data_3B7O # _model_server_result.job_id gtf6M1EgiePRZ0DUn133pQ _model_server_result.datetime_utc '2024-11-18 18:43:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3B7O # _exptl.entry_id 3B7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B7O _cell.length_a 44.813 _cell.length_b 86.496 _cell.length_c 166.555 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B7O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 237 n n C1 O2 MLT sing 238 n n C1 C2 MLT sing 239 n n C2 O3 MLT sing 240 n n C2 C3 MLT sing 241 n n C2 H2 MLT sing 242 n n O3 HO3 MLT sing 243 n n C3 C4 MLT sing 244 n n C3 H31 MLT sing 245 n n C3 H32 MLT sing 246 n n C4 O4 MLT doub 247 n n C4 O5 MLT sing 248 n n O5 HO5 MLT sing 249 n n O2 H6 MLT sing 250 n n # _atom_sites.entry_id 3B7O _atom_sites.fract_transf_matrix[1][1] 0.022315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLT A 1 1 1 MLT MLT . C 3 HOH A 1 530 1 HOH HOH . C 3 HOH A 2 531 2 HOH HOH . C 3 HOH A 3 532 3 HOH HOH . C 3 HOH A 4 533 4 HOH HOH . C 3 HOH A 5 534 5 HOH HOH . C 3 HOH A 6 535 6 HOH HOH . C 3 HOH A 7 536 7 HOH HOH . C 3 HOH A 8 537 8 HOH HOH . C 3 HOH A 9 538 9 HOH HOH . C 3 HOH A 10 539 10 HOH HOH . C 3 HOH A 11 540 11 HOH HOH . C 3 HOH A 12 541 12 HOH HOH . C 3 HOH A 13 542 13 HOH HOH . C 3 HOH A 14 543 14 HOH HOH . C 3 HOH A 15 544 16 HOH HOH . C 3 HOH A 16 545 18 HOH HOH . C 3 HOH A 17 546 19 HOH HOH . C 3 HOH A 18 547 20 HOH HOH . C 3 HOH A 19 548 21 HOH HOH . C 3 HOH A 20 549 22 HOH HOH . C 3 HOH A 21 550 23 HOH HOH . C 3 HOH A 22 551 24 HOH HOH . C 3 HOH A 23 552 25 HOH HOH . C 3 HOH A 24 553 26 HOH HOH . C 3 HOH A 25 554 27 HOH HOH . C 3 HOH A 26 555 28 HOH HOH . C 3 HOH A 27 556 29 HOH HOH . C 3 HOH A 28 557 30 HOH HOH . C 3 HOH A 29 558 31 HOH HOH . C 3 HOH A 30 559 32 HOH HOH . C 3 HOH A 31 560 33 HOH HOH . C 3 HOH A 32 561 34 HOH HOH . C 3 HOH A 33 562 35 HOH HOH . C 3 HOH A 34 563 36 HOH HOH . C 3 HOH A 35 564 37 HOH HOH . C 3 HOH A 36 565 38 HOH HOH . C 3 HOH A 37 566 39 HOH HOH . C 3 HOH A 38 567 40 HOH HOH . C 3 HOH A 39 568 41 HOH HOH . C 3 HOH A 40 569 42 HOH HOH . C 3 HOH A 41 570 43 HOH HOH . C 3 HOH A 42 571 44 HOH HOH . C 3 HOH A 43 572 45 HOH HOH . C 3 HOH A 44 573 46 HOH HOH . C 3 HOH A 45 574 47 HOH HOH . C 3 HOH A 46 575 50 HOH HOH . C 3 HOH A 47 576 51 HOH HOH . C 3 HOH A 48 577 52 HOH HOH . C 3 HOH A 49 578 53 HOH HOH . C 3 HOH A 50 579 55 HOH HOH . C 3 HOH A 51 580 56 HOH HOH . C 3 HOH A 52 581 57 HOH HOH . C 3 HOH A 53 582 58 HOH HOH . C 3 HOH A 54 583 59 HOH HOH . C 3 HOH A 55 584 60 HOH HOH . C 3 HOH A 56 585 61 HOH HOH . C 3 HOH A 57 586 62 HOH HOH . C 3 HOH A 58 587 63 HOH HOH . C 3 HOH A 59 588 64 HOH HOH . C 3 HOH A 60 589 65 HOH HOH . C 3 HOH A 61 590 66 HOH HOH . C 3 HOH A 62 591 68 HOH HOH . C 3 HOH A 63 592 69 HOH HOH . C 3 HOH A 64 593 70 HOH HOH . C 3 HOH A 65 594 71 HOH HOH . C 3 HOH A 66 595 72 HOH HOH . C 3 HOH A 67 596 73 HOH HOH . C 3 HOH A 68 597 74 HOH HOH . C 3 HOH A 69 598 75 HOH HOH . C 3 HOH A 70 599 76 HOH HOH . C 3 HOH A 71 600 77 HOH HOH . C 3 HOH A 72 601 78 HOH HOH . C 3 HOH A 73 602 79 HOH HOH . C 3 HOH A 74 603 80 HOH HOH . C 3 HOH A 75 604 81 HOH HOH . C 3 HOH A 76 605 82 HOH HOH . C 3 HOH A 77 606 83 HOH HOH . C 3 HOH A 78 607 84 HOH HOH . C 3 HOH A 79 608 85 HOH HOH . C 3 HOH A 80 609 86 HOH HOH . C 3 HOH A 81 610 87 HOH HOH . C 3 HOH A 82 611 88 HOH HOH . C 3 HOH A 83 612 89 HOH HOH . C 3 HOH A 84 613 90 HOH HOH . C 3 HOH A 85 614 91 HOH HOH . C 3 HOH A 86 615 92 HOH HOH . C 3 HOH A 87 616 93 HOH HOH . C 3 HOH A 88 617 94 HOH HOH . C 3 HOH A 89 618 95 HOH HOH . C 3 HOH A 90 619 96 HOH HOH . C 3 HOH A 91 620 98 HOH HOH . C 3 HOH A 92 621 99 HOH HOH . C 3 HOH A 93 622 100 HOH HOH . C 3 HOH A 94 623 101 HOH HOH . C 3 HOH A 95 624 102 HOH HOH . C 3 HOH A 96 625 103 HOH HOH . C 3 HOH A 97 626 105 HOH HOH . C 3 HOH A 98 627 106 HOH HOH . C 3 HOH A 99 628 107 HOH HOH . C 3 HOH A 100 629 108 HOH HOH . C 3 HOH A 101 630 109 HOH HOH . C 3 HOH A 102 631 110 HOH HOH . C 3 HOH A 103 632 111 HOH HOH . C 3 HOH A 104 633 112 HOH HOH . C 3 HOH A 105 634 113 HOH HOH . C 3 HOH A 106 635 114 HOH HOH . C 3 HOH A 107 636 115 HOH HOH . C 3 HOH A 108 637 116 HOH HOH . C 3 HOH A 109 638 117 HOH HOH . C 3 HOH A 110 639 118 HOH HOH . C 3 HOH A 111 640 119 HOH HOH . C 3 HOH A 112 641 120 HOH HOH . C 3 HOH A 113 642 121 HOH HOH . C 3 HOH A 114 643 122 HOH HOH . C 3 HOH A 115 644 123 HOH HOH . C 3 HOH A 116 645 124 HOH HOH . C 3 HOH A 117 646 125 HOH HOH . C 3 HOH A 118 647 126 HOH HOH . C 3 HOH A 119 648 127 HOH HOH . C 3 HOH A 120 649 130 HOH HOH . C 3 HOH A 121 650 131 HOH HOH . C 3 HOH A 122 651 132 HOH HOH . C 3 HOH A 123 652 133 HOH HOH . C 3 HOH A 124 653 134 HOH HOH . C 3 HOH A 125 654 135 HOH HOH . C 3 HOH A 126 655 137 HOH HOH . C 3 HOH A 127 656 138 HOH HOH . C 3 HOH A 128 657 139 HOH HOH . C 3 HOH A 129 658 140 HOH HOH . C 3 HOH A 130 659 141 HOH HOH . C 3 HOH A 131 660 142 HOH HOH . C 3 HOH A 132 661 143 HOH HOH . C 3 HOH A 133 662 144 HOH HOH . C 3 HOH A 134 663 145 HOH HOH . C 3 HOH A 135 664 146 HOH HOH . C 3 HOH A 136 665 147 HOH HOH . C 3 HOH A 137 666 149 HOH HOH . C 3 HOH A 138 667 150 HOH HOH . C 3 HOH A 139 668 151 HOH HOH . C 3 HOH A 140 669 152 HOH HOH . C 3 HOH A 141 670 153 HOH HOH . C 3 HOH A 142 671 154 HOH HOH . C 3 HOH A 143 672 155 HOH HOH . C 3 HOH A 144 673 157 HOH HOH . C 3 HOH A 145 674 158 HOH HOH . C 3 HOH A 146 675 159 HOH HOH . C 3 HOH A 147 676 160 HOH HOH . C 3 HOH A 148 677 161 HOH HOH . C 3 HOH A 149 678 163 HOH HOH . C 3 HOH A 150 679 164 HOH HOH . C 3 HOH A 151 680 165 HOH HOH . C 3 HOH A 152 681 166 HOH HOH . C 3 HOH A 153 682 167 HOH HOH . C 3 HOH A 154 683 168 HOH HOH . C 3 HOH A 155 684 169 HOH HOH . C 3 HOH A 156 685 170 HOH HOH . C 3 HOH A 157 686 171 HOH HOH . C 3 HOH A 158 687 173 HOH HOH . C 3 HOH A 159 688 174 HOH HOH . C 3 HOH A 160 689 175 HOH HOH . C 3 HOH A 161 690 176 HOH HOH . C 3 HOH A 162 691 177 HOH HOH . C 3 HOH A 163 692 180 HOH HOH . C 3 HOH A 164 693 181 HOH HOH . C 3 HOH A 165 694 182 HOH HOH . C 3 HOH A 166 695 183 HOH HOH . C 3 HOH A 167 696 184 HOH HOH . C 3 HOH A 168 697 185 HOH HOH . C 3 HOH A 169 698 186 HOH HOH . C 3 HOH A 170 699 187 HOH HOH . C 3 HOH A 171 700 188 HOH HOH . C 3 HOH A 172 701 189 HOH HOH . C 3 HOH A 173 702 190 HOH HOH . C 3 HOH A 174 703 192 HOH HOH . C 3 HOH A 175 704 193 HOH HOH . C 3 HOH A 176 705 196 HOH HOH . C 3 HOH A 177 706 201 HOH HOH . C 3 HOH A 178 707 202 HOH HOH . C 3 HOH A 179 708 203 HOH HOH . C 3 HOH A 180 709 204 HOH HOH . C 3 HOH A 181 710 205 HOH HOH . C 3 HOH A 182 711 206 HOH HOH . C 3 HOH A 183 712 207 HOH HOH . C 3 HOH A 184 713 209 HOH HOH . C 3 HOH A 185 714 210 HOH HOH . C 3 HOH A 186 715 211 HOH HOH . C 3 HOH A 187 716 212 HOH HOH . C 3 HOH A 188 717 214 HOH HOH . C 3 HOH A 189 718 216 HOH HOH . C 3 HOH A 190 719 217 HOH HOH . C 3 HOH A 191 720 218 HOH HOH . C 3 HOH A 192 721 219 HOH HOH . C 3 HOH A 193 722 220 HOH HOH . C 3 HOH A 194 723 221 HOH HOH . C 3 HOH A 195 724 222 HOH HOH . C 3 HOH A 196 725 223 HOH HOH . C 3 HOH A 197 726 224 HOH HOH . C 3 HOH A 198 727 226 HOH HOH . C 3 HOH A 199 728 228 HOH HOH . C 3 HOH A 200 729 229 HOH HOH . C 3 HOH A 201 730 230 HOH HOH . C 3 HOH A 202 731 232 HOH HOH . C 3 HOH A 203 732 233 HOH HOH . C 3 HOH A 204 733 235 HOH HOH . C 3 HOH A 205 734 242 HOH HOH . C 3 HOH A 206 735 243 HOH HOH . C 3 HOH A 207 736 244 HOH HOH . C 3 HOH A 208 737 245 HOH HOH . C 3 HOH A 209 738 246 HOH HOH . C 3 HOH A 210 739 247 HOH HOH . C 3 HOH A 211 740 248 HOH HOH . C 3 HOH A 212 741 249 HOH HOH . C 3 HOH A 213 742 250 HOH HOH . C 3 HOH A 214 743 251 HOH HOH . C 3 HOH A 215 744 252 HOH HOH . C 3 HOH A 216 745 253 HOH HOH . C 3 HOH A 217 746 254 HOH HOH . C 3 HOH A 218 747 255 HOH HOH . C 3 HOH A 219 748 257 HOH HOH . C 3 HOH A 220 749 258 HOH HOH . C 3 HOH A 221 750 259 HOH HOH . C 3 HOH A 222 751 260 HOH HOH . C 3 HOH A 223 752 261 HOH HOH . C 3 HOH A 224 753 262 HOH HOH . C 3 HOH A 225 754 263 HOH HOH . C 3 HOH A 226 755 264 HOH HOH . C 3 HOH A 227 756 267 HOH HOH . C 3 HOH A 228 757 268 HOH HOH . C 3 HOH A 229 758 270 HOH HOH . C 3 HOH A 230 759 271 HOH HOH . C 3 HOH A 231 760 272 HOH HOH . C 3 HOH A 232 761 273 HOH HOH . C 3 HOH A 233 762 274 HOH HOH . C 3 HOH A 234 763 276 HOH HOH . C 3 HOH A 235 764 278 HOH HOH . C 3 HOH A 236 765 279 HOH HOH . C 3 HOH A 237 766 280 HOH HOH . C 3 HOH A 238 767 281 HOH HOH . C 3 HOH A 239 768 283 HOH HOH . C 3 HOH A 240 769 285 HOH HOH . C 3 HOH A 241 770 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . B 2 28.334 10.631 63.756 1 29.59 ? C1 MLT 1 A 1 HETATM 2 O O1 MLT . . . B 2 28.077 11.378 62.767 1 31.56 ? O1 MLT 1 A 1 HETATM 3 O O2 MLT . . . B 2 28.499 11.085 64.915 1 28.18 ? O2 MLT 1 A 1 HETATM 4 C C2 MLT . . . B 2 28.446 9.154 63.535 1 29.74 ? C2 MLT 1 A 1 HETATM 5 O O3 MLT . . . B 2 27.568 8.739 62.516 1 25.63 ? O3 MLT 1 A 1 HETATM 6 C C3 MLT . . . B 2 29.896 8.779 63.264 1 28.91 ? C3 MLT 1 A 1 HETATM 7 C C4 MLT . . . B 2 29.915 7.291 63.064 1 31.91 ? C4 MLT 1 A 1 HETATM 8 O O4 MLT . . . B 2 29.777 6.497 64.047 1 23.78 ? O4 MLT 1 A 1 HETATM 9 O O5 MLT . . . B 2 30.052 6.918 61.866 1 35.38 ? O5 MLT 1 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #