data_3B9B
#
_model_server_result.job_id            VKqD5m7MGPwDpB46SfoTJw 
_model_server_result.datetime_utc      '2024-11-08 09:55:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3b9b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":998}' 
#
_entry.id    3B9B 
#
_exptl.entry_id    3B9B 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              66.007 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BERYLLIUM TRIFLUORIDE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3B9B 
_cell.length_a            57.6 
_cell.length_b            114.6 
_cell.length_c            229.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3B9B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 A OE2 GLU 90 A GLU 90 1_555 D MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc2 A OD1 ASP 351 A ASP 351 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc3 A OD2 ASP 351 A ASP 351 1_555 E BE BEF . A BEF 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
metalc ? metalc4 A O THR 353 A THR 353 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc5 A OD1 ASP 703 A ASP 703 1_555 C MG MG . A MG 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc6 C MG MG . A MG 996 1_555 F O HOH . A HOH 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc7 C MG MG . A MG 996 1_555 F O HOH . A HOH 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
#
_chem_comp.formula           'Be F3 -1' 
_chem_comp.formula_weight    66.007 
_chem_comp.id                BEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BERYLLIUM TRIFLUORIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BE F1 BEF sing 70 n n 
BE F2 BEF sing 71 n n 
BE F3 BEF sing 72 n n 
#
_atom_sites.entry_id                     3B9B 
_atom_sites.fract_transf_matrix[1][1]    0.017361 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008726 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004361 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 995 3 NA NA . 
C 3 MG A 1 996 1 MG MG2 . 
D 3 MG A 1 997 4 MG MG2 . 
E 4 BEF A 1 998 2 BEF BEF . 
F 5 HOH A 1 999 1 HOH HOH . 
F 5 HOH A 2 1000 2 HOH HOH . 
F 5 HOH A 3 1001 3 HOH HOH . 
F 5 HOH A 4 1002 7 HOH HOH . 
F 5 HOH A 5 1003 8 HOH HOH . 
F 5 HOH A 6 1004 9 HOH HOH . 
F 5 HOH A 7 1005 10 HOH HOH . 
F 5 HOH A 8 1006 11 HOH HOH . 
F 5 HOH A 9 1007 12 HOH HOH . 
F 5 HOH A 10 1008 13 HOH HOH . 
F 5 HOH A 11 1009 14 HOH HOH . 
F 5 HOH A 12 1010 15 HOH HOH . 
F 5 HOH A 13 1011 16 HOH HOH . 
F 5 HOH A 14 1012 17 HOH HOH . 
F 5 HOH A 15 1013 18 HOH HOH . 
F 5 HOH A 16 1014 19 HOH HOH . 
F 5 HOH A 17 1015 20 HOH HOH . 
F 5 HOH A 18 1016 21 HOH HOH . 
F 5 HOH A 19 1017 22 HOH HOH . 
F 5 HOH A 20 1018 23 HOH HOH . 
F 5 HOH A 21 1019 24 HOH HOH . 
F 5 HOH A 22 1020 25 HOH HOH . 
F 5 HOH A 23 1021 26 HOH HOH . 
F 5 HOH A 24 1022 27 HOH HOH . 
F 5 HOH A 25 1023 28 HOH HOH . 
F 5 HOH A 26 1024 29 HOH HOH . 
F 5 HOH A 27 1025 30 HOH HOH . 
F 5 HOH A 28 1026 31 HOH HOH . 
F 5 HOH A 29 1027 32 HOH HOH . 
F 5 HOH A 30 1028 33 HOH HOH . 
F 5 HOH A 31 1029 34 HOH HOH . 
F 5 HOH A 32 1030 35 HOH HOH . 
F 5 HOH A 33 1031 36 HOH HOH . 
F 5 HOH A 34 1032 37 HOH HOH . 
F 5 HOH A 35 1033 38 HOH HOH . 
F 5 HOH A 36 1034 39 HOH HOH . 
F 5 HOH A 37 1035 40 HOH HOH . 
F 5 HOH A 38 1036 41 HOH HOH . 
F 5 HOH A 39 1037 42 HOH HOH . 
F 5 HOH A 40 1038 43 HOH HOH . 
F 5 HOH A 41 1039 44 HOH HOH . 
F 5 HOH A 42 1040 45 HOH HOH . 
F 5 HOH A 43 1041 46 HOH HOH . 
F 5 HOH A 44 1042 47 HOH HOH . 
F 5 HOH A 45 1043 48 HOH HOH . 
F 5 HOH A 46 1044 49 HOH HOH . 
F 5 HOH A 47 1045 50 HOH HOH . 
F 5 HOH A 48 1046 51 HOH HOH . 
F 5 HOH A 49 1047 52 HOH HOH . 
F 5 HOH A 50 1048 53 HOH HOH . 
F 5 HOH A 51 1049 54 HOH HOH . 
F 5 HOH A 52 1050 55 HOH HOH . 
F 5 HOH A 53 1051 56 HOH HOH . 
F 5 HOH A 54 1052 57 HOH HOH . 
F 5 HOH A 55 1053 58 HOH HOH . 
F 5 HOH A 56 1054 59 HOH HOH . 
F 5 HOH A 57 1055 60 HOH HOH . 
F 5 HOH A 58 1056 61 HOH HOH . 
F 5 HOH A 59 1057 62 HOH HOH . 
F 5 HOH A 60 1058 63 HOH HOH . 
F 5 HOH A 61 1059 64 HOH HOH . 
F 5 HOH A 62 1060 65 HOH HOH . 
F 5 HOH A 63 1061 66 HOH HOH . 
F 5 HOH A 64 1062 67 HOH HOH . 
F 5 HOH A 65 1063 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 BE BE BEF . . . E 4 -24.646 -1.064 -108.413 1 37.95 ? BE BEF 998 A 1 
HETATM 2 F F1 BEF . . . E 4 -24.22 -2.295 -108.839 1 30.68 ? F1 BEF 998 A 1 
HETATM 3 F F2 BEF . . . E 4 -25.963 -0.902 -108.74 1 45.76 ? F2 BEF 998 A 1 
HETATM 4 F F3 BEF . . . E 4 -23.903 -0.04 -108.942 1 35.01 ? F3 BEF 998 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#