data_3B7T # _model_server_result.job_id XPz4c30xhfGnTzkqLqUEMw _model_server_result.datetime_utc '2024-11-13 04:27:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 3B7T # _exptl.entry_id 3B7T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.04 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTERBIUM (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B7T _cell.length_a 78.49 _cell.length_b 87.785 _cell.length_c 99.916 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 53 A ASP 47 1_555 D YB YB . A YB 702 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc2 A OD2 ASP 53 A ASP 47 1_555 D YB YB . A YB 702 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc3 A OD2 ASP 181 A ASP 175 1_555 E YB YB . A YB 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc4 A NE2 HIS 301 A HIS 295 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 A NE2 HIS 305 A HIS 299 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc6 A OE1 GLU 324 A GLU 318 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc7 A OE2 GLU 324 A GLU 318 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc8 A OD1 ASP 487 A ASP 481 1_555 D YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc9 A OD2 ASP 487 A ASP 481 1_555 D YB YB . A YB 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc10 C ZN ZN . A ZN 701 1_555 B N ARG 1 B ARG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc11 C ZN ZN . A ZN 701 1_555 B O ARG 1 B ARG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc12 D YB YB . A YB 702 1_555 G O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? # _chem_comp.formula 'Yb 3' _chem_comp.formula_weight 173.04 _chem_comp.id YB _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTERBIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3B7T _atom_sites.fract_transf_matrix[1][1] 0.01274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 701 ZN ZN . D 4 YB A 1 702 702 YB YB . E 4 YB A 1 703 703 YB YB . F 5 IMD A 1 704 704 IMD IMD . G 6 HOH A 1 707 707 HOH HOH . G 6 HOH A 2 708 709 HOH HOH . G 6 HOH A 3 709 712 HOH HOH . G 6 HOH A 4 710 713 HOH HOH . G 6 HOH A 5 711 720 HOH HOH . G 6 HOH A 6 712 721 HOH HOH . G 6 HOH A 7 713 722 HOH HOH . G 6 HOH A 8 714 740 HOH HOH . G 6 HOH A 9 715 741 HOH HOH . G 6 HOH A 10 716 754 HOH HOH . G 6 HOH A 11 717 1 HOH HOH . G 6 HOH A 12 718 2 HOH HOH . G 6 HOH A 13 719 3 HOH HOH . G 6 HOH A 14 720 4 HOH HOH . G 6 HOH A 15 721 5 HOH HOH . G 6 HOH A 16 722 6 HOH HOH . G 6 HOH A 17 723 7 HOH HOH . G 6 HOH A 18 724 8 HOH HOH . G 6 HOH A 19 725 9 HOH HOH . G 6 HOH A 20 726 10 HOH HOH . G 6 HOH A 21 727 11 HOH HOH . G 6 HOH A 22 728 12 HOH HOH . G 6 HOH A 23 729 13 HOH HOH . G 6 HOH A 24 730 14 HOH HOH . G 6 HOH A 25 731 15 HOH HOH . G 6 HOH A 26 732 16 HOH HOH . G 6 HOH A 27 733 17 HOH HOH . G 6 HOH A 28 734 18 HOH HOH . G 6 HOH A 29 735 19 HOH HOH . G 6 HOH A 30 736 20 HOH HOH . G 6 HOH A 31 737 21 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol YB _atom_site.label_atom_id YB _atom_site.label_comp_id YB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 24.721 _atom_site.Cartn_y 49.326 _atom_site.Cartn_z 6.117 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id YB _atom_site.auth_comp_id YB _atom_site.auth_seq_id 702 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #