data_3BA6 # _model_server_result.job_id u8N0JNWCIPqjSY-pxbeQFA _model_server_result.datetime_utc '2024-11-28 10:18:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ba6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1001}' # _entry.id 3BA6 # _exptl.entry_id 3BA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.216 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMP PHOSPHORAMIDATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.01 _cell.angle_gamma 90 _cell.entry_id 3BA6 _cell.length_a 162.51 _cell.length_b 75.967 _cell.length_c 152.407 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 350 A SER 350 1_555 A N PHD 351 A PHD 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C PHD 351 A PHD 351 1_555 A N LYS 352 A LYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A O VAL 304 A VAL 304 1_555 B CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc2 A O ALA 305 A ALA 305 1_555 B CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc3 A O ILE 307 A ILE 307 1_555 B CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc4 A OE2 GLU 309 A GLU 309 1_555 B CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc5 A OD2 PHD 351 A PHD 351 1_555 D CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc6 A OP1 PHD 351 A PHD 351 1_555 D CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc7 A O THR 353 A THR 353 1_555 D CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc8 A OD2 ASP 703 A ASP 703 1_555 D CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc9 A OD1 ASN 768 A ASN 768 1_555 C CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc10 A OE2 GLU 771 A GLU 771 1_555 C CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc11 A OD1 ASN 796 A ASN 796 1_555 B CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc12 A OG1 THR 799 A THR 799 1_555 C CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc13 A OD2 ASP 800 A ASP 800 1_555 B CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc14 A OD2 ASP 800 A ASP 800 1_555 C CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc15 A OE2 GLU 908 A GLU 908 1_555 C CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc16 D CA CA . A CA 1005 1_555 G O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc17 D CA CA . A CA 1005 1_555 G O HOH . A HOH 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc18 D CA CA . A CA 1005 1_555 G O HOH . A HOH 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? # _chem_comp.formula 'C10 H16 N6 O9 P2' _chem_comp.formula_weight 426.216 _chem_comp.id AN2 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMP PHOSPHORAMIDATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3B PB AN2 sing 13 n n N3B H3B1 AN2 sing 14 n n N3B H3B2 AN2 sing 15 n n PB O2B AN2 sing 16 n n PB O1B AN2 doub 17 n n PB O3A AN2 sing 18 n n O2B HO2B AN2 sing 19 n n O3A PA AN2 sing 20 n n PA O1A AN2 doub 21 n n PA O2A AN2 sing 22 n n PA O5' AN2 sing 23 n n O2A HO2A AN2 sing 24 n n O5' C5' AN2 sing 25 n n C5' C4' AN2 sing 26 n n C5' "H5'1" AN2 sing 27 n n C5' "H5'2" AN2 sing 28 n n C4' O4' AN2 sing 29 n n C4' C3' AN2 sing 30 n n C4' H4' AN2 sing 31 n n O4' C1' AN2 sing 32 n n C3' O3' AN2 sing 33 n n C3' C2' AN2 sing 34 n n C3' H3' AN2 sing 35 n n O3' HA AN2 sing 36 n n C2' O2' AN2 sing 37 n n C2' C1' AN2 sing 38 n n C2' H2' AN2 sing 39 n n O2' HB AN2 sing 40 n n C1' N9 AN2 sing 41 n n C1' H1' AN2 sing 42 n n N9 C8 AN2 sing 43 n y N9 C4 AN2 sing 44 n y C8 N7 AN2 doub 45 n y C8 H8 AN2 sing 46 n n N7 C5 AN2 sing 47 n y C5 C4 AN2 doub 48 n y C5 C6 AN2 sing 49 n y C4 N3 AN2 sing 50 n y N3 C2 AN2 doub 51 n y C2 N1 AN2 sing 52 n y C2 H2 AN2 sing 53 n n N1 C6 AN2 doub 54 n y C6 N6 AN2 sing 55 n n N6 H6N1 AN2 sing 56 n n N6 H6N2 AN2 sing 57 n n # _atom_sites.entry_id 3BA6 _atom_sites.fract_transf_matrix[1][1] 0.006153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00212 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1003 1003 CA CA . C 2 CA A 1 1004 1004 CA CA . D 2 CA A 1 1005 1005 CA CA . E 3 K A 1 1006 1006 K K . F 4 AN2 A 1 1001 1001 AN2 PNH . G 5 HOH A 1 1008 1008 HOH HOH . G 5 HOH A 2 1042 1042 HOH HOH . G 5 HOH A 3 1044 1044 HOH HOH . G 5 HOH A 4 1045 1045 HOH HOH . G 5 HOH A 5 1046 1046 HOH HOH . G 5 HOH A 6 1047 1047 HOH HOH . G 5 HOH A 7 1048 1048 HOH HOH . G 5 HOH A 8 1049 1049 HOH HOH . G 5 HOH A 9 1050 1050 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3B AN2 . . . F 4 -16.445 3.936 13.955 1 97.06 ? N3B AN2 1001 A 1 HETATM 2 P PB AN2 . . . F 4 -16.415 2.832 12.619 1 64.94 ? PB AN2 1001 A 1 HETATM 3 O O2B AN2 . . . F 4 -15.43 3.463 11.489 1 80.39 ? O2B AN2 1001 A 1 HETATM 4 O O1B AN2 . . . F 4 -17.602 2.667 12.224 1 68 ? O1B AN2 1001 A 1 HETATM 5 O O3A AN2 . . . F 4 -15.932 1.336 13.005 1 71.65 ? O3A AN2 1001 A 1 HETATM 6 P PA AN2 . . . F 4 -15.074 0.522 11.867 1 64.97 ? PA AN2 1001 A 1 HETATM 7 O O1A AN2 . . . F 4 -13.465 0.947 11.951 1 63.3 ? O1A AN2 1001 A 1 HETATM 8 O O2A AN2 . . . F 4 -15.224 -0.924 12.166 1 64.21 ? O2A AN2 1001 A 1 HETATM 9 O O5' AN2 . . . F 4 -15.576 0.794 10.321 1 89.5 ? O5' AN2 1001 A 1 HETATM 10 C C5' AN2 . . . F 4 -14.815 1.673 9.513 1 80.88 ? C5' AN2 1001 A 1 HETATM 11 C C4' AN2 . . . F 4 -15.612 1.947 8.235 1 69 ? C4' AN2 1001 A 1 HETATM 12 O O4' AN2 . . . F 4 -16.116 0.727 7.63 1 64.4 ? O4' AN2 1001 A 1 HETATM 13 C C3' AN2 . . . F 4 -16.856 2.677 8.753 1 64.41 ? C3' AN2 1001 A 1 HETATM 14 O O3' AN2 . . . F 4 -16.604 4.039 9.074 1 60.81 ? O3' AN2 1001 A 1 HETATM 15 C C2' AN2 . . . F 4 -17.802 2.383 7.614 1 61.47 ? C2' AN2 1001 A 1 HETATM 16 O O2' AN2 . . . F 4 -17.887 3.425 6.693 1 61.42 ? O2' AN2 1001 A 1 HETATM 17 C C1' AN2 . . . F 4 -17.332 1.087 6.937 1 58.89 ? C1' AN2 1001 A 1 HETATM 18 N N9 AN2 . . . F 4 -18.393 0.139 7.298 1 67.17 ? N9 AN2 1001 A 1 HETATM 19 C C8 AN2 . . . F 4 -18.703 -0.163 8.661 1 73.23 ? C8 AN2 1001 A 1 HETATM 20 N N7 AN2 . . . F 4 -19.674 -1.221 8.681 1 76.51 ? N7 AN2 1001 A 1 HETATM 21 C C5 AN2 . . . F 4 -19.67 -1.862 7.366 1 72.51 ? C5 AN2 1001 A 1 HETATM 22 C C4 AN2 . . . F 4 -18.936 -0.937 6.474 1 71 ? C4 AN2 1001 A 1 HETATM 23 N N3 AN2 . . . F 4 -18.757 -1.256 5.211 1 74.82 ? N3 AN2 1001 A 1 HETATM 24 C C2 AN2 . . . F 4 -19.288 -2.457 4.757 1 76.57 ? C2 AN2 1001 A 1 HETATM 25 N N1 AN2 . . . F 4 -19.988 -3.34 5.582 1 66.76 ? N1 AN2 1001 A 1 HETATM 26 C C6 AN2 . . . F 4 -20.169 -3.033 6.854 1 68.03 ? C6 AN2 1001 A 1 HETATM 27 N N6 AN2 . . . F 4 -20.939 -3.941 7.689 1 82.98 ? N6 AN2 1001 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #