data_3B9H # _model_server_result.job_id mdVgYtnKc4025m4y_X9Oug _model_server_result.datetime_utc '2024-10-11 09:20:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3b9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":267}' # _entry.id 3B9H # _exptl.entry_id 3B9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3B9H _cell.length_a 71.6 _cell.length_b 71.6 _cell.length_c 115.32 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3B9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 76.88 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C CXM 1 A CXM 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale2 A SG CYS 146 A CYS 146 1_555 D C6 NDU . A NDU 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 320 n n P O2 PO4 sing 321 n n P O3 PO4 sing 322 n n P O4 PO4 sing 323 n n # _atom_sites.entry_id 3B9H _atom_sites.fract_transf_matrix[1][1] 0.013966 _atom_sites.fract_transf_matrix[1][2] 0.008064 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 267 267 PO4 PO4 . C 2 PO4 A 1 268 268 PO4 PO4 . D 3 NDU A 1 265 265 NDU NDU . E 4 HOH A 1 300 300 HOH HOH . E 4 HOH A 2 301 301 HOH HOH . E 4 HOH A 3 302 302 HOH HOH . E 4 HOH A 4 303 303 HOH HOH . E 4 HOH A 5 304 304 HOH HOH . E 4 HOH A 6 305 305 HOH HOH . E 4 HOH A 7 306 306 HOH HOH . E 4 HOH A 8 307 307 HOH HOH . E 4 HOH A 9 308 308 HOH HOH . E 4 HOH A 10 309 309 HOH HOH . E 4 HOH A 11 310 310 HOH HOH . E 4 HOH A 12 311 311 HOH HOH . E 4 HOH A 13 312 312 HOH HOH . E 4 HOH A 14 313 313 HOH HOH . E 4 HOH A 15 314 314 HOH HOH . E 4 HOH A 16 315 315 HOH HOH . E 4 HOH A 17 316 316 HOH HOH . E 4 HOH A 18 317 317 HOH HOH . E 4 HOH A 19 318 318 HOH HOH . E 4 HOH A 20 319 319 HOH HOH . E 4 HOH A 21 320 320 HOH HOH . E 4 HOH A 22 321 321 HOH HOH . E 4 HOH A 23 322 322 HOH HOH . E 4 HOH A 24 323 323 HOH HOH . E 4 HOH A 25 324 324 HOH HOH . E 4 HOH A 26 325 325 HOH HOH . E 4 HOH A 27 326 326 HOH HOH . E 4 HOH A 28 327 327 HOH HOH . E 4 HOH A 29 328 328 HOH HOH . E 4 HOH A 30 329 329 HOH HOH . E 4 HOH A 31 330 330 HOH HOH . E 4 HOH A 32 331 331 HOH HOH . E 4 HOH A 33 332 332 HOH HOH . E 4 HOH A 34 333 333 HOH HOH . E 4 HOH A 35 334 334 HOH HOH . E 4 HOH A 36 335 335 HOH HOH . E 4 HOH A 37 336 336 HOH HOH . E 4 HOH A 38 337 337 HOH HOH . E 4 HOH A 39 338 338 HOH HOH . E 4 HOH A 40 339 339 HOH HOH . E 4 HOH A 41 340 340 HOH HOH . E 4 HOH A 42 341 341 HOH HOH . E 4 HOH A 43 342 342 HOH HOH . E 4 HOH A 44 343 343 HOH HOH . E 4 HOH A 45 344 344 HOH HOH . E 4 HOH A 46 345 345 HOH HOH . E 4 HOH A 47 346 346 HOH HOH . E 4 HOH A 48 347 347 HOH HOH . E 4 HOH A 49 348 348 HOH HOH . E 4 HOH A 50 349 349 HOH HOH . E 4 HOH A 51 350 350 HOH HOH . E 4 HOH A 52 351 351 HOH HOH . E 4 HOH A 53 352 352 HOH HOH . E 4 HOH A 54 353 353 HOH HOH . E 4 HOH A 55 354 354 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 53.569 -31.161 28.704 1 48.91 ? P PO4 267 A 1 HETATM 2 O O1 PO4 . . . B 2 52.486 -32.135 28.367 1 46.44 ? O1 PO4 267 A 1 HETATM 3 O O2 PO4 . . . B 2 54.4 -30.83 27.469 1 47.51 ? O2 PO4 267 A 1 HETATM 4 O O3 PO4 . . . B 2 54.496 -31.699 29.779 1 48.86 ? O3 PO4 267 A 1 HETATM 5 O O4 PO4 . . . B 2 52.758 -30.012 29.26 1 48.41 ? O4 PO4 267 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #