data_3B8R
#
_model_server_result.job_id            wELWr7cLXT9Nbo70pcPoUg 
_model_server_result.datetime_utc      '2024-12-26 13:03:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3b8r 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
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_entry.id    3B8R 
#
_exptl.entry_id    3B8R 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.362 
_cell.angle_gamma         90 
_cell.entry_id            3B8R 
_cell.length_a            55.436 
_cell.length_b            67.972 
_cell.length_c            87.687 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3B8R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 140 n n 
C1 C2 EDO sing 141 n n 
C1 H11 EDO sing 142 n n 
C1 H12 EDO sing 143 n n 
O1 HO1 EDO sing 144 n n 
C2 O2 EDO sing 145 n n 
C2 H21 EDO sing 146 n n 
C2 H22 EDO sing 147 n n 
O2 HO2 EDO sing 148 n n 
#
_atom_sites.entry_id                     3B8R 
_atom_sites.fract_transf_matrix[1][1]    0.018039 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000429 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014712 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011407 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 301 301 EDO EDO . 
D 3 887 A 1 201 201 887 887 . 
E 3 887 B 1 202 202 887 887 . 
F 4 HOH A 1 1179 1 HOH WAT . 
F 4 HOH A 2 1180 3 HOH WAT . 
F 4 HOH A 3 1181 4 HOH WAT . 
F 4 HOH A 4 1182 6 HOH WAT . 
F 4 HOH A 5 1183 7 HOH WAT . 
F 4 HOH A 6 1184 9 HOH WAT . 
F 4 HOH A 7 1185 10 HOH WAT . 
F 4 HOH A 8 1186 11 HOH WAT . 
F 4 HOH A 9 1187 14 HOH WAT . 
F 4 HOH A 10 1188 16 HOH WAT . 
F 4 HOH A 11 1189 19 HOH WAT . 
F 4 HOH A 12 1190 20 HOH WAT . 
F 4 HOH A 13 1191 21 HOH WAT . 
F 4 HOH A 14 1192 22 HOH WAT . 
F 4 HOH A 15 1193 24 HOH WAT . 
F 4 HOH A 16 1194 25 HOH WAT . 
F 4 HOH A 17 1195 26 HOH WAT . 
F 4 HOH A 18 1196 28 HOH WAT . 
F 4 HOH A 19 1197 30 HOH WAT . 
F 4 HOH A 20 1198 31 HOH WAT . 
F 4 HOH A 21 1199 32 HOH WAT . 
F 4 HOH A 22 1200 33 HOH WAT . 
F 4 HOH A 23 1201 34 HOH WAT . 
F 4 HOH A 24 1202 35 HOH WAT . 
F 4 HOH A 25 1203 37 HOH WAT . 
F 4 HOH A 26 1204 38 HOH WAT . 
F 4 HOH A 27 1205 42 HOH WAT . 
F 4 HOH A 28 1206 43 HOH WAT . 
F 4 HOH A 29 1207 44 HOH WAT . 
F 4 HOH A 30 1208 45 HOH WAT . 
F 4 HOH A 31 1209 46 HOH WAT . 
F 4 HOH A 32 1210 49 HOH WAT . 
F 4 HOH A 33 1211 51 HOH WAT . 
F 4 HOH A 34 1212 53 HOH WAT . 
F 4 HOH A 35 1213 54 HOH WAT . 
F 4 HOH A 36 1214 58 HOH WAT . 
F 4 HOH A 37 1215 59 HOH WAT . 
F 4 HOH A 38 1216 60 HOH WAT . 
F 4 HOH A 39 1217 62 HOH WAT . 
F 4 HOH A 40 1218 64 HOH WAT . 
F 4 HOH A 41 1219 65 HOH WAT . 
F 4 HOH A 42 1220 66 HOH WAT . 
F 4 HOH A 43 1221 68 HOH WAT . 
F 4 HOH A 44 1222 71 HOH WAT . 
F 4 HOH A 45 1223 73 HOH WAT . 
F 4 HOH A 46 1224 75 HOH WAT . 
F 4 HOH A 47 1225 76 HOH WAT . 
F 4 HOH A 48 1226 83 HOH WAT . 
F 4 HOH A 49 1227 86 HOH WAT . 
F 4 HOH A 50 1228 89 HOH WAT . 
F 4 HOH A 51 1229 96 HOH WAT . 
F 4 HOH A 52 1230 99 HOH WAT . 
F 4 HOH A 53 1231 100 HOH WAT . 
F 4 HOH A 54 1232 102 HOH WAT . 
F 4 HOH A 55 1233 103 HOH WAT . 
F 4 HOH A 56 1234 104 HOH WAT . 
F 4 HOH A 57 1235 107 HOH WAT . 
F 4 HOH A 58 1236 109 HOH WAT . 
F 4 HOH A 59 1237 110 HOH WAT . 
F 4 HOH A 60 1238 112 HOH WAT . 
F 4 HOH A 61 1239 114 HOH WAT . 
F 4 HOH A 62 1240 115 HOH WAT . 
F 4 HOH A 63 1241 117 HOH WAT . 
F 4 HOH A 64 1242 118 HOH WAT . 
F 4 HOH A 65 1243 123 HOH WAT . 
F 4 HOH A 66 1244 126 HOH WAT . 
F 4 HOH A 67 1245 128 HOH WAT . 
F 4 HOH A 68 1246 129 HOH WAT . 
F 4 HOH A 69 1247 130 HOH WAT . 
F 4 HOH A 70 1248 131 HOH WAT . 
F 4 HOH A 71 1249 132 HOH WAT . 
F 4 HOH A 72 1250 133 HOH WAT . 
F 4 HOH A 73 1251 134 HOH WAT . 
F 4 HOH A 74 1252 135 HOH WAT . 
F 4 HOH A 75 1253 136 HOH WAT . 
F 4 HOH A 76 1254 138 HOH WAT . 
F 4 HOH A 77 1255 139 HOH WAT . 
F 4 HOH A 78 1256 140 HOH WAT . 
F 4 HOH A 79 1257 141 HOH WAT . 
F 4 HOH A 80 1258 142 HOH WAT . 
F 4 HOH A 81 1259 143 HOH WAT . 
F 4 HOH A 82 1260 144 HOH WAT . 
F 4 HOH A 83 1261 145 HOH WAT . 
F 4 HOH A 84 1262 150 HOH WAT . 
G 4 HOH B 1 1179 2 HOH WAT . 
G 4 HOH B 2 1180 8 HOH WAT . 
G 4 HOH B 3 1181 13 HOH WAT . 
G 4 HOH B 4 1182 17 HOH WAT . 
G 4 HOH B 5 1183 27 HOH WAT . 
G 4 HOH B 6 1184 36 HOH WAT . 
G 4 HOH B 7 1185 47 HOH WAT . 
G 4 HOH B 8 1186 48 HOH WAT . 
G 4 HOH B 9 1187 57 HOH WAT . 
G 4 HOH B 10 1188 67 HOH WAT . 
G 4 HOH B 11 1189 70 HOH WAT . 
G 4 HOH B 12 1190 72 HOH WAT . 
G 4 HOH B 13 1191 81 HOH WAT . 
G 4 HOH B 14 1192 82 HOH WAT . 
G 4 HOH B 15 1193 85 HOH WAT . 
G 4 HOH B 16 1194 87 HOH WAT . 
G 4 HOH B 17 1195 92 HOH WAT . 
G 4 HOH B 18 1196 93 HOH WAT . 
G 4 HOH B 19 1197 98 HOH WAT . 
G 4 HOH B 20 1198 106 HOH WAT . 
G 4 HOH B 21 1199 108 HOH WAT . 
G 4 HOH B 22 1200 116 HOH WAT . 
G 4 HOH B 23 1201 122 HOH WAT . 
G 4 HOH B 24 1202 125 HOH WAT . 
G 4 HOH B 25 1203 146 HOH WAT . 
G 4 HOH B 26 1204 147 HOH WAT . 
G 4 HOH B 27 1205 148 HOH WAT . 
G 4 HOH B 28 1206 149 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 35.858 2.753 65.943 1 19.5 ? C1 EDO 301 A 1 
HETATM 2 O O1 EDO . . . C 2 37.126 3.281 66.36 1 13.19 ? O1 EDO 301 A 1 
HETATM 3 C C2 EDO . . . C 2 35.835 1.967 64.615 1 20.78 ? C2 EDO 301 A 1 
HETATM 4 O O2 EDO . . . C 2 35.133 0.694 64.634 1 21.02 ? O2 EDO 301 A 1 
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_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           80 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           408 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
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