data_3B76
#
_model_server_result.job_id            zEP6rHBM1mX0dYLcNXLrCQ 
_model_server_result.datetime_utc      '2025-07-31 15:22:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3b76 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    3B76 
#
_exptl.entry_id    3B76 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3B76 
_cell.length_a            49.782 
_cell.length_b            58.449 
_cell.length_c            73.741 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3B76 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O HOH . A HOH 115 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc2 F O HOH . A HOH 136 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc3 A O ALA 46 A ALA 430 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc4 A O HIS 48 A HIS 432 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc5 A O TRP 51 A TRP 435 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc6 A OD1 ASP 52 A ASP 436 1_555 C NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3B76 
_atom_sites.fract_transf_matrix[1][1]    0.020087 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017109 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 601 1 NA NA . 
D 3 EDO B 1 601 1 EDO EDO . 
E 3 EDO B 1 602 2 EDO EDO . 
F 4 HOH A 1 2 2 HOH HOH . 
F 4 HOH A 2 4 4 HOH HOH . 
F 4 HOH A 3 5 5 HOH HOH . 
F 4 HOH A 4 7 7 HOH HOH . 
F 4 HOH A 5 12 12 HOH HOH . 
F 4 HOH A 6 13 13 HOH HOH . 
F 4 HOH A 7 14 14 HOH HOH . 
F 4 HOH A 8 15 15 HOH HOH . 
F 4 HOH A 9 17 17 HOH HOH . 
F 4 HOH A 10 18 18 HOH HOH . 
F 4 HOH A 11 22 22 HOH HOH . 
F 4 HOH A 12 25 25 HOH HOH . 
F 4 HOH A 13 26 26 HOH HOH . 
F 4 HOH A 14 30 30 HOH HOH . 
F 4 HOH A 15 36 36 HOH HOH . 
F 4 HOH A 16 40 40 HOH HOH . 
F 4 HOH A 17 44 44 HOH HOH . 
F 4 HOH A 18 47 47 HOH HOH . 
F 4 HOH A 19 52 52 HOH HOH . 
F 4 HOH A 20 56 56 HOH HOH . 
F 4 HOH A 21 59 59 HOH HOH . 
F 4 HOH A 22 62 62 HOH HOH . 
F 4 HOH A 23 63 63 HOH HOH . 
F 4 HOH A 24 70 70 HOH HOH . 
F 4 HOH A 25 73 73 HOH HOH . 
F 4 HOH A 26 76 76 HOH HOH . 
F 4 HOH A 27 78 78 HOH HOH . 
F 4 HOH A 28 81 81 HOH HOH . 
F 4 HOH A 29 82 82 HOH HOH . 
F 4 HOH A 30 86 86 HOH HOH . 
F 4 HOH A 31 87 87 HOH HOH . 
F 4 HOH A 32 88 88 HOH HOH . 
F 4 HOH A 33 89 89 HOH HOH . 
F 4 HOH A 34 91 91 HOH HOH . 
F 4 HOH A 35 95 95 HOH HOH . 
F 4 HOH A 36 97 97 HOH HOH . 
F 4 HOH A 37 98 98 HOH HOH . 
F 4 HOH A 38 102 102 HOH HOH . 
F 4 HOH A 39 103 103 HOH HOH . 
F 4 HOH A 40 110 110 HOH HOH . 
F 4 HOH A 41 112 112 HOH HOH . 
F 4 HOH A 42 114 114 HOH HOH . 
F 4 HOH A 43 115 115 HOH HOH . 
F 4 HOH A 44 116 116 HOH HOH . 
F 4 HOH A 45 119 119 HOH HOH . 
F 4 HOH A 46 121 121 HOH HOH . 
F 4 HOH A 47 122 122 HOH HOH . 
F 4 HOH A 48 123 123 HOH HOH . 
F 4 HOH A 49 124 124 HOH HOH . 
F 4 HOH A 50 125 125 HOH HOH . 
F 4 HOH A 51 126 126 HOH HOH . 
F 4 HOH A 52 130 130 HOH HOH . 
F 4 HOH A 53 133 133 HOH HOH . 
F 4 HOH A 54 134 134 HOH HOH . 
F 4 HOH A 55 135 135 HOH HOH . 
F 4 HOH A 56 136 136 HOH HOH . 
F 4 HOH A 57 138 138 HOH HOH . 
F 4 HOH A 58 139 139 HOH HOH . 
F 4 HOH A 59 144 144 HOH HOH . 
F 4 HOH A 60 145 145 HOH HOH . 
G 4 HOH B 1 3 3 HOH HOH . 
G 4 HOH B 2 6 6 HOH HOH . 
G 4 HOH B 3 8 8 HOH HOH . 
G 4 HOH B 4 11 11 HOH HOH . 
G 4 HOH B 5 16 16 HOH HOH . 
G 4 HOH B 6 23 23 HOH HOH . 
G 4 HOH B 7 24 24 HOH HOH . 
G 4 HOH B 8 27 27 HOH HOH . 
G 4 HOH B 9 28 28 HOH HOH . 
G 4 HOH B 10 29 29 HOH HOH . 
G 4 HOH B 11 31 31 HOH HOH . 
G 4 HOH B 12 32 32 HOH HOH . 
G 4 HOH B 13 33 33 HOH HOH . 
G 4 HOH B 14 37 37 HOH HOH . 
G 4 HOH B 15 38 38 HOH HOH . 
G 4 HOH B 16 39 39 HOH HOH . 
G 4 HOH B 17 41 41 HOH HOH . 
G 4 HOH B 18 42 42 HOH HOH . 
G 4 HOH B 19 45 45 HOH HOH . 
G 4 HOH B 20 48 48 HOH HOH . 
G 4 HOH B 21 49 49 HOH HOH . 
G 4 HOH B 22 50 50 HOH HOH . 
G 4 HOH B 23 51 51 HOH HOH . 
G 4 HOH B 24 60 60 HOH HOH . 
G 4 HOH B 25 61 61 HOH HOH . 
G 4 HOH B 26 64 64 HOH HOH . 
G 4 HOH B 27 65 65 HOH HOH . 
G 4 HOH B 28 71 71 HOH HOH . 
G 4 HOH B 29 72 72 HOH HOH . 
G 4 HOH B 30 74 74 HOH HOH . 
G 4 HOH B 31 77 77 HOH HOH . 
G 4 HOH B 32 79 79 HOH HOH . 
G 4 HOH B 33 80 80 HOH HOH . 
G 4 HOH B 34 84 84 HOH HOH . 
G 4 HOH B 35 85 85 HOH HOH . 
G 4 HOH B 36 90 90 HOH HOH . 
G 4 HOH B 37 92 92 HOH HOH . 
G 4 HOH B 38 93 93 HOH HOH . 
G 4 HOH B 39 94 94 HOH HOH . 
G 4 HOH B 40 96 96 HOH HOH . 
G 4 HOH B 41 99 99 HOH HOH . 
G 4 HOH B 42 100 100 HOH HOH . 
G 4 HOH B 43 101 101 HOH HOH . 
G 4 HOH B 44 104 104 HOH HOH . 
G 4 HOH B 45 105 105 HOH HOH . 
G 4 HOH B 46 106 106 HOH HOH . 
G 4 HOH B 47 107 107 HOH HOH . 
G 4 HOH B 48 108 108 HOH HOH . 
G 4 HOH B 49 109 109 HOH HOH . 
G 4 HOH B 50 111 111 HOH HOH . 
G 4 HOH B 51 113 113 HOH HOH . 
G 4 HOH B 52 117 117 HOH HOH . 
G 4 HOH B 53 118 118 HOH HOH . 
G 4 HOH B 54 120 120 HOH HOH . 
G 4 HOH B 55 127 127 HOH HOH . 
G 4 HOH B 56 128 128 HOH HOH . 
G 4 HOH B 57 129 129 HOH HOH . 
G 4 HOH B 58 131 131 HOH HOH . 
G 4 HOH B 59 132 132 HOH HOH . 
G 4 HOH B 60 137 137 HOH HOH . 
G 4 HOH B 61 140 140 HOH HOH . 
G 4 HOH B 62 141 141 HOH HOH . 
G 4 HOH B 63 142 142 HOH HOH . 
G 4 HOH B 64 143 143 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -6.214 
_atom_site.Cartn_y               0.954 
_atom_site.Cartn_z               11.298 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        14.51 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           1227 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#