data_3B72 # _model_server_result.job_id 256Lmtxixb-UhchjrGaTAg _model_server_result.datetime_utc '2024-10-12 14:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":5}' # _entry.id 3B72 # _exptl.entry_id 3B72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B72 _cell.length_a 77.9 _cell.length_b 77.9 _cell.length_c 37.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 1006 1_555 A SG CYS 145 A CYS 1127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf2 A SG CYS 48 A CYS 1030 1_555 A SG CYS 133 A CYS 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 82 A CYS 1064 1_555 A SG CYS 98 A CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 A SG CYS 94 A CYS 1076 1_555 A SG CYS 112 A CYS 1094 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 D NA NA . A NA 4 1_555 A O SER 78 A SER 1060 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 D NA NA . A NA 4 1_555 A O CYS 82 A CYS 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc3 D NA NA . A NA 4 1_555 A OG SER 90 A SER 1072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc4 D NA NA . A NA 4 1_555 A O ARG 91 A ARG 1073 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc5 D NA NA . A NA 4 1_555 G O HOH . A HOH 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 3B72 _atom_sites.fract_transf_matrix[1][1] 0.012837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 3 3 CL CL . C 2 CL A 1 2 2 CL CL . D 3 NA A 1 4 4 NA NA . E 4 MPD A 1 1 1 MPD FRA . F 4 MPD A 1 5 5 MPD FRA . G 5 HOH A 1 1201 1201 HOH HOH . G 5 HOH A 2 1202 1202 HOH HOH . G 5 HOH A 3 1203 1203 HOH HOH . G 5 HOH A 4 1204 1204 HOH HOH . G 5 HOH A 5 1205 1205 HOH HOH . G 5 HOH A 6 1206 1206 HOH HOH . G 5 HOH A 7 1207 1207 HOH HOH . G 5 HOH A 8 1208 1208 HOH HOH . G 5 HOH A 9 1209 1209 HOH HOH . G 5 HOH A 10 1210 1210 HOH HOH . G 5 HOH A 11 1211 1211 HOH HOH . G 5 HOH A 12 1212 1212 HOH HOH . G 5 HOH A 13 1213 1213 HOH HOH . G 5 HOH A 14 1214 1214 HOH HOH . G 5 HOH A 15 1215 1215 HOH HOH . G 5 HOH A 16 1216 1216 HOH HOH . G 5 HOH A 17 1217 1217 HOH HOH . G 5 HOH A 18 1218 1218 HOH HOH . G 5 HOH A 19 1219 1219 HOH HOH . G 5 HOH A 20 1220 1220 HOH HOH . G 5 HOH A 21 1221 1221 HOH HOH . G 5 HOH A 22 1222 1222 HOH HOH . G 5 HOH A 23 1223 1223 HOH HOH . G 5 HOH A 24 1224 1224 HOH HOH . G 5 HOH A 25 1225 1225 HOH HOH . G 5 HOH A 26 1226 1226 HOH HOH . G 5 HOH A 27 1227 1227 HOH HOH . G 5 HOH A 28 1228 1228 HOH HOH . G 5 HOH A 29 1229 1229 HOH HOH . G 5 HOH A 30 1230 1230 HOH HOH . G 5 HOH A 31 1231 1231 HOH HOH . G 5 HOH A 32 1232 1232 HOH HOH . G 5 HOH A 33 1233 1233 HOH HOH . G 5 HOH A 34 1234 1234 HOH HOH . G 5 HOH A 35 1235 1235 HOH HOH . G 5 HOH A 36 1236 1236 HOH HOH . G 5 HOH A 37 1237 1237 HOH HOH . G 5 HOH A 38 1238 1238 HOH HOH . G 5 HOH A 39 1239 1239 HOH HOH . G 5 HOH A 40 1240 1240 HOH HOH . G 5 HOH A 41 1241 1241 HOH HOH . G 5 HOH A 42 1242 1242 HOH HOH . G 5 HOH A 43 1243 1243 HOH HOH . G 5 HOH A 44 1244 1244 HOH HOH . G 5 HOH A 45 1245 1245 HOH HOH . G 5 HOH A 46 1246 1246 HOH HOH . G 5 HOH A 47 1247 1247 HOH HOH . G 5 HOH A 48 1248 1248 HOH HOH . G 5 HOH A 49 1249 1249 HOH HOH . G 5 HOH A 50 1250 1250 HOH HOH . G 5 HOH A 51 1251 1251 HOH HOH . G 5 HOH A 52 1252 1252 HOH HOH . G 5 HOH A 53 1253 1253 HOH HOH . G 5 HOH A 54 1254 1254 HOH HOH . G 5 HOH A 55 1255 1255 HOH HOH . G 5 HOH A 56 1256 1256 HOH HOH . G 5 HOH A 57 1257 1257 HOH HOH . G 5 HOH A 58 1258 1258 HOH HOH . G 5 HOH A 59 1259 1259 HOH HOH . G 5 HOH A 60 1260 1260 HOH HOH . G 5 HOH A 61 1261 1261 HOH HOH . G 5 HOH A 62 1262 1262 HOH HOH . G 5 HOH A 63 1263 1263 HOH HOH . G 5 HOH A 64 1264 1264 HOH HOH . G 5 HOH A 65 1265 1265 HOH HOH . G 5 HOH A 66 1266 1266 HOH HOH . G 5 HOH A 67 1267 1267 HOH HOH . G 5 HOH A 68 1268 1268 HOH HOH . G 5 HOH A 69 1269 1269 HOH HOH . G 5 HOH A 70 1270 1270 HOH HOH . G 5 HOH A 71 1271 1271 HOH HOH . G 5 HOH A 72 1272 1272 HOH HOH . G 5 HOH A 73 1273 1273 HOH HOH . G 5 HOH A 74 1274 1274 HOH HOH . G 5 HOH A 75 1275 1275 HOH HOH . G 5 HOH A 76 1276 1276 HOH HOH . G 5 HOH A 77 1277 1277 HOH HOH . G 5 HOH A 78 1278 1278 HOH HOH . G 5 HOH A 79 1279 1279 HOH HOH . G 5 HOH A 80 1280 1280 HOH HOH . G 5 HOH A 81 1281 1281 HOH HOH . G 5 HOH A 82 1282 1282 HOH HOH . G 5 HOH A 83 1283 1283 HOH HOH . G 5 HOH A 84 1284 1284 HOH HOH . G 5 HOH A 85 1285 1285 HOH HOH . G 5 HOH A 86 1286 1286 HOH HOH . G 5 HOH A 87 1287 1287 HOH HOH . G 5 HOH A 88 1288 1288 HOH HOH . G 5 HOH A 89 1289 1289 HOH HOH . G 5 HOH A 90 1290 1290 HOH HOH . G 5 HOH A 91 1291 1291 HOH HOH . G 5 HOH A 92 1292 1292 HOH HOH . G 5 HOH A 93 1293 1293 HOH HOH . G 5 HOH A 94 1294 1294 HOH HOH . G 5 HOH A 95 1295 1295 HOH HOH . G 5 HOH A 96 1296 1296 HOH HOH . G 5 HOH A 97 1298 1298 HOH HOH . G 5 HOH A 98 1299 1299 HOH HOH . G 5 HOH A 99 1300 1300 HOH HOH . G 5 HOH A 100 1301 1301 HOH HOH . G 5 HOH A 101 1302 1302 HOH HOH . G 5 HOH A 102 1303 1303 HOH HOH . G 5 HOH A 103 1304 1304 HOH HOH . G 5 HOH A 104 1305 1305 HOH HOH . G 5 HOH A 105 1306 1306 HOH HOH . G 5 HOH A 106 1307 1307 HOH HOH . G 5 HOH A 107 1308 1308 HOH HOH . G 5 HOH A 108 1309 1309 HOH HOH . G 5 HOH A 109 1310 1310 HOH HOH . G 5 HOH A 110 1312 1312 HOH HOH . G 5 HOH A 111 1313 1313 HOH HOH . G 5 HOH A 112 1314 1314 HOH HOH . G 5 HOH A 113 1316 1316 HOH HOH . G 5 HOH A 114 1317 1317 HOH HOH . G 5 HOH A 115 1318 1318 HOH HOH . G 5 HOH A 116 1319 1319 HOH HOH . G 5 HOH A 117 1320 1320 HOH HOH . G 5 HOH A 118 1321 1321 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 4 5.44 24.44 8.161 1 13.44 ? C1 MPD 5 A 1 HETATM 2 C C2 MPD . . . F 4 6.881 24.266 8.766 1 33.55 ? C2 MPD 5 A 1 HETATM 3 O O2 MPD . . . F 4 6.913 25.222 9.852 1 25.46 ? O2 MPD 5 A 1 HETATM 4 C CM MPD . . . F 4 7.977 24.622 7.735 1 53.77 ? CM MPD 5 A 1 HETATM 5 C C3 MPD . . . F 4 7.096 22.861 9.385 1 22.42 ? C3 MPD 5 A 1 HETATM 6 C C4 MPD . . . F 4 8.055 22.702 10.621 1 30.19 ? C4 MPD 5 A 1 HETATM 7 O O4 MPD . . . F 4 7.691 23.736 11.546 1 30.14 ? O4 MPD 5 A 1 HETATM 8 C C5 MPD . . . F 4 7.838 21.329 11.301 1 28.32 ? C5 MPD 5 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #