data_3B70 # _model_server_result.job_id FCfIPj0voY6gmThaV0iRvQ _model_server_result.datetime_utc '2024-11-04 23:09:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":372}' # _entry.id 3B70 # _exptl.entry_id 3B70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.13 _cell.angle_gamma 90 _cell.entry_id 3B70 _cell.length_a 42.379 _cell.length_b 44.578 _cell.length_c 92.927 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 250 n n PA O2A NAP sing 251 n n PA O5B NAP sing 252 n n PA O3 NAP sing 253 n n O2A HOA2 NAP sing 254 n n O5B C5B NAP sing 255 n n C5B C4B NAP sing 256 n n C5B H51A NAP sing 257 n n C5B H52A NAP sing 258 n n C4B O4B NAP sing 259 n n C4B C3B NAP sing 260 n n C4B H4B NAP sing 261 n n O4B C1B NAP sing 262 n n C3B O3B NAP sing 263 n n C3B C2B NAP sing 264 n n C3B H3B NAP sing 265 n n O3B HO3A NAP sing 266 n n C2B O2B NAP sing 267 n n C2B C1B NAP sing 268 n n C2B H2B NAP sing 269 n n O2B P2B NAP sing 270 n n C1B N9A NAP sing 271 n n C1B H1B NAP sing 272 n n N9A C8A NAP sing 273 n y N9A C4A NAP sing 274 n y C8A N7A NAP doub 275 n y C8A H8A NAP sing 276 n n N7A C5A NAP sing 277 n y C5A C6A NAP sing 278 n y C5A C4A NAP doub 279 n y C6A N6A NAP sing 280 n n C6A N1A NAP doub 281 n y N6A H61A NAP sing 282 n n N6A H62A NAP sing 283 n n N1A C2A NAP sing 284 n y C2A N3A NAP doub 285 n y C2A H2A NAP sing 286 n n N3A C4A NAP sing 287 n y O3 PN NAP sing 288 n n PN O1N NAP doub 289 n n PN O2N NAP sing 290 n n PN O5D NAP sing 291 n n O5D C5D NAP sing 292 n n C5D C4D NAP sing 293 n n C5D H51N NAP sing 294 n n C5D H52N NAP sing 295 n n C4D O4D NAP sing 296 n n C4D C3D NAP sing 297 n n C4D H4D NAP sing 298 n n O4D C1D NAP sing 299 n n C3D O3D NAP sing 300 n n C3D C2D NAP sing 301 n n C3D H3D NAP sing 302 n n O3D HO3N NAP sing 303 n n C2D O2D NAP sing 304 n n C2D C1D NAP sing 305 n n C2D H2D NAP sing 306 n n O2D HO2N NAP sing 307 n n C1D N1N NAP sing 308 n n C1D H1D NAP sing 309 n n N1N C2N NAP sing 310 n y N1N C6N NAP doub 311 n y C2N C3N NAP doub 312 n y C2N H2N NAP sing 313 n n C3N C7N NAP sing 314 n n C3N C4N NAP sing 315 n y C7N O7N NAP doub 316 n n C7N N7N NAP sing 317 n n N7N H71N NAP sing 318 n n N7N H72N NAP sing 319 n n C4N C5N NAP doub 320 n y C4N H4N NAP sing 321 n n C5N C6N NAP sing 322 n y C5N H5N NAP sing 323 n n C6N H6N NAP sing 324 n n P2B O1X NAP doub 325 n n P2B O2X NAP sing 326 n n P2B O3X NAP sing 327 n n O2X HOP2 NAP sing 328 n n O3X HOP3 NAP sing 329 n n # _atom_sites.entry_id 3B70 _atom_sites.fract_transf_matrix[1][1] 0.023597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005073 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022433 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 372 1 NAP NAP . C 3 GOL A 1 373 1 GOL GOL . D 4 HOH A 1 374 1 HOH HOH . D 4 HOH A 2 375 2 HOH HOH . D 4 HOH A 3 376 3 HOH HOH . D 4 HOH A 4 377 4 HOH HOH . D 4 HOH A 5 378 5 HOH HOH . D 4 HOH A 6 379 6 HOH HOH . D 4 HOH A 7 380 7 HOH HOH . D 4 HOH A 8 381 8 HOH HOH . D 4 HOH A 9 382 9 HOH HOH . D 4 HOH A 10 383 10 HOH HOH . D 4 HOH A 11 384 11 HOH HOH . D 4 HOH A 12 385 12 HOH HOH . D 4 HOH A 13 386 13 HOH HOH . D 4 HOH A 14 387 14 HOH HOH . D 4 HOH A 15 388 15 HOH HOH . D 4 HOH A 16 389 16 HOH HOH . D 4 HOH A 17 390 17 HOH HOH . D 4 HOH A 18 391 18 HOH HOH . D 4 HOH A 19 392 19 HOH HOH . D 4 HOH A 20 393 20 HOH HOH . D 4 HOH A 21 394 21 HOH HOH . D 4 HOH A 22 395 22 HOH HOH . D 4 HOH A 23 396 23 HOH HOH . D 4 HOH A 24 397 24 HOH HOH . D 4 HOH A 25 398 25 HOH HOH . D 4 HOH A 26 399 26 HOH HOH . D 4 HOH A 27 400 27 HOH HOH . D 4 HOH A 28 401 28 HOH HOH . D 4 HOH A 29 402 29 HOH HOH . D 4 HOH A 30 403 30 HOH HOH . D 4 HOH A 31 404 31 HOH HOH . D 4 HOH A 32 405 32 HOH HOH . D 4 HOH A 33 406 33 HOH HOH . D 4 HOH A 34 407 34 HOH HOH . D 4 HOH A 35 408 35 HOH HOH . D 4 HOH A 36 409 36 HOH HOH . D 4 HOH A 37 410 37 HOH HOH . D 4 HOH A 38 411 38 HOH HOH . D 4 HOH A 39 412 39 HOH HOH . D 4 HOH A 40 413 40 HOH HOH . D 4 HOH A 41 414 41 HOH HOH . D 4 HOH A 42 415 42 HOH HOH . D 4 HOH A 43 416 43 HOH HOH . D 4 HOH A 44 417 44 HOH HOH . D 4 HOH A 45 418 45 HOH HOH . D 4 HOH A 46 419 46 HOH HOH . D 4 HOH A 47 420 47 HOH HOH . D 4 HOH A 48 421 48 HOH HOH . D 4 HOH A 49 422 49 HOH HOH . D 4 HOH A 50 423 50 HOH HOH . D 4 HOH A 51 424 51 HOH HOH . D 4 HOH A 52 425 52 HOH HOH . D 4 HOH A 53 426 53 HOH HOH . D 4 HOH A 54 427 54 HOH HOH . D 4 HOH A 55 428 55 HOH HOH . D 4 HOH A 56 429 56 HOH HOH . D 4 HOH A 57 430 57 HOH HOH . D 4 HOH A 58 431 58 HOH HOH . D 4 HOH A 59 432 59 HOH HOH . D 4 HOH A 60 433 60 HOH HOH . D 4 HOH A 61 434 61 HOH HOH . D 4 HOH A 62 435 62 HOH HOH . D 4 HOH A 63 436 63 HOH HOH . D 4 HOH A 64 437 64 HOH HOH . D 4 HOH A 65 438 65 HOH HOH . D 4 HOH A 66 439 66 HOH HOH . D 4 HOH A 67 440 67 HOH HOH . D 4 HOH A 68 441 68 HOH HOH . D 4 HOH A 69 442 69 HOH HOH . D 4 HOH A 70 443 70 HOH HOH . D 4 HOH A 71 444 71 HOH HOH . D 4 HOH A 72 445 72 HOH HOH . D 4 HOH A 73 446 73 HOH HOH . D 4 HOH A 74 447 74 HOH HOH . D 4 HOH A 75 448 75 HOH HOH . D 4 HOH A 76 449 76 HOH HOH . D 4 HOH A 77 450 77 HOH HOH . D 4 HOH A 78 451 78 HOH HOH . D 4 HOH A 79 452 79 HOH HOH . D 4 HOH A 80 453 80 HOH HOH . D 4 HOH A 81 454 81 HOH HOH . D 4 HOH A 82 455 82 HOH HOH . D 4 HOH A 83 456 83 HOH HOH . D 4 HOH A 84 457 84 HOH HOH . D 4 HOH A 85 458 85 HOH HOH . D 4 HOH A 86 459 86 HOH HOH . D 4 HOH A 87 460 87 HOH HOH . D 4 HOH A 88 461 88 HOH HOH . D 4 HOH A 89 462 89 HOH HOH . D 4 HOH A 90 463 90 HOH HOH . D 4 HOH A 91 464 91 HOH HOH . D 4 HOH A 92 465 92 HOH HOH . D 4 HOH A 93 466 93 HOH HOH . D 4 HOH A 94 467 94 HOH HOH . D 4 HOH A 95 468 95 HOH HOH . D 4 HOH A 96 469 96 HOH HOH . D 4 HOH A 97 470 97 HOH HOH . D 4 HOH A 98 471 98 HOH HOH . D 4 HOH A 99 472 99 HOH HOH . D 4 HOH A 100 473 100 HOH HOH . D 4 HOH A 101 474 101 HOH HOH . D 4 HOH A 102 475 102 HOH HOH . D 4 HOH A 103 476 103 HOH HOH . D 4 HOH A 104 477 104 HOH HOH . D 4 HOH A 105 478 105 HOH HOH . D 4 HOH A 106 479 106 HOH HOH . D 4 HOH A 107 480 107 HOH HOH . D 4 HOH A 108 481 108 HOH HOH . D 4 HOH A 109 482 109 HOH HOH . D 4 HOH A 110 483 110 HOH HOH . D 4 HOH A 111 484 111 HOH HOH . D 4 HOH A 112 485 112 HOH HOH . D 4 HOH A 113 486 113 HOH HOH . D 4 HOH A 114 487 114 HOH HOH . D 4 HOH A 115 488 115 HOH HOH . D 4 HOH A 116 489 116 HOH HOH . D 4 HOH A 117 490 117 HOH HOH . D 4 HOH A 118 491 118 HOH HOH . D 4 HOH A 119 492 119 HOH HOH . D 4 HOH A 120 493 120 HOH HOH . D 4 HOH A 121 494 121 HOH HOH . D 4 HOH A 122 495 122 HOH HOH . D 4 HOH A 123 496 123 HOH HOH . D 4 HOH A 124 497 124 HOH HOH . D 4 HOH A 125 498 125 HOH HOH . D 4 HOH A 126 499 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 39.534 -14.772 73.145 1 16.75 ? PA NAP 372 A 1 HETATM 2 O O1A NAP . . . B 2 38.279 -14.888 72.409 1 19.82 ? O1A NAP 372 A 1 HETATM 3 O O2A NAP . . . B 2 40.696 -14.294 72.43 1 16.87 ? O2A NAP 372 A 1 HETATM 4 O O5B NAP . . . B 2 39.368 -13.876 74.497 1 17.26 ? O5B NAP 372 A 1 HETATM 5 C C5B NAP . . . B 2 39.141 -12.486 74.424 1 18.54 ? C5B NAP 372 A 1 HETATM 6 C C4B NAP . . . B 2 38.491 -12.082 75.764 1 16.45 ? C4B NAP 372 A 1 HETATM 7 O O4B NAP . . . B 2 39.403 -12.056 76.862 1 16.07 ? O4B NAP 372 A 1 HETATM 8 C C3B NAP . . . B 2 37.874 -10.68 75.654 1 20.76 ? C3B NAP 372 A 1 HETATM 9 O O3B NAP . . . B 2 36.52 -10.847 75.226 1 28.35 ? O3B NAP 372 A 1 HETATM 10 C C2B NAP . . . B 2 37.9 -10.214 77.108 1 17.38 ? C2B NAP 372 A 1 HETATM 11 O O2B NAP . . . B 2 36.64 -10.508 77.647 1 18.96 ? O2B NAP 372 A 1 HETATM 12 C C1B NAP . . . B 2 38.869 -11.124 77.842 1 17.48 ? C1B NAP 372 A 1 HETATM 13 N N9A NAP . . . B 2 40.033 -10.481 78.408 1 17.26 ? N9A NAP 372 A 1 HETATM 14 C C8A NAP . . . B 2 41.138 -10.039 77.714 1 19.95 ? C8A NAP 372 A 1 HETATM 15 N N7A NAP . . . B 2 42.042 -9.596 78.61 1 19.57 ? N7A NAP 372 A 1 HETATM 16 C C5A NAP . . . B 2 41.552 -9.813 79.868 1 20.34 ? C5A NAP 372 A 1 HETATM 17 C C6A NAP . . . B 2 42.061 -9.545 81.152 1 19.54 ? C6A NAP 372 A 1 HETATM 18 N N6A NAP . . . B 2 43.267 -9.014 81.322 1 19.08 ? N6A NAP 372 A 1 HETATM 19 N N1A NAP . . . B 2 41.297 -9.92 82.246 1 19.12 ? N1A NAP 372 A 1 HETATM 20 C C2A NAP . . . B 2 40.03 -10.436 82.091 1 17.22 ? C2A NAP 372 A 1 HETATM 21 N N3A NAP . . . B 2 39.516 -10.702 80.828 1 18.43 ? N3A NAP 372 A 1 HETATM 22 C C4A NAP . . . B 2 40.295 -10.388 79.745 1 16.71 ? C4A NAP 372 A 1 HETATM 23 O O3 NAP . . . B 2 39.909 -16.174 73.857 1 17.66 ? O3 NAP 372 A 1 HETATM 24 P PN NAP . . . B 2 40.643 -17.544 73.443 1 17.43 ? PN NAP 372 A 1 HETATM 25 O O1N NAP . . . B 2 39.9 -18.591 74.169 1 17.73 ? O1N NAP 372 A 1 HETATM 26 O O2N NAP . . . B 2 40.729 -17.589 71.993 1 16.5 ? O2N NAP 372 A 1 HETATM 27 O O5D NAP . . . B 2 42.101 -17.376 74.047 1 14.78 ? O5D NAP 372 A 1 HETATM 28 C C5D NAP . . . B 2 42.223 -17.082 75.439 1 18.29 ? C5D NAP 372 A 1 HETATM 29 C C4D NAP . . . B 2 43.63 -17.36 75.933 1 20.07 ? C4D NAP 372 A 1 HETATM 30 O O4D NAP . . . B 2 43.827 -18.768 75.988 1 21.22 ? O4D NAP 372 A 1 HETATM 31 C C3D NAP . . . B 2 44.676 -16.8 74.97 1 21.86 ? C3D NAP 372 A 1 HETATM 32 O O3D NAP . . . B 2 45.759 -16.356 75.744 1 20.75 ? O3D NAP 372 A 1 HETATM 33 C C2D NAP . . . B 2 45.128 -18.031 74.21 1 22.88 ? C2D NAP 372 A 1 HETATM 34 O O2D NAP . . . B 2 46.482 -17.881 73.799 1 22.68 ? O2D NAP 372 A 1 HETATM 35 C C1D NAP . . . B 2 44.939 -19.143 75.247 1 20.16 ? C1D NAP 372 A 1 HETATM 36 N N1N NAP . . . B 2 44.63 -20.401 74.567 1 19.41 ? N1N NAP 372 A 1 HETATM 37 C C2N NAP . . . B 2 45.612 -21.343 74.513 1 18.98 ? C2N NAP 372 A 1 HETATM 38 C C3N NAP . . . B 2 45.354 -22.532 73.871 1 19.06 ? C3N NAP 372 A 1 HETATM 39 C C7N NAP . . . B 2 46.431 -23.583 73.891 1 23.78 ? C7N NAP 372 A 1 HETATM 40 O O7N NAP . . . B 2 46.418 -24.498 72.856 1 24.11 ? O7N NAP 372 A 1 HETATM 41 N N7N NAP . . . B 2 47.36 -23.6 74.846 1 21.95 ? N7N NAP 372 A 1 HETATM 42 C C4N NAP . . . B 2 44.125 -22.77 73.233 1 20.58 ? C4N NAP 372 A 1 HETATM 43 C C5N NAP . . . B 2 43.14 -21.773 73.288 1 18.63 ? C5N NAP 372 A 1 HETATM 44 C C6N NAP . . . B 2 43.42 -20.593 73.956 1 19.33 ? C6N NAP 372 A 1 HETATM 45 P P2B NAP . . . B 2 35.626 -9.355 78.224 1 20.07 ? P2B NAP 372 A 1 HETATM 46 O O1X NAP . . . B 2 36.274 -8.835 79.487 1 18.68 ? O1X NAP 372 A 1 HETATM 47 O O2X NAP . . . B 2 34.262 -9.99 78.391 1 18.82 ? O2X NAP 372 A 1 HETATM 48 O O3X NAP . . . B 2 35.579 -8.304 77.135 1 19.23 ? O3X NAP 372 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #