data_3B9B # _model_server_result.job_id JF9Q3mZrNp2W_CZ_-kluuQ _model_server_result.datetime_utc '2024-11-08 09:57:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":995}' # _entry.id 3B9B # _exptl.entry_id 3B9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3B9B _cell.length_a 57.6 _cell.length_b 114.6 _cell.length_c 229.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A OE2 GLU 90 A GLU 90 1_555 D MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc2 A OD1 ASP 351 A ASP 351 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A OD2 ASP 351 A ASP 351 1_555 E BE BEF . A BEF 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc4 A O THR 353 A THR 353 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc5 A OD1 ASP 703 A ASP 703 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 C MG MG . A MG 996 1_555 F O HOH . A HOH 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc7 C MG MG . A MG 996 1_555 F O HOH . A HOH 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3B9B _atom_sites.fract_transf_matrix[1][1] 0.017361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 995 3 NA NA . C 3 MG A 1 996 1 MG MG2 . D 3 MG A 1 997 4 MG MG2 . E 4 BEF A 1 998 2 BEF BEF . F 5 HOH A 1 999 1 HOH HOH . F 5 HOH A 2 1000 2 HOH HOH . F 5 HOH A 3 1001 3 HOH HOH . F 5 HOH A 4 1002 7 HOH HOH . F 5 HOH A 5 1003 8 HOH HOH . F 5 HOH A 6 1004 9 HOH HOH . F 5 HOH A 7 1005 10 HOH HOH . F 5 HOH A 8 1006 11 HOH HOH . F 5 HOH A 9 1007 12 HOH HOH . F 5 HOH A 10 1008 13 HOH HOH . F 5 HOH A 11 1009 14 HOH HOH . F 5 HOH A 12 1010 15 HOH HOH . F 5 HOH A 13 1011 16 HOH HOH . F 5 HOH A 14 1012 17 HOH HOH . F 5 HOH A 15 1013 18 HOH HOH . F 5 HOH A 16 1014 19 HOH HOH . F 5 HOH A 17 1015 20 HOH HOH . F 5 HOH A 18 1016 21 HOH HOH . F 5 HOH A 19 1017 22 HOH HOH . F 5 HOH A 20 1018 23 HOH HOH . F 5 HOH A 21 1019 24 HOH HOH . F 5 HOH A 22 1020 25 HOH HOH . F 5 HOH A 23 1021 26 HOH HOH . F 5 HOH A 24 1022 27 HOH HOH . F 5 HOH A 25 1023 28 HOH HOH . F 5 HOH A 26 1024 29 HOH HOH . F 5 HOH A 27 1025 30 HOH HOH . F 5 HOH A 28 1026 31 HOH HOH . F 5 HOH A 29 1027 32 HOH HOH . F 5 HOH A 30 1028 33 HOH HOH . F 5 HOH A 31 1029 34 HOH HOH . F 5 HOH A 32 1030 35 HOH HOH . F 5 HOH A 33 1031 36 HOH HOH . F 5 HOH A 34 1032 37 HOH HOH . F 5 HOH A 35 1033 38 HOH HOH . F 5 HOH A 36 1034 39 HOH HOH . F 5 HOH A 37 1035 40 HOH HOH . F 5 HOH A 38 1036 41 HOH HOH . F 5 HOH A 39 1037 42 HOH HOH . F 5 HOH A 40 1038 43 HOH HOH . F 5 HOH A 41 1039 44 HOH HOH . F 5 HOH A 42 1040 45 HOH HOH . F 5 HOH A 43 1041 46 HOH HOH . F 5 HOH A 44 1042 47 HOH HOH . F 5 HOH A 45 1043 48 HOH HOH . F 5 HOH A 46 1044 49 HOH HOH . F 5 HOH A 47 1045 50 HOH HOH . F 5 HOH A 48 1046 51 HOH HOH . F 5 HOH A 49 1047 52 HOH HOH . F 5 HOH A 50 1048 53 HOH HOH . F 5 HOH A 51 1049 54 HOH HOH . F 5 HOH A 52 1050 55 HOH HOH . F 5 HOH A 53 1051 56 HOH HOH . F 5 HOH A 54 1052 57 HOH HOH . F 5 HOH A 55 1053 58 HOH HOH . F 5 HOH A 56 1054 59 HOH HOH . F 5 HOH A 57 1055 60 HOH HOH . F 5 HOH A 58 1056 61 HOH HOH . F 5 HOH A 59 1057 62 HOH HOH . F 5 HOH A 60 1058 63 HOH HOH . F 5 HOH A 61 1059 64 HOH HOH . F 5 HOH A 62 1060 65 HOH HOH . F 5 HOH A 63 1061 66 HOH HOH . F 5 HOH A 64 1062 67 HOH HOH . F 5 HOH A 65 1063 68 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -22.363 _atom_site.Cartn_y -6.944 _atom_site.Cartn_z -91.806 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 995 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #