data_3B8E # _model_server_result.job_id vjgPeby7hsBCH3KMNTCBdA _model_server_result.datetime_utc '2024-11-25 08:50:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1}' # _entry.id 3B8E # _exptl.entry_id 3B8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 790.145 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B8E _cell.length_a 68.93 _cell.length_b 261.5 _cell.length_c 334.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L 1 1 D,E,F,M,N,O,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 351 A ASP 369 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc2 A O THR 353 A THR 371 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A OD1 ASP 692 A ASP 710 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc4 A OD2 ASP 692 A ASP 710 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 D OD1 ASP 351 C ASP 369 1_555 M MG MG . C MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc6 D O THR 353 C THR 371 1_555 M MG MG . C MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc7 D OD1 ASP 692 C ASP 710 1_555 M MG MG . C MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc8 D OD2 ASP 692 C ASP 710 1_555 M MG MG . C MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 239 n n P O14 PC1 doub 240 n n P O13 PC1 sing 241 n n P O11 PC1 sing 242 n n O13 C11 PC1 sing 243 n n C11 C12 PC1 sing 244 n n C11 H111 PC1 sing 245 n n C11 H112 PC1 sing 246 n n C12 N PC1 sing 247 n n C12 H121 PC1 sing 248 n n C12 H122 PC1 sing 249 n n N C13 PC1 sing 250 n n N C14 PC1 sing 251 n n N C15 PC1 sing 252 n n C13 H131 PC1 sing 253 n n C13 H132 PC1 sing 254 n n C13 H133 PC1 sing 255 n n C14 H141 PC1 sing 256 n n C14 H142 PC1 sing 257 n n C14 H143 PC1 sing 258 n n C15 H151 PC1 sing 259 n n C15 H152 PC1 sing 260 n n C15 H153 PC1 sing 261 n n O11 C1 PC1 sing 262 n n C1 C2 PC1 sing 263 n n C1 H11 PC1 sing 264 n n C1 H12 PC1 sing 265 n n C2 O21 PC1 sing 266 n n C2 C3 PC1 sing 267 n n C2 H2 PC1 sing 268 n n O21 C21 PC1 sing 269 n n C21 O22 PC1 doub 270 n n C21 C22 PC1 sing 271 n n C22 C23 PC1 sing 272 n n C22 H221 PC1 sing 273 n n C22 H222 PC1 sing 274 n n C23 C24 PC1 sing 275 n n C23 H231 PC1 sing 276 n n C23 H232 PC1 sing 277 n n C24 C25 PC1 sing 278 n n C24 H241 PC1 sing 279 n n C24 H242 PC1 sing 280 n n C25 C26 PC1 sing 281 n n C25 H251 PC1 sing 282 n n C25 H252 PC1 sing 283 n n C26 C27 PC1 sing 284 n n C26 H261 PC1 sing 285 n n C26 H262 PC1 sing 286 n n C27 C28 PC1 sing 287 n n C27 H271 PC1 sing 288 n n C27 H272 PC1 sing 289 n n C28 C29 PC1 sing 290 n n C28 H281 PC1 sing 291 n n C28 H282 PC1 sing 292 n n C29 C2A PC1 sing 293 n n C29 H291 PC1 sing 294 n n C29 H292 PC1 sing 295 n n C2A C2B PC1 sing 296 n n C2A H2A1 PC1 sing 297 n n C2A H2A2 PC1 sing 298 n n C2B C2C PC1 sing 299 n n C2B H2B1 PC1 sing 300 n n C2B H2B2 PC1 sing 301 n n C2C C2D PC1 sing 302 n n C2C H2C1 PC1 sing 303 n n C2C H2C2 PC1 sing 304 n n C2D C2E PC1 sing 305 n n C2D H2D1 PC1 sing 306 n n C2D H2D2 PC1 sing 307 n n C2E C2F PC1 sing 308 n n C2E H2E1 PC1 sing 309 n n C2E H2E2 PC1 sing 310 n n C2F C2G PC1 sing 311 n n C2F H2F1 PC1 sing 312 n n C2F H2F2 PC1 sing 313 n n C2G C2H PC1 sing 314 n n C2G H2G1 PC1 sing 315 n n C2G H2G2 PC1 sing 316 n n C2H C2I PC1 sing 317 n n C2H H2H1 PC1 sing 318 n n C2H H2H2 PC1 sing 319 n n C2I H2I1 PC1 sing 320 n n C2I H2I2 PC1 sing 321 n n C2I H2I3 PC1 sing 322 n n C3 O31 PC1 sing 323 n n C3 H31 PC1 sing 324 n n C3 H32 PC1 sing 325 n n O31 C31 PC1 sing 326 n n C31 O32 PC1 doub 327 n n C31 C32 PC1 sing 328 n n C32 C33 PC1 sing 329 n n C32 H321 PC1 sing 330 n n C32 H322 PC1 sing 331 n n C33 C34 PC1 sing 332 n n C33 H331 PC1 sing 333 n n C33 H332 PC1 sing 334 n n C34 C35 PC1 sing 335 n n C34 H341 PC1 sing 336 n n C34 H342 PC1 sing 337 n n C35 C36 PC1 sing 338 n n C35 H351 PC1 sing 339 n n C35 H352 PC1 sing 340 n n C36 C37 PC1 sing 341 n n C36 H361 PC1 sing 342 n n C36 H362 PC1 sing 343 n n C37 C38 PC1 sing 344 n n C37 H371 PC1 sing 345 n n C37 H372 PC1 sing 346 n n C38 C39 PC1 sing 347 n n C38 H381 PC1 sing 348 n n C38 H382 PC1 sing 349 n n C39 C3A PC1 sing 350 n n C39 H391 PC1 sing 351 n n C39 H392 PC1 sing 352 n n C3A C3B PC1 sing 353 n n C3A H3A1 PC1 sing 354 n n C3A H3A2 PC1 sing 355 n n C3B C3C PC1 sing 356 n n C3B H3B1 PC1 sing 357 n n C3B H3B2 PC1 sing 358 n n C3C C3D PC1 sing 359 n n C3C H3C1 PC1 sing 360 n n C3C H3C2 PC1 sing 361 n n C3D C3E PC1 sing 362 n n C3D H3D1 PC1 sing 363 n n C3D H3D2 PC1 sing 364 n n C3E C3F PC1 sing 365 n n C3E H3E1 PC1 sing 366 n n C3E H3E2 PC1 sing 367 n n C3F C3G PC1 sing 368 n n C3F H3F1 PC1 sing 369 n n C3F H3F2 PC1 sing 370 n n C3G C3H PC1 sing 371 n n C3G H3G1 PC1 sing 372 n n C3G H3G2 PC1 sing 373 n n C3H C3I PC1 sing 374 n n C3H H3H1 PC1 sing 375 n n C3H H3H2 PC1 sing 376 n n C3I H3I1 PC1 sing 377 n n C3I H3I2 PC1 sing 378 n n C3I H3I3 PC1 sing 379 n n # _atom_sites.entry_id 3B8E _atom_sites.fract_transf_matrix[1][1] 0.014507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MG A 1 2002 2002 MG MG . H 5 RB A 1 2003 2003 RB RB . I 5 RB A 1 2004 2004 RB RB . J 5 RB A 1 2005 2005 RB RB . K 6 MF4 A 1 2001 2001 MF4 MF4 . L 7 PC1 B 1 1 1 PC1 PC2 . M 4 MG C 1 2002 2002 MG MG . N 5 RB C 1 2003 2003 RB RB . O 5 RB C 1 2004 2004 RB RB . P 5 RB C 1 2005 2005 RB RB . Q 6 MF4 C 1 2001 2001 MF4 MF4 . R 7 PC1 C 1 1 1 PC1 PC2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . L 7 -15.002 6.393 74.757 1 120.9 ? O12 PC1 1 B 1 HETATM 2 P P PC1 . . . L 7 -13.687 6.18 74.119 1 120.9 ? P PC1 1 B 1 HETATM 3 O O14 PC1 . . . L 7 -13.305 4.803 73.735 1 120.9 ? O14 PC1 1 B 1 HETATM 4 O O13 PC1 . . . L 7 -13.576 7.13 72.818 1 120.9 ? O13 PC1 1 B 1 HETATM 5 C C11 PC1 . . . L 7 -13.595 6.548 71.513 1 120.9 ? C11 PC1 1 B 1 HETATM 6 C C12 PC1 . . . L 7 -13.755 7.647 70.461 1 120.9 ? C12 PC1 1 B 1 HETATM 7 N N PC1 . . . L 7 -13.822 7.039 69.119 1 120.9 ? N PC1 1 B 1 HETATM 8 C C13 PC1 . . . L 7 -12.539 6.405 68.804 1 120.9 ? C13 PC1 1 B 1 HETATM 9 C C14 PC1 . . . L 7 -14.889 6.027 69.096 1 120.9 ? C14 PC1 1 B 1 HETATM 10 C C15 PC1 . . . L 7 -14.114 8.073 68.118 1 120.9 ? C15 PC1 1 B 1 HETATM 11 O O11 PC1 . . . L 7 -12.554 6.739 75.121 1 120.9 ? O11 PC1 1 B 1 HETATM 12 C C1 PC1 . . . L 7 -12.772 6.718 76.534 1 105.57 ? C1 PC1 1 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 12 #