data_3B8R # _model_server_result.job_id 64b05T-TzkaaYpsT-wbiXQ _model_server_result.datetime_utc '2024-12-26 12:41:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 3B8R # _exptl.entry_id 3B8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.453 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-cyclopropyl-6-[(6,7-dimethoxyquinolin-4-yl)oxy]naphthalene-1-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.362 _cell.angle_gamma 90 _cell.entry_id 3B8R _cell.length_a 55.436 _cell.length_b 67.972 _cell.length_c 87.687 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C25 H22 N2 O4' _chem_comp.formula_weight 414.453 _chem_comp.id 887 _chem_comp.mon_nstd_flag . _chem_comp.name N-cyclopropyl-6-[(6,7-dimethoxyquinolin-4-yl)oxy]naphthalene-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 O33 887 sing 1 n n O33 C28 887 sing 2 n n O32 C27 887 sing 3 n n O32 C38 887 sing 4 n n C28 C27 887 doub 5 n y C28 C29 887 sing 6 n y C27 C26 887 sing 7 n y C29 C20 887 doub 8 n y C26 C19 887 doub 9 n y C20 C19 887 sing 10 n y C20 N21 887 sing 11 n y C19 C18 887 sing 12 n y N21 C22 887 doub 13 n y C18 O17 887 sing 14 n n C18 C23 887 doub 15 n y C22 C23 887 sing 16 n y O17 C1 887 sing 17 n n C2 C1 887 doub 18 n y C2 C3 887 sing 19 n y C1 C6 887 sing 20 n y C10 C3 887 doub 21 n y C10 C11 887 sing 22 n y C3 C4 887 sing 23 n y C6 C5 887 doub 24 n y C11 C12 887 doub 25 n y C4 C5 887 sing 26 n y C4 C13 887 doub 27 n y C12 C13 887 sing 28 n y C13 C42 887 sing 29 n n C42 O45 887 doub 30 n n C42 N43 887 sing 31 n n N43 C44 887 sing 32 n n C44 C46 887 sing 33 n n C44 C47 887 sing 34 n n C46 C47 887 sing 35 n n C2 H2 887 sing 36 n n C5 H5 887 sing 37 n n C6 H6 887 sing 38 n n C10 H10 887 sing 39 n n C11 H11 887 sing 40 n n C12 H12 887 sing 41 n n C22 H22 887 sing 42 n n C23 H23 887 sing 43 n n C26 H26 887 sing 44 n n C29 H29 887 sing 45 n n C34 H341 887 sing 46 n n C34 H342 887 sing 47 n n C34 H343 887 sing 48 n n C38 H381 887 sing 49 n n C38 H382 887 sing 50 n n C38 H383 887 sing 51 n n N43 H43 887 sing 52 n n C44 H44 887 sing 53 n n C46 H461 887 sing 54 n n C46 H462 887 sing 55 n n C47 H471 887 sing 56 n n C47 H472 887 sing 57 n n # _atom_sites.entry_id 3B8R _atom_sites.fract_transf_matrix[1][1] 0.018039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000429 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 301 301 EDO EDO . D 3 887 A 1 201 201 887 887 . E 3 887 B 1 202 202 887 887 . F 4 HOH A 1 1179 1 HOH WAT . F 4 HOH A 2 1180 3 HOH WAT . F 4 HOH A 3 1181 4 HOH WAT . F 4 HOH A 4 1182 6 HOH WAT . F 4 HOH A 5 1183 7 HOH WAT . F 4 HOH A 6 1184 9 HOH WAT . F 4 HOH A 7 1185 10 HOH WAT . F 4 HOH A 8 1186 11 HOH WAT . F 4 HOH A 9 1187 14 HOH WAT . F 4 HOH A 10 1188 16 HOH WAT . F 4 HOH A 11 1189 19 HOH WAT . F 4 HOH A 12 1190 20 HOH WAT . F 4 HOH A 13 1191 21 HOH WAT . F 4 HOH A 14 1192 22 HOH WAT . F 4 HOH A 15 1193 24 HOH WAT . F 4 HOH A 16 1194 25 HOH WAT . F 4 HOH A 17 1195 26 HOH WAT . F 4 HOH A 18 1196 28 HOH WAT . F 4 HOH A 19 1197 30 HOH WAT . F 4 HOH A 20 1198 31 HOH WAT . F 4 HOH A 21 1199 32 HOH WAT . F 4 HOH A 22 1200 33 HOH WAT . F 4 HOH A 23 1201 34 HOH WAT . F 4 HOH A 24 1202 35 HOH WAT . F 4 HOH A 25 1203 37 HOH WAT . F 4 HOH A 26 1204 38 HOH WAT . F 4 HOH A 27 1205 42 HOH WAT . F 4 HOH A 28 1206 43 HOH WAT . F 4 HOH A 29 1207 44 HOH WAT . F 4 HOH A 30 1208 45 HOH WAT . F 4 HOH A 31 1209 46 HOH WAT . F 4 HOH A 32 1210 49 HOH WAT . F 4 HOH A 33 1211 51 HOH WAT . F 4 HOH A 34 1212 53 HOH WAT . F 4 HOH A 35 1213 54 HOH WAT . F 4 HOH A 36 1214 58 HOH WAT . F 4 HOH A 37 1215 59 HOH WAT . F 4 HOH A 38 1216 60 HOH WAT . F 4 HOH A 39 1217 62 HOH WAT . F 4 HOH A 40 1218 64 HOH WAT . F 4 HOH A 41 1219 65 HOH WAT . F 4 HOH A 42 1220 66 HOH WAT . F 4 HOH A 43 1221 68 HOH WAT . F 4 HOH A 44 1222 71 HOH WAT . F 4 HOH A 45 1223 73 HOH WAT . F 4 HOH A 46 1224 75 HOH WAT . F 4 HOH A 47 1225 76 HOH WAT . F 4 HOH A 48 1226 83 HOH WAT . F 4 HOH A 49 1227 86 HOH WAT . F 4 HOH A 50 1228 89 HOH WAT . F 4 HOH A 51 1229 96 HOH WAT . F 4 HOH A 52 1230 99 HOH WAT . F 4 HOH A 53 1231 100 HOH WAT . F 4 HOH A 54 1232 102 HOH WAT . F 4 HOH A 55 1233 103 HOH WAT . F 4 HOH A 56 1234 104 HOH WAT . F 4 HOH A 57 1235 107 HOH WAT . F 4 HOH A 58 1236 109 HOH WAT . F 4 HOH A 59 1237 110 HOH WAT . F 4 HOH A 60 1238 112 HOH WAT . F 4 HOH A 61 1239 114 HOH WAT . F 4 HOH A 62 1240 115 HOH WAT . F 4 HOH A 63 1241 117 HOH WAT . F 4 HOH A 64 1242 118 HOH WAT . F 4 HOH A 65 1243 123 HOH WAT . F 4 HOH A 66 1244 126 HOH WAT . F 4 HOH A 67 1245 128 HOH WAT . F 4 HOH A 68 1246 129 HOH WAT . F 4 HOH A 69 1247 130 HOH WAT . F 4 HOH A 70 1248 131 HOH WAT . F 4 HOH A 71 1249 132 HOH WAT . F 4 HOH A 72 1250 133 HOH WAT . F 4 HOH A 73 1251 134 HOH WAT . F 4 HOH A 74 1252 135 HOH WAT . F 4 HOH A 75 1253 136 HOH WAT . F 4 HOH A 76 1254 138 HOH WAT . F 4 HOH A 77 1255 139 HOH WAT . F 4 HOH A 78 1256 140 HOH WAT . F 4 HOH A 79 1257 141 HOH WAT . F 4 HOH A 80 1258 142 HOH WAT . F 4 HOH A 81 1259 143 HOH WAT . F 4 HOH A 82 1260 144 HOH WAT . F 4 HOH A 83 1261 145 HOH WAT . F 4 HOH A 84 1262 150 HOH WAT . G 4 HOH B 1 1179 2 HOH WAT . G 4 HOH B 2 1180 8 HOH WAT . G 4 HOH B 3 1181 13 HOH WAT . G 4 HOH B 4 1182 17 HOH WAT . G 4 HOH B 5 1183 27 HOH WAT . G 4 HOH B 6 1184 36 HOH WAT . G 4 HOH B 7 1185 47 HOH WAT . G 4 HOH B 8 1186 48 HOH WAT . G 4 HOH B 9 1187 57 HOH WAT . G 4 HOH B 10 1188 67 HOH WAT . G 4 HOH B 11 1189 70 HOH WAT . G 4 HOH B 12 1190 72 HOH WAT . G 4 HOH B 13 1191 81 HOH WAT . G 4 HOH B 14 1192 82 HOH WAT . G 4 HOH B 15 1193 85 HOH WAT . G 4 HOH B 16 1194 87 HOH WAT . G 4 HOH B 17 1195 92 HOH WAT . G 4 HOH B 18 1196 93 HOH WAT . G 4 HOH B 19 1197 98 HOH WAT . G 4 HOH B 20 1198 106 HOH WAT . G 4 HOH B 21 1199 108 HOH WAT . G 4 HOH B 22 1200 116 HOH WAT . G 4 HOH B 23 1201 122 HOH WAT . G 4 HOH B 24 1202 125 HOH WAT . G 4 HOH B 25 1203 146 HOH WAT . G 4 HOH B 26 1204 147 HOH WAT . G 4 HOH B 27 1205 148 HOH WAT . G 4 HOH B 28 1206 149 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 887 . . . D 3 9.663 -0.974 57.79 1 14.03 ? C1 887 201 A 1 HETATM 2 C C2 887 . . . D 3 8.28 -0.98 57.403 1 13.78 ? C2 887 201 A 1 HETATM 3 C C3 887 . . . D 3 7.646 0.247 57.008 1 17.85 ? C3 887 201 A 1 HETATM 4 C C4 887 . . . D 3 8.393 1.506 57.002 1 20.68 ? C4 887 201 A 1 HETATM 5 C C5 887 . . . D 3 9.794 1.462 57.404 1 20.18 ? C5 887 201 A 1 HETATM 6 C C6 887 . . . D 3 10.405 0.247 57.79 1 13.3 ? C6 887 201 A 1 HETATM 7 C C10 887 . . . D 3 6.279 0.226 56.628 1 17.1 ? C10 887 201 A 1 HETATM 8 C C11 887 . . . D 3 5.638 1.431 56.239 1 15.74 ? C11 887 201 A 1 HETATM 9 C C12 887 . . . D 3 6.343 2.662 56.22 1 14.9 ? C12 887 201 A 1 HETATM 10 C C13 887 . . . D 3 7.713 2.742 56.588 1 15.56 ? C13 887 201 A 1 HETATM 11 O O17 887 . . . D 3 10.31 -2.149 58.188 1 11.07 ? O17 887 201 A 1 HETATM 12 C C18 887 . . . D 3 10.985 -2.967 57.249 1 7.97 ? C18 887 201 A 1 HETATM 13 C C19 887 . . . D 3 11.812 -4.019 57.766 1 6.93 ? C19 887 201 A 1 HETATM 14 C C20 887 . . . D 3 12.522 -4.893 56.869 1 8.6 ? C20 887 201 A 1 HETATM 15 N N21 887 . . . D 3 12.378 -4.702 55.5 1 10.87 ? N21 887 201 A 1 HETATM 16 C C22 887 . . . D 3 11.596 -3.7 54.988 1 11.39 ? C22 887 201 A 1 HETATM 17 C C23 887 . . . D 3 10.878 -2.811 55.821 1 7.25 ? C23 887 201 A 1 HETATM 18 C C26 887 . . . D 3 11.953 -4.2 59.178 1 9.58 ? C26 887 201 A 1 HETATM 19 C C27 887 . . . D 3 12.781 -5.243 59.716 1 14.2 ? C27 887 201 A 1 HETATM 20 C C28 887 . . . D 3 13.488 -6.115 58.818 1 13.8 ? C28 887 201 A 1 HETATM 21 C C29 887 . . . D 3 13.334 -5.921 57.402 1 12.8 ? C29 887 201 A 1 HETATM 22 O O32 887 . . . D 3 12.841 -5.34 61.145 1 18 ? O32 887 201 A 1 HETATM 23 O O33 887 . . . D 3 14.3 -7.133 59.379 1 21.99 ? O33 887 201 A 1 HETATM 24 C C34 887 . . . D 3 14.721 -8.217 58.547 1 18.94 ? C34 887 201 A 1 HETATM 25 C C38 887 . . . D 3 12.953 -4.159 61.942 1 14.13 ? C38 887 201 A 1 HETATM 26 C C42 887 . . . D 3 8.382 4.067 56.532 1 16.8 ? C42 887 201 A 1 HETATM 27 N N43 887 . . . D 3 7.577 5.157 56.812 1 19.27 ? N43 887 201 A 1 HETATM 28 C C44 887 . . . D 3 8.077 6.513 56.801 1 13.09 ? C44 887 201 A 1 HETATM 29 O O45 887 . . . D 3 9.572 4.207 56.247 1 20.29 ? O45 887 201 A 1 HETATM 30 C C46 887 . . . D 3 8.055 6.851 55.33 1 13.25 ? C46 887 201 A 1 HETATM 31 C C47 887 . . . D 3 7.293 7.645 56.338 1 14.51 ? C47 887 201 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #