 1 HETATM 20 O O2 SDN . . . D 2 -27.043 -13.288 -12.528 1 132.8 ? O2 SDN 302 A 1 HETATM 21 O O1 SDN . . . D 2 -25.556 -11.715 -12.417 1 132.24 ? O1 SDN 302 A 1 HETATM 22 H H3 SDN . . . D 2 -26.143 -12.68 -9.778 1 132.15 ? H3 SDN 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #