data_3B8G # _model_server_result.job_id 5PWLKgM8cP1_O7RIgyG4oQ _model_server_result.datetime_utc '2024-11-29 13:50:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3B8G # _exptl.entry_id 3B8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3B8G _cell.length_a 98.65 _cell.length_b 98.65 _cell.length_c 89.754 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 149 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_666 -y+1,-x+1,-z+1 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 49.325 85.433406 89.754 3 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 98.65 0 0 4 'crystal symmetry operation' 6_556 x,x-y,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 89.754 5 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 49.325 85.433406 0 6 'crystal symmetry operation' 5_656 -x+y+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 98.65 0 89.754 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 3B8G _atom_sites.fract_transf_matrix[1][1] 0.010137 _atom_sites.fract_transf_matrix[1][2] 0.005853 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 1 1 COA COA . C 3 NLG A 1 437 1 NLG NLG . D 4 HOH A 1 438 1 HOH TIP . D 4 HOH A 2 439 2 HOH TIP . D 4 HOH A 3 440 3 HOH TIP . D 4 HOH A 4 441 4 HOH TIP . D 4 HOH A 5 442 5 HOH TIP . D 4 HOH A 6 443 6 HOH TIP . D 4 HOH A 7 444 7 HOH TIP . D 4 HOH A 8 445 8 HOH TIP . D 4 HOH A 9 446 9 HOH TIP . D 4 HOH A 10 447 10 HOH TIP . D 4 HOH A 11 448 11 HOH TIP . D 4 HOH A 12 449 12 HOH TIP . D 4 HOH A 13 450 13 HOH TIP . D 4 HOH A 14 451 14 HOH TIP . D 4 HOH A 15 452 15 HOH TIP . D 4 HOH A 16 453 16 HOH TIP . D 4 HOH A 17 454 17 HOH TIP . D 4 HOH A 18 455 18 HOH TIP . D 4 HOH A 19 456 19 HOH TIP . D 4 HOH A 20 457 20 HOH TIP . D 4 HOH A 21 458 21 HOH TIP . D 4 HOH A 22 459 22 HOH TIP . D 4 HOH A 23 460 23 HOH TIP . D 4 HOH A 24 461 24 HOH TIP . D 4 HOH A 25 462 25 HOH TIP . D 4 HOH A 26 463 26 HOH TIP . D 4 HOH A 27 464 27 HOH TIP . D 4 HOH A 28 465 28 HOH TIP . D 4 HOH A 29 466 29 HOH TIP . D 4 HOH A 30 467 30 HOH TIP . D 4 HOH A 31 468 31 HOH TIP . D 4 HOH A 32 469 32 HOH TIP . D 4 HOH A 33 470 33 HOH TIP . D 4 HOH A 34 471 34 HOH TIP . D 4 HOH A 35 472 35 HOH TIP . D 4 HOH A 36 473 36 HOH TIP . D 4 HOH A 37 474 37 HOH TIP . D 4 HOH A 38 475 38 HOH TIP . D 4 HOH A 39 476 39 HOH TIP . D 4 HOH A 40 477 40 HOH TIP . D 4 HOH A 41 478 41 HOH TIP . D 4 HOH A 42 479 42 HOH TIP . D 4 HOH A 43 480 43 HOH TIP . D 4 HOH A 44 481 44 HOH TIP . D 4 HOH A 45 482 45 HOH TIP . D 4 HOH A 46 483 46 HOH TIP . D 4 HOH A 47 484 47 HOH TIP . D 4 HOH A 48 485 48 HOH TIP . D 4 HOH A 49 486 49 HOH TIP . D 4 HOH A 50 487 50 HOH TIP . D 4 HOH A 51 488 51 HOH TIP . D 4 HOH A 52 489 52 HOH TIP . D 4 HOH A 53 490 53 HOH TIP . D 4 HOH A 54 491 54 HOH TIP . D 4 HOH A 55 492 55 HOH TIP . D 4 HOH A 56 493 56 HOH TIP . D 4 HOH A 57 494 57 HOH TIP . D 4 HOH A 58 495 58 HOH TIP . D 4 HOH A 59 496 59 HOH TIP . D 4 HOH A 60 497 60 HOH TIP . D 4 HOH A 61 498 61 HOH TIP . D 4 HOH A 62 499 62 HOH TIP . D 4 HOH A 63 500 63 HOH TIP . D 4 HOH A 64 501 64 HOH TIP . D 4 HOH A 65 502 65 HOH TIP . D 4 HOH A 66 503 66 HOH TIP . D 4 HOH A 67 504 67 HOH TIP . D 4 HOH A 68 505 68 HOH TIP . D 4 HOH A 69 506 69 HOH TIP . D 4 HOH A 70 507 70 HOH TIP . D 4 HOH A 71 508 71 HOH TIP . D 4 HOH A 72 509 72 HOH TIP . D 4 HOH A 73 510 73 HOH TIP . D 4 HOH A 74 511 74 HOH TIP . D 4 HOH A 75 512 75 HOH TIP . D 4 HOH A 76 513 76 HOH TIP . D 4 HOH A 77 514 77 HOH TIP . D 4 HOH A 78 515 78 HOH TIP . D 4 HOH A 79 516 79 HOH TIP . D 4 HOH A 80 517 80 HOH TIP . D 4 HOH A 81 518 81 HOH TIP . D 4 HOH A 82 519 82 HOH TIP . D 4 HOH A 83 520 83 HOH TIP . D 4 HOH A 84 521 84 HOH TIP . D 4 HOH A 85 522 85 HOH TIP . D 4 HOH A 86 523 86 HOH TIP . D 4 HOH A 87 524 87 HOH TIP . D 4 HOH A 88 525 88 HOH TIP . D 4 HOH A 89 526 89 HOH TIP . D 4 HOH A 90 527 90 HOH TIP . D 4 HOH A 91 528 91 HOH TIP . D 4 HOH A 92 529 92 HOH TIP . D 4 HOH A 93 530 93 HOH TIP . D 4 HOH A 94 531 94 HOH TIP . D 4 HOH A 95 532 95 HOH TIP . D 4 HOH A 96 533 96 HOH TIP . D 4 HOH A 97 534 97 HOH TIP . D 4 HOH A 98 535 98 HOH TIP . D 4 HOH A 99 536 99 HOH TIP . D 4 HOH A 100 537 100 HOH TIP . D 4 HOH A 101 538 101 HOH TIP . D 4 HOH A 102 539 102 HOH TIP . D 4 HOH A 103 540 103 HOH TIP . D 4 HOH A 104 541 104 HOH TIP . D 4 HOH A 105 542 105 HOH TIP . D 4 HOH A 106 543 106 HOH TIP . D 4 HOH A 107 544 107 HOH TIP . D 4 HOH A 108 545 108 HOH TIP . D 4 HOH A 109 546 109 HOH TIP . D 4 HOH A 110 547 110 HOH TIP . D 4 HOH A 111 548 111 HOH TIP . D 4 HOH A 112 549 112 HOH TIP . D 4 HOH A 113 550 113 HOH TIP . D 4 HOH A 114 551 114 HOH TIP . D 4 HOH A 115 552 115 HOH TIP . D 4 HOH A 116 553 116 HOH TIP . D 4 HOH A 117 554 117 HOH TIP . D 4 HOH A 118 555 118 HOH TIP . D 4 HOH A 119 556 119 HOH TIP . D 4 HOH A 120 557 120 HOH TIP . D 4 HOH A 121 558 121 HOH TIP . D 4 HOH A 122 559 122 HOH TIP . D 4 HOH A 123 560 123 HOH TIP . D 4 HOH A 124 561 124 HOH TIP . D 4 HOH A 125 562 125 HOH TIP . D 4 HOH A 126 563 126 HOH TIP . D 4 HOH A 127 564 127 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 40.042 -0.164 20.639 1 40.85 ? N1A COA 1 A 1 HETATM 2 C C2A COA . . . B 2 39.265 0.496 21.488 1 48.06 ? C2A COA 1 A 1 HETATM 3 N N3A COA . . . B 2 38.982 1.797 21.388 1 51.51 ? N3A COA 1 A 1 HETATM 4 C C4A COA . . . B 2 39.595 2.451 20.394 1 45.05 ? C4A COA 1 A 1 HETATM 5 C C5A COA . . . B 2 40.476 1.825 19.527 1 40.31 ? C5A COA 1 A 1 HETATM 6 C C6A COA . . . B 2 40.612 0.459 19.596 1 46.7 ? C6A COA 1 A 1 HETATM 7 N N6A COA . . . B 2 41.417 -0.104 18.693 1 49.3 ? N6A COA 1 A 1 HETATM 8 N N7A COA . . . B 2 40.937 2.693 18.645 1 43.97 ? N7A COA 1 A 1 HETATM 9 C C8A COA . . . B 2 40.319 3.853 18.934 1 49.94 ? C8A COA 1 A 1 HETATM 10 N N9A COA . . . B 2 39.498 3.701 19.984 1 54.31 ? N9A COA 1 A 1 HETATM 11 C C1B COA . . . B 2 38.763 4.717 20.753 1 53.81 ? C1B COA 1 A 1 HETATM 12 C C2B COA . . . B 2 39.873 5.768 20.842 1 59.97 ? C2B COA 1 A 1 HETATM 13 O O2B COA . . . B 2 40.754 5.365 21.909 1 57.15 ? O2B COA 1 A 1 HETATM 14 C C3B COA . . . B 2 39.015 6.919 21.325 1 57.08 ? C3B COA 1 A 1 HETATM 15 O O3B COA . . . B 2 38.777 6.603 22.72 1 60.51 ? O3B COA 1 A 1 HETATM 16 P P3B COA . . . B 2 37.985 7.722 23.611 1 66.09 ? P3B COA 1 A 1 HETATM 17 O O7A COA . . . B 2 36.381 7.628 23.214 1 56.16 ? O7A COA 1 A 1 HETATM 18 O O8A COA . . . B 2 37.954 7.333 25.202 1 50.78 ? O8A COA 1 A 1 HETATM 19 O O9A COA . . . B 2 38.718 8.963 23.222 1 52.69 ? O9A COA 1 A 1 HETATM 20 C C4B COA . . . B 2 37.734 6.745 20.465 1 49.57 ? C4B COA 1 A 1 HETATM 21 O O4B COA . . . B 2 37.635 5.359 20.1 1 52.52 ? O4B COA 1 A 1 HETATM 22 C C5B COA . . . B 2 37.573 7.449 19.119 1 43.66 ? C5B COA 1 A 1 HETATM 23 O O5B COA . . . B 2 36.229 7.258 18.681 1 36.53 ? O5B COA 1 A 1 HETATM 24 P P1A COA . . . B 2 35.806 8.187 17.438 1 47.88 ? P1A COA 1 A 1 HETATM 25 O O1A COA . . . B 2 34.31 8.272 17.318 1 46.75 ? O1A COA 1 A 1 HETATM 26 O O2A COA . . . B 2 36.624 9.422 17.535 1 54.52 ? O2A COA 1 A 1 HETATM 27 O O3A COA . . . B 2 36.381 7.311 16.203 1 42.19 ? O3A COA 1 A 1 HETATM 28 P P2A COA . . . B 2 37.632 7.695 15.293 1 39.95 ? P2A COA 1 A 1 HETATM 29 O O4A COA . . . B 2 38.864 7.94 16.086 1 31.67 ? O4A COA 1 A 1 HETATM 30 O O5A COA . . . B 2 37.197 8.721 14.309 1 29.89 ? O5A COA 1 A 1 HETATM 31 O O6A COA . . . B 2 37.82 6.234 14.545 1 45.96 ? O6A COA 1 A 1 HETATM 32 C CBP COA . . . B 2 38.53 3.878 14.552 1 39.88 ? CBP COA 1 A 1 HETATM 33 C CCP COA . . . B 2 37.694 4.97 15.223 1 48.03 ? CCP COA 1 A 1 HETATM 34 C CDP COA . . . B 2 38.066 3.723 13.112 1 35.07 ? CDP COA 1 A 1 HETATM 35 C CEP COA . . . B 2 38.312 2.653 15.406 1 35.73 ? CEP COA 1 A 1 HETATM 36 C CAP COA . . . B 2 40.031 4.14 14.599 1 44.38 ? CAP COA 1 A 1 HETATM 37 O OAP COA . . . B 2 40.188 5.531 14.466 1 52.08 ? OAP COA 1 A 1 HETATM 38 C C9P COA . . . B 2 40.794 3.484 13.437 1 52.18 ? C9P COA 1 A 1 HETATM 39 O O9P COA . . . B 2 40.688 3.815 12.239 1 48.83 ? O9P COA 1 A 1 HETATM 40 N N8P COA . . . B 2 41.612 2.536 13.883 1 44.43 ? N8P COA 1 A 1 HETATM 41 C C7P COA . . . B 2 42.335 1.728 12.883 1 49.16 ? C7P COA 1 A 1 HETATM 42 C C6P COA . . . B 2 41.399 1.249 11.751 1 31.51 ? C6P COA 1 A 1 HETATM 43 C C5P COA . . . B 2 40.458 0.147 12.284 1 39.04 ? C5P COA 1 A 1 HETATM 44 O O5P COA . . . B 2 40.626 -0.487 13.344 1 33.77 ? O5P COA 1 A 1 HETATM 45 N N4P COA . . . B 2 39.377 0.072 11.514 1 43.59 ? N4P COA 1 A 1 HETATM 46 C C3P COA . . . B 2 38.399 -0.815 11.671 1 48.36 ? C3P COA 1 A 1 HETATM 47 C C2P COA . . . B 2 38.397 -1.65 12.777 1 54.05 ? C2P COA 1 A 1 HETATM 48 S S1P COA . . . B 2 37.82 -3.313 12.281 1 53.98 ? S1P COA 1 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #