data_3B8Q # _model_server_result.job_id 6oQM7pgeeYXFCub43-JGGA _model_server_result.datetime_utc '2024-12-03 17:53:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 3B8Q # _exptl.entry_id 3B8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.93 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-chlorophenyl)-6-[(6,7-dimethoxyquinolin-4-yl)oxy]naphthalene-1-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.137 _cell.angle_gamma 90 _cell.entry_id 3B8Q _cell.length_a 55.116 _cell.length_b 67.782 _cell.length_c 88.089 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C28 H21 Cl N2 O4' _chem_comp.formula_weight 484.93 _chem_comp.id 900 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-chlorophenyl)-6-[(6,7-dimethoxyquinolin-4-yl)oxy]naphthalene-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C49 900 doub 1 n y C48 C47 900 sing 2 n y C49 C44 900 sing 3 n y CL54 C47 900 sing 4 n n C22 N21 900 doub 5 n y C22 C23 900 sing 6 n y C47 C46 900 doub 7 n y N21 C20 900 sing 8 n y C44 N43 900 sing 9 n n C44 C45 900 doub 10 n y C12 C11 900 doub 11 n y C12 C13 900 sing 12 n y N43 C42 900 sing 13 n n O55 C42 900 doub 14 n n C23 C18 900 doub 15 n y C42 C13 900 sing 16 n n C11 C10 900 sing 17 n y C46 C45 900 sing 18 n y C13 C4 900 doub 19 n y C10 C3 900 doub 20 n y C20 C29 900 doub 21 n y C20 C19 900 sing 22 n y C4 C3 900 sing 23 n y C4 C5 900 sing 24 n y C3 C2 900 sing 25 n y C29 C28 900 sing 26 n y C5 C6 900 doub 27 n y C18 C19 900 sing 28 n y C18 O17 900 sing 29 n n C2 C1 900 doub 30 n y C19 C26 900 doub 31 n y C6 C1 900 sing 32 n y C1 O17 900 sing 33 n n C28 O37 900 sing 34 n n C28 C27 900 doub 35 n y C26 C27 900 sing 36 n y O37 C38 900 sing 37 n n C27 O32 900 sing 38 n n O32 C33 900 sing 39 n n C2 H2 900 sing 40 n n C5 H5 900 sing 41 n n C6 H6 900 sing 42 n n C10 H10 900 sing 43 n n C11 H11 900 sing 44 n n C12 H12 900 sing 45 n n C22 H22 900 sing 46 n n C23 H23 900 sing 47 n n C26 H26 900 sing 48 n n C29 H29 900 sing 49 n n C33 H331 900 sing 50 n n C33 H332 900 sing 51 n n C33 H333 900 sing 52 n n C38 H381 900 sing 53 n n C38 H382 900 sing 54 n n C38 H383 900 sing 55 n n N43 H43 900 sing 56 n n C45 H45 900 sing 57 n n C46 H46 900 sing 58 n n C48 H48 900 sing 59 n n C49 H49 900 sing 60 n n # _atom_sites.entry_id 3B8Q _atom_sites.fract_transf_matrix[1][1] 0.018144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000677 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 900 A 1 501 501 900 900 . D 2 900 B 1 502 502 900 900 . E 3 HOH A 1 1179 1 HOH WAT . E 3 HOH A 2 1180 2 HOH WAT . E 3 HOH A 3 1181 4 HOH WAT . E 3 HOH A 4 1182 5 HOH WAT . E 3 HOH A 5 1183 6 HOH WAT . E 3 HOH A 6 1184 9 HOH WAT . E 3 HOH A 7 1185 10 HOH WAT . E 3 HOH A 8 1186 11 HOH WAT . E 3 HOH A 9 1187 12 HOH WAT . E 3 HOH A 10 1188 13 HOH WAT . E 3 HOH A 11 1189 14 HOH WAT . E 3 HOH A 12 1190 15 HOH WAT . E 3 HOH A 13 1191 17 HOH WAT . E 3 HOH A 14 1192 19 HOH WAT . E 3 HOH A 15 1193 20 HOH WAT . E 3 HOH A 16 1194 21 HOH WAT . E 3 HOH A 17 1195 23 HOH WAT . E 3 HOH A 18 1196 24 HOH WAT . E 3 HOH A 19 1197 25 HOH WAT . E 3 HOH A 20 1198 26 HOH WAT . E 3 HOH A 21 1199 27 HOH WAT . E 3 HOH A 22 1200 31 HOH WAT . E 3 HOH A 23 1201 33 HOH WAT . E 3 HOH A 24 1202 34 HOH WAT . E 3 HOH A 25 1203 35 HOH WAT . E 3 HOH A 26 1204 41 HOH WAT . E 3 HOH A 27 1205 43 HOH WAT . E 3 HOH A 28 1206 44 HOH WAT . E 3 HOH A 29 1207 47 HOH WAT . E 3 HOH A 30 1208 48 HOH WAT . E 3 HOH A 31 1209 49 HOH WAT . E 3 HOH A 32 1210 51 HOH WAT . E 3 HOH A 33 1211 52 HOH WAT . E 3 HOH A 34 1212 53 HOH WAT . E 3 HOH A 35 1213 55 HOH WAT . E 3 HOH A 36 1214 103 HOH WAT . E 3 HOH A 37 1215 104 HOH WAT . E 3 HOH A 38 1216 109 HOH WAT . E 3 HOH A 39 1217 112 HOH WAT . E 3 HOH A 40 1218 115 HOH WAT . E 3 HOH A 41 1219 117 HOH WAT . E 3 HOH A 42 1220 124 HOH WAT . E 3 HOH A 43 1221 126 HOH WAT . E 3 HOH A 44 1222 137 HOH WAT . E 3 HOH A 45 1223 138 HOH WAT . E 3 HOH A 46 1224 156 HOH WAT . E 3 HOH A 47 1225 162 HOH WAT . E 3 HOH A 48 1226 164 HOH WAT . E 3 HOH A 49 1227 165 HOH WAT . F 3 HOH B 1 1179 3 HOH WAT . F 3 HOH B 2 1180 8 HOH WAT . F 3 HOH B 3 1181 18 HOH WAT . F 3 HOH B 4 1182 28 HOH WAT . F 3 HOH B 5 1183 32 HOH WAT . F 3 HOH B 6 1184 36 HOH WAT . F 3 HOH B 7 1185 37 HOH WAT . F 3 HOH B 8 1186 54 HOH WAT . F 3 HOH B 9 1187 116 HOH WAT . F 3 HOH B 10 1188 122 HOH WAT . F 3 HOH B 11 1189 125 HOH WAT . F 3 HOH B 12 1190 139 HOH WAT . F 3 HOH B 13 1191 143 HOH WAT . F 3 HOH B 14 1192 144 HOH WAT . F 3 HOH B 15 1193 166 HOH WAT . F 3 HOH B 16 1194 167 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 900 . . . D 2 26.092 2.385 23.519 1 28.09 ? C1 900 502 B 1 HETATM 2 C C2 900 . . . D 2 24.707 2.681 23.401 1 25.6 ? C2 900 502 B 1 HETATM 3 C C3 900 . . . D 2 23.904 2.851 24.578 1 28.3 ? C3 900 502 B 1 HETATM 4 C C4 900 . . . D 2 24.5 2.724 25.909 1 30.51 ? C4 900 502 B 1 HETATM 5 C C5 900 . . . D 2 25.915 2.42 25.977 1 30.22 ? C5 900 502 B 1 HETATM 6 C C6 900 . . . D 2 26.683 2.253 24.8 1 30.01 ? C6 900 502 B 1 HETATM 7 C C10 900 . . . D 2 22.514 3.15 24.437 1 27.99 ? C10 900 502 B 1 HETATM 8 C C11 900 . . . D 2 21.707 3.329 25.591 1 27.52 ? C11 900 502 B 1 HETATM 9 C C12 900 . . . D 2 22.265 3.221 26.903 1 29.19 ? C12 900 502 B 1 HETATM 10 C C13 900 . . . D 2 23.652 2.924 27.108 1 29.71 ? C13 900 502 B 1 HETATM 11 O O17 900 . . . D 2 26.827 2.239 22.358 1 28.39 ? O17 900 502 B 1 HETATM 12 C C18 900 . . . D 2 27.535 3.38 21.994 1 29.75 ? C18 900 502 B 1 HETATM 13 C C19 900 . . . D 2 28.564 3.251 21.031 1 31.05 ? C19 900 502 B 1 HETATM 14 C C20 900 . . . D 2 29.309 4.37 20.596 1 31.09 ? C20 900 502 B 1 HETATM 15 N N21 900 . . . D 2 29.05 5.593 21.191 1 30.47 ? N21 900 502 B 1 HETATM 16 C C22 900 . . . D 2 28.075 5.724 22.122 1 28.93 ? C22 900 502 B 1 HETATM 17 C C23 900 . . . D 2 27.307 4.641 22.56 1 29.51 ? C23 900 502 B 1 HETATM 18 C C26 900 . . . D 2 28.793 1.993 20.437 1 32.29 ? C26 900 502 B 1 HETATM 19 C C27 900 . . . D 2 29.788 1.806 19.46 1 31.39 ? C27 900 502 B 1 HETATM 20 C C28 900 . . . D 2 30.567 2.919 19.023 1 30.54 ? C28 900 502 B 1 HETATM 21 C C29 900 . . . D 2 30.325 4.184 19.617 1 31.53 ? C29 900 502 B 1 HETATM 22 O O32 900 . . . D 2 29.89 0.483 18.967 1 30.31 ? O32 900 502 B 1 HETATM 23 C C33 900 . . . D 2 30.704 -0.425 19.683 1 35.31 ? C33 900 502 B 1 HETATM 24 O O37 900 . . . D 2 31.552 2.709 18.027 1 29.02 ? O37 900 502 B 1 HETATM 25 C C38 900 . . . D 2 32.764 3.436 18.115 1 29.19 ? C38 900 502 B 1 HETATM 26 C C42 900 . . . D 2 24.192 2.851 28.508 1 29.62 ? C42 900 502 B 1 HETATM 27 N N43 900 . . . D 2 23.286 2.728 29.538 1 29.85 ? N43 900 502 B 1 HETATM 28 C C44 900 . . . D 2 23.598 2.683 30.906 1 31.92 ? C44 900 502 B 1 HETATM 29 C C45 900 . . . D 2 24.665 3.453 31.49 1 31.41 ? C45 900 502 B 1 HETATM 30 C C46 900 . . . D 2 24.947 3.381 32.871 1 32.22 ? C46 900 502 B 1 HETATM 31 C C47 900 . . . D 2 24.174 2.547 33.689 1 32.1 ? C47 900 502 B 1 HETATM 32 C C48 900 . . . D 2 23.112 1.77 33.162 1 32.23 ? C48 900 502 B 1 HETATM 33 C C49 900 . . . D 2 22.827 1.844 31.759 1 32.99 ? C49 900 502 B 1 HETATM 34 CL CL54 900 . . . D 2 24.541 2.482 35.377 1 33.01 ? CL54 900 502 B 1 HETATM 35 O O55 900 . . . D 2 25.387 2.94 28.728 1 33.26 ? O55 900 502 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #