data_3B88 # _model_server_result.job_id HfTCMQMEb1RIvYk8PTnTrQ _model_server_result.datetime_utc '2025-01-10 21:10:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 3B88 # _exptl.entry_id 3B88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation 'Threonine 57 to Alanine' _entity.pdbx_fragment 'Chain B' _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B88 _cell.length_a 65.118 _cell.length_b 67.284 _cell.length_c 110.523 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 17 1_555 A SG CYS 50 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 46 A CYS 46 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 92 A CYS 92 1_555 A SG CYS 112 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 17 B CYS 17 1_555 B SG CYS 50 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf5 B SG CYS 46 B CYS 46 1_555 B SG CYS 103 B CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 92 B CYS 92 1_555 B SG CYS 112 B CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 3B88 _atom_sites.fract_transf_matrix[1][1] 0.015357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 702 702 ACT ACT . D 3 ETE A 1 224 224 ETE ETE . E 3 ETE B 1 225 225 ETE ETE . F 4 HOH A 1 274 115 HOH HOH . F 4 HOH A 2 703 2 HOH HOH . F 4 HOH A 3 704 3 HOH HOH . F 4 HOH A 4 705 5 HOH HOH . F 4 HOH A 5 706 6 HOH HOH . F 4 HOH A 6 707 7 HOH HOH . F 4 HOH A 7 708 8 HOH HOH . F 4 HOH A 8 709 10 HOH HOH . F 4 HOH A 9 710 11 HOH HOH . F 4 HOH A 10 711 14 HOH HOH . F 4 HOH A 11 712 16 HOH HOH . F 4 HOH A 12 713 19 HOH HOH . F 4 HOH A 13 714 21 HOH HOH . F 4 HOH A 14 715 23 HOH HOH . F 4 HOH A 15 716 24 HOH HOH . F 4 HOH A 16 717 25 HOH HOH . F 4 HOH A 17 718 26 HOH HOH . F 4 HOH A 18 719 28 HOH HOH . F 4 HOH A 19 720 29 HOH HOH . F 4 HOH A 20 721 33 HOH HOH . F 4 HOH A 21 722 34 HOH HOH . F 4 HOH A 22 724 37 HOH HOH . F 4 HOH A 23 725 39 HOH HOH . F 4 HOH A 24 726 44 HOH HOH . F 4 HOH A 25 727 45 HOH HOH . F 4 HOH A 26 728 48 HOH HOH . F 4 HOH A 27 729 50 HOH HOH . F 4 HOH A 28 730 52 HOH HOH . F 4 HOH A 29 731 53 HOH HOH . F 4 HOH A 30 732 55 HOH HOH . F 4 HOH A 31 733 56 HOH HOH . F 4 HOH A 32 734 58 HOH HOH . F 4 HOH A 33 735 59 HOH HOH . F 4 HOH A 34 736 60 HOH HOH . F 4 HOH A 35 737 61 HOH HOH . F 4 HOH A 36 739 71 HOH HOH . F 4 HOH A 37 740 73 HOH HOH . F 4 HOH A 38 741 76 HOH HOH . F 4 HOH A 39 742 77 HOH HOH . F 4 HOH A 40 743 80 HOH HOH . F 4 HOH A 41 744 81 HOH HOH . F 4 HOH A 42 745 82 HOH HOH . F 4 HOH A 43 746 84 HOH HOH . F 4 HOH A 44 747 85 HOH HOH . F 4 HOH A 45 748 88 HOH HOH . F 4 HOH A 46 749 90 HOH HOH . F 4 HOH A 47 750 93 HOH HOH . F 4 HOH A 48 751 96 HOH HOH . F 4 HOH A 49 752 98 HOH HOH . F 4 HOH A 50 753 99 HOH HOH . F 4 HOH A 51 754 102 HOH HOH . F 4 HOH A 52 755 103 HOH HOH . F 4 HOH A 53 756 106 HOH HOH . F 4 HOH A 54 757 110 HOH HOH . F 4 HOH A 55 758 111 HOH HOH . F 4 HOH A 56 759 112 HOH HOH . F 4 HOH A 57 760 113 HOH HOH . F 4 HOH A 58 761 114 HOH HOH . F 4 HOH A 59 762 122 HOH HOH . F 4 HOH A 60 763 124 HOH HOH . F 4 HOH A 61 764 129 HOH HOH . F 4 HOH A 62 766 131 HOH HOH . F 4 HOH A 63 767 133 HOH HOH . F 4 HOH A 64 768 136 HOH HOH . F 4 HOH A 65 769 148 HOH HOH . F 4 HOH A 66 770 150 HOH HOH . F 4 HOH A 67 771 152 HOH HOH . F 4 HOH A 68 772 154 HOH HOH . F 4 HOH A 69 773 159 HOH HOH . F 4 HOH A 70 774 162 HOH HOH . F 4 HOH A 71 775 169 HOH HOH . F 4 HOH A 72 776 178 HOH HOH . F 4 HOH A 73 777 179 HOH HOH . G 4 HOH B 1 226 4 HOH HOH . G 4 HOH B 2 227 9 HOH HOH . G 4 HOH B 3 228 12 HOH HOH . G 4 HOH B 4 229 13 HOH HOH . G 4 HOH B 5 230 15 HOH HOH . G 4 HOH B 6 231 17 HOH HOH . G 4 HOH B 7 232 18 HOH HOH . G 4 HOH B 8 233 20 HOH HOH . G 4 HOH B 9 234 22 HOH HOH . G 4 HOH B 10 235 27 HOH HOH . G 4 HOH B 11 236 30 HOH HOH . G 4 HOH B 12 237 31 HOH HOH . G 4 HOH B 13 238 32 HOH HOH . G 4 HOH B 14 239 36 HOH HOH . G 4 HOH B 15 240 38 HOH HOH . G 4 HOH B 16 241 40 HOH HOH . G 4 HOH B 17 242 41 HOH HOH . G 4 HOH B 18 243 42 HOH HOH . G 4 HOH B 19 244 43 HOH HOH . G 4 HOH B 20 245 46 HOH HOH . G 4 HOH B 21 246 47 HOH HOH . G 4 HOH B 22 247 49 HOH HOH . G 4 HOH B 23 248 51 HOH HOH . G 4 HOH B 24 249 54 HOH HOH . G 4 HOH B 25 250 62 HOH HOH . G 4 HOH B 26 251 63 HOH HOH . G 4 HOH B 27 252 64 HOH HOH . G 4 HOH B 28 253 66 HOH HOH . G 4 HOH B 29 254 67 HOH HOH . G 4 HOH B 30 255 68 HOH HOH . G 4 HOH B 31 256 69 HOH HOH . G 4 HOH B 32 257 72 HOH HOH . G 4 HOH B 33 258 74 HOH HOH . G 4 HOH B 34 259 75 HOH HOH . G 4 HOH B 35 260 78 HOH HOH . G 4 HOH B 36 261 79 HOH HOH . G 4 HOH B 37 262 83 HOH HOH . G 4 HOH B 38 263 86 HOH HOH . G 4 HOH B 39 264 87 HOH HOH . G 4 HOH B 40 265 89 HOH HOH . G 4 HOH B 41 266 92 HOH HOH . G 4 HOH B 42 267 94 HOH HOH . G 4 HOH B 43 268 97 HOH HOH . G 4 HOH B 44 269 101 HOH HOH . G 4 HOH B 45 270 104 HOH HOH . G 4 HOH B 46 271 105 HOH HOH . G 4 HOH B 47 272 107 HOH HOH . G 4 HOH B 48 273 108 HOH HOH . G 4 HOH B 49 275 117 HOH HOH . G 4 HOH B 50 276 118 HOH HOH . G 4 HOH B 51 277 119 HOH HOH . G 4 HOH B 52 278 120 HOH HOH . G 4 HOH B 53 279 121 HOH HOH . G 4 HOH B 54 280 123 HOH HOH . G 4 HOH B 55 281 126 HOH HOH . G 4 HOH B 56 282 127 HOH HOH . G 4 HOH B 57 283 128 HOH HOH . G 4 HOH B 58 284 132 HOH HOH . G 4 HOH B 59 285 134 HOH HOH . G 4 HOH B 60 286 135 HOH HOH . G 4 HOH B 61 287 139 HOH HOH . G 4 HOH B 62 288 140 HOH HOH . G 4 HOH B 63 289 141 HOH HOH . G 4 HOH B 64 290 144 HOH HOH . G 4 HOH B 65 291 145 HOH HOH . G 4 HOH B 66 292 146 HOH HOH . G 4 HOH B 67 293 153 HOH HOH . G 4 HOH B 68 294 158 HOH HOH . G 4 HOH B 69 295 160 HOH HOH . G 4 HOH B 70 296 164 HOH HOH . G 4 HOH B 71 297 165 HOH HOH . G 4 HOH B 72 298 170 HOH HOH . G 4 HOH B 73 723 35 HOH HOH . G 4 HOH B 74 738 65 HOH HOH . G 4 HOH B 75 765 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . C 2 -9.706 -15.255 27.847 1 29.8 ? C ACT 702 A 1 HETATM 2 O O ACT . . . C 2 -9.913 -14.574 26.822 1 29.7 ? O ACT 702 A 1 HETATM 3 O OXT ACT . . . C 2 -8.774 -14.869 28.583 1 27.92 ? OXT ACT 702 A 1 HETATM 4 C CH3 ACT . . . C 2 -10.538 -16.469 28.161 1 30.58 ? CH3 ACT 702 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 1042 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #