data_3B6M # _model_server_result.job_id nq5DtX2OvL7gtWW3RXAi1Q _model_server_result.datetime_utc '2024-11-23 21:07:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b6m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":200}' # _entry.id 3B6M # _exptl.entry_id 3B6M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B6M _cell.length_a 62.8 _cell.length_b 62.8 _cell.length_c 201.532 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B6M _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 332 n n N1 C10 FMN doub 333 n n C2 O2 FMN doub 334 n n C2 N3 FMN sing 335 n n N3 C4 FMN sing 336 n n N3 HN3 FMN sing 337 n n C4 O4 FMN doub 338 n n C4 C4A FMN sing 339 n n C4A N5 FMN doub 340 n n C4A C10 FMN sing 341 n n N5 C5A FMN sing 342 n n C5A C6 FMN doub 343 n y C5A C9A FMN sing 344 n y C6 C7 FMN sing 345 n y C6 H6 FMN sing 346 n n C7 C7M FMN sing 347 n n C7 C8 FMN doub 348 n y C7M HM71 FMN sing 349 n n C7M HM72 FMN sing 350 n n C7M HM73 FMN sing 351 n n C8 C8M FMN sing 352 n n C8 C9 FMN sing 353 n y C8M HM81 FMN sing 354 n n C8M HM82 FMN sing 355 n n C8M HM83 FMN sing 356 n n C9 C9A FMN doub 357 n y C9 H9 FMN sing 358 n n C9A N10 FMN sing 359 n n N10 C10 FMN sing 360 n n N10 C1' FMN sing 361 n n C1' C2' FMN sing 362 n n C1' "H1'1" FMN sing 363 n n C1' "H1'2" FMN sing 364 n n C2' O2' FMN sing 365 n n C2' C3' FMN sing 366 n n C2' H2' FMN sing 367 n n O2' HO2' FMN sing 368 n n C3' O3' FMN sing 369 n n C3' C4' FMN sing 370 n n C3' H3' FMN sing 371 n n O3' HO3' FMN sing 372 n n C4' O4' FMN sing 373 n n C4' C5' FMN sing 374 n n C4' H4' FMN sing 375 n n O4' HO4' FMN sing 376 n n C5' O5' FMN sing 377 n n C5' "H5'1" FMN sing 378 n n C5' "H5'2" FMN sing 379 n n O5' P FMN sing 380 n n P O1P FMN doub 381 n n P O2P FMN sing 382 n n P O3P FMN sing 383 n n O2P HOP2 FMN sing 384 n n O3P HOP3 FMN sing 385 n n # _atom_sites.entry_id 3B6M _atom_sites.fract_transf_matrix[1][1] 0.015924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 200 200 FMN FMN . D 3 144 A 1 201 1 144 144 . E 4 15P A 1 202 1 15P 15P . F 2 FMN B 1 200 200 FMN FMN . G 3 144 B 1 201 2 144 144 . H 5 HOH A 1 203 1 HOH HOH . H 5 HOH A 2 204 3 HOH HOH . H 5 HOH A 3 205 4 HOH HOH . H 5 HOH A 4 206 9 HOH HOH . H 5 HOH A 5 207 17 HOH HOH . H 5 HOH A 6 208 19 HOH HOH . H 5 HOH A 7 209 21 HOH HOH . H 5 HOH A 8 210 22 HOH HOH . H 5 HOH A 9 211 28 HOH HOH . H 5 HOH A 10 212 33 HOH HOH . H 5 HOH A 11 213 34 HOH HOH . H 5 HOH A 12 214 35 HOH HOH . H 5 HOH A 13 215 37 HOH HOH . H 5 HOH A 14 216 39 HOH HOH . H 5 HOH A 15 217 40 HOH HOH . H 5 HOH A 16 218 42 HOH HOH . H 5 HOH A 17 219 49 HOH HOH . H 5 HOH A 18 220 50 HOH HOH . H 5 HOH A 19 221 51 HOH HOH . H 5 HOH A 20 222 52 HOH HOH . H 5 HOH A 21 223 53 HOH HOH . H 5 HOH A 22 224 55 HOH HOH . H 5 HOH A 23 225 57 HOH HOH . H 5 HOH A 24 226 58 HOH HOH . H 5 HOH A 25 227 61 HOH HOH . H 5 HOH A 26 228 63 HOH HOH . H 5 HOH A 27 229 64 HOH HOH . H 5 HOH A 28 230 69 HOH HOH . H 5 HOH A 29 231 72 HOH HOH . H 5 HOH A 30 232 73 HOH HOH . H 5 HOH A 31 233 75 HOH HOH . H 5 HOH A 32 234 76 HOH HOH . H 5 HOH A 33 235 79 HOH HOH . H 5 HOH A 34 236 80 HOH HOH . H 5 HOH A 35 237 81 HOH HOH . H 5 HOH A 36 238 85 HOH HOH . H 5 HOH A 37 239 88 HOH HOH . H 5 HOH A 38 240 93 HOH HOH . H 5 HOH A 39 241 95 HOH HOH . H 5 HOH A 40 243 98 HOH HOH . H 5 HOH A 41 244 99 HOH HOH . H 5 HOH A 42 245 101 HOH HOH . H 5 HOH A 43 246 102 HOH HOH . H 5 HOH A 44 247 103 HOH HOH . H 5 HOH A 45 248 109 HOH HOH . H 5 HOH A 46 249 125 HOH HOH . H 5 HOH A 47 250 126 HOH HOH . H 5 HOH A 48 251 133 HOH HOH . H 5 HOH A 49 252 134 HOH HOH . H 5 HOH A 50 253 135 HOH HOH . H 5 HOH A 51 254 138 HOH HOH . H 5 HOH A 52 255 139 HOH HOH . H 5 HOH A 53 256 140 HOH HOH . H 5 HOH A 54 257 141 HOH HOH . H 5 HOH A 55 258 142 HOH HOH . H 5 HOH A 56 259 143 HOH HOH . H 5 HOH A 57 260 144 HOH HOH . H 5 HOH A 58 261 145 HOH HOH . H 5 HOH A 59 262 146 HOH HOH . H 5 HOH A 60 263 147 HOH HOH . H 5 HOH A 61 264 148 HOH HOH . H 5 HOH A 62 265 149 HOH HOH . H 5 HOH A 63 266 150 HOH HOH . H 5 HOH A 64 267 151 HOH HOH . H 5 HOH A 65 268 152 HOH HOH . H 5 HOH A 66 269 153 HOH HOH . H 5 HOH A 67 270 154 HOH HOH . H 5 HOH A 68 271 155 HOH HOH . H 5 HOH A 69 272 156 HOH HOH . H 5 HOH A 70 273 157 HOH HOH . H 5 HOH A 71 274 158 HOH HOH . H 5 HOH A 72 275 159 HOH HOH . H 5 HOH A 73 276 160 HOH HOH . H 5 HOH A 74 277 161 HOH HOH . H 5 HOH A 75 278 162 HOH HOH . H 5 HOH A 76 279 163 HOH HOH . H 5 HOH A 77 280 164 HOH HOH . H 5 HOH A 78 281 165 HOH HOH . H 5 HOH A 79 282 166 HOH HOH . H 5 HOH A 80 283 167 HOH HOH . H 5 HOH A 81 284 168 HOH HOH . H 5 HOH A 82 285 169 HOH HOH . H 5 HOH A 83 286 170 HOH HOH . H 5 HOH A 84 288 187 HOH HOH . H 5 HOH A 85 289 188 HOH HOH . H 5 HOH A 86 290 189 HOH HOH . H 5 HOH A 87 291 190 HOH HOH . H 5 HOH A 88 292 191 HOH HOH . H 5 HOH A 89 293 192 HOH HOH . I 5 HOH B 1 242 96 HOH HOH . I 5 HOH B 2 243 186 HOH HOH . I 5 HOH B 3 244 2 HOH HOH . I 5 HOH B 4 245 5 HOH HOH . I 5 HOH B 5 246 6 HOH HOH . I 5 HOH B 6 247 7 HOH HOH . I 5 HOH B 7 248 8 HOH HOH . I 5 HOH B 8 249 10 HOH HOH . I 5 HOH B 9 250 11 HOH HOH . I 5 HOH B 10 251 12 HOH HOH . I 5 HOH B 11 252 13 HOH HOH . I 5 HOH B 12 253 14 HOH HOH . I 5 HOH B 13 254 15 HOH HOH . I 5 HOH B 14 255 16 HOH HOH . I 5 HOH B 15 256 18 HOH HOH . I 5 HOH B 16 257 20 HOH HOH . I 5 HOH B 17 258 23 HOH HOH . I 5 HOH B 18 259 24 HOH HOH . I 5 HOH B 19 260 25 HOH HOH . I 5 HOH B 20 261 26 HOH HOH . I 5 HOH B 21 262 27 HOH HOH . I 5 HOH B 22 263 29 HOH HOH . I 5 HOH B 23 264 30 HOH HOH . I 5 HOH B 24 265 31 HOH HOH . I 5 HOH B 25 266 32 HOH HOH . I 5 HOH B 26 267 36 HOH HOH . I 5 HOH B 27 268 38 HOH HOH . I 5 HOH B 28 269 41 HOH HOH . I 5 HOH B 29 270 43 HOH HOH . I 5 HOH B 30 271 44 HOH HOH . I 5 HOH B 31 272 45 HOH HOH . I 5 HOH B 32 273 46 HOH HOH . I 5 HOH B 33 274 47 HOH HOH . I 5 HOH B 34 275 48 HOH HOH . I 5 HOH B 35 276 54 HOH HOH . I 5 HOH B 36 277 56 HOH HOH . I 5 HOH B 37 278 59 HOH HOH . I 5 HOH B 38 279 60 HOH HOH . I 5 HOH B 39 280 62 HOH HOH . I 5 HOH B 40 281 65 HOH HOH . I 5 HOH B 41 282 66 HOH HOH . I 5 HOH B 42 283 67 HOH HOH . I 5 HOH B 43 284 68 HOH HOH . I 5 HOH B 44 285 70 HOH HOH . I 5 HOH B 45 286 71 HOH HOH . I 5 HOH B 46 287 74 HOH HOH . I 5 HOH B 47 288 77 HOH HOH . I 5 HOH B 48 289 78 HOH HOH . I 5 HOH B 49 290 82 HOH HOH . I 5 HOH B 50 291 83 HOH HOH . I 5 HOH B 51 292 84 HOH HOH . I 5 HOH B 52 293 86 HOH HOH . I 5 HOH B 53 294 87 HOH HOH . I 5 HOH B 54 295 89 HOH HOH . I 5 HOH B 55 296 90 HOH HOH . I 5 HOH B 56 297 91 HOH HOH . I 5 HOH B 57 298 92 HOH HOH . I 5 HOH B 58 299 94 HOH HOH . I 5 HOH B 59 300 97 HOH HOH . I 5 HOH B 60 301 100 HOH HOH . I 5 HOH B 61 302 104 HOH HOH . I 5 HOH B 62 303 105 HOH HOH . I 5 HOH B 63 304 106 HOH HOH . I 5 HOH B 64 305 107 HOH HOH . I 5 HOH B 65 306 108 HOH HOH . I 5 HOH B 66 307 110 HOH HOH . I 5 HOH B 67 308 111 HOH HOH . I 5 HOH B 68 309 112 HOH HOH . I 5 HOH B 69 310 113 HOH HOH . I 5 HOH B 70 311 114 HOH HOH . I 5 HOH B 71 312 115 HOH HOH . I 5 HOH B 72 313 116 HOH HOH . I 5 HOH B 73 314 117 HOH HOH . I 5 HOH B 74 315 118 HOH HOH . I 5 HOH B 75 316 119 HOH HOH . I 5 HOH B 76 317 120 HOH HOH . I 5 HOH B 77 318 121 HOH HOH . I 5 HOH B 78 319 122 HOH HOH . I 5 HOH B 79 320 123 HOH HOH . I 5 HOH B 80 321 124 HOH HOH . I 5 HOH B 81 322 127 HOH HOH . I 5 HOH B 82 323 128 HOH HOH . I 5 HOH B 83 324 129 HOH HOH . I 5 HOH B 84 325 130 HOH HOH . I 5 HOH B 85 326 131 HOH HOH . I 5 HOH B 86 327 132 HOH HOH . I 5 HOH B 87 328 136 HOH HOH . I 5 HOH B 88 329 137 HOH HOH . I 5 HOH B 89 330 171 HOH HOH . I 5 HOH B 90 331 172 HOH HOH . I 5 HOH B 91 332 173 HOH HOH . I 5 HOH B 92 333 174 HOH HOH . I 5 HOH B 93 334 175 HOH HOH . I 5 HOH B 94 335 176 HOH HOH . I 5 HOH B 95 336 177 HOH HOH . I 5 HOH B 96 337 178 HOH HOH . I 5 HOH B 97 338 179 HOH HOH . I 5 HOH B 98 339 180 HOH HOH . I 5 HOH B 99 340 181 HOH HOH . I 5 HOH B 100 341 182 HOH HOH . I 5 HOH B 101 342 183 HOH HOH . I 5 HOH B 102 343 184 HOH HOH . I 5 HOH B 103 344 185 HOH HOH . I 5 HOH B 104 345 193 HOH HOH . I 5 HOH B 105 346 194 HOH HOH . I 5 HOH B 106 347 195 HOH HOH . I 5 HOH B 107 348 196 HOH HOH . I 5 HOH B 108 349 197 HOH HOH . I 5 HOH B 109 350 198 HOH HOH . I 5 HOH B 110 351 199 HOH HOH . I 5 HOH B 111 352 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . F 2 24.893 27.985 -14.315 1 31.2 ? N1 FMN 200 B 1 HETATM 2 C C2 FMN . . . F 2 24.053 26.916 -14.205 1 33 ? C2 FMN 200 B 1 HETATM 3 O O2 FMN . . . F 2 23.04 26.84 -14.903 1 32.42 ? O2 FMN 200 B 1 HETATM 4 N N3 FMN . . . F 2 24.354 25.905 -13.313 1 31.99 ? N3 FMN 200 B 1 HETATM 5 C C4 FMN . . . F 2 25.507 25.934 -12.57 1 33.67 ? C4 FMN 200 B 1 HETATM 6 O O4 FMN . . . F 2 25.697 24.995 -11.782 1 33.64 ? O4 FMN 200 B 1 HETATM 7 C C4A FMN . . . F 2 26.39 27.025 -12.697 1 30.52 ? C4A FMN 200 B 1 HETATM 8 N N5 FMN . . . F 2 27.545 27.099 -11.989 1 30.73 ? N5 FMN 200 B 1 HETATM 9 C C5A FMN . . . F 2 28.383 28.204 -12.14 1 32.64 ? C5A FMN 200 B 1 HETATM 10 C C6 FMN . . . F 2 29.596 28.294 -11.432 1 32.41 ? C6 FMN 200 B 1 HETATM 11 C C7 FMN . . . F 2 30.417 29.407 -11.6 1 32.09 ? C7 FMN 200 B 1 HETATM 12 C C7M FMN . . . F 2 31.701 29.459 -10.815 1 32.36 ? C7M FMN 200 B 1 HETATM 13 C C8 FMN . . . F 2 30.06 30.434 -12.495 1 31.44 ? C8 FMN 200 B 1 HETATM 14 C C8M FMN . . . F 2 30.914 31.699 -12.727 1 33.05 ? C8M FMN 200 B 1 HETATM 15 C C9 FMN . . . F 2 28.874 30.346 -13.184 1 31.39 ? C9 FMN 200 B 1 HETATM 16 C C9A FMN . . . F 2 28.025 29.243 -13.032 1 33.49 ? C9A FMN 200 B 1 HETATM 17 N N10 FMN . . . F 2 26.829 29.183 -13.723 1 32.14 ? N10 FMN 200 B 1 HETATM 18 C C10 FMN . . . F 2 26.041 28.062 -13.58 1 32.7 ? C10 FMN 200 B 1 HETATM 19 C C1' FMN . . . F 2 26.241 30.393 -14.413 1 30.42 ? C1' FMN 200 B 1 HETATM 20 C C2' FMN . . . F 2 25.779 31.451 -13.412 1 29.93 ? C2' FMN 200 B 1 HETATM 21 O O2' FMN . . . F 2 24.762 30.972 -12.568 1 26.82 ? O2' FMN 200 B 1 HETATM 22 C C3' FMN . . . F 2 25.287 32.727 -14.107 1 33.17 ? C3' FMN 200 B 1 HETATM 23 O O3' FMN . . . F 2 26.413 33.43 -14.541 1 34.64 ? O3' FMN 200 B 1 HETATM 24 C C4' FMN . . . F 2 24.479 33.6 -13.153 1 29.71 ? C4' FMN 200 B 1 HETATM 25 O O4' FMN . . . F 2 23.179 33.109 -12.978 1 31.19 ? O4' FMN 200 B 1 HETATM 26 C C5' FMN . . . F 2 24.265 35.018 -13.68 1 30.09 ? C5' FMN 200 B 1 HETATM 27 O O5' FMN . . . F 2 23.674 35.808 -12.695 1 28.11 ? O5' FMN 200 B 1 HETATM 28 P P FMN . . . F 2 24.314 37.286 -12.407 1 28.78 ? P FMN 200 B 1 HETATM 29 O O1P FMN . . . F 2 24.234 37.985 -13.752 1 30.42 ? O1P FMN 200 B 1 HETATM 30 O O2P FMN . . . F 2 23.429 37.968 -11.449 1 25.33 ? O2P FMN 200 B 1 HETATM 31 O O3P FMN . . . F 2 25.778 37.194 -11.999 1 29.65 ? O3P FMN 200 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #