data_3BAF # _model_server_result.job_id L2742-68sObQH-jBt1UfJg _model_server_result.datetime_utc '2024-11-02 08:32:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3baf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 3BAF # _exptl.entry_id 3BAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BAF _cell.length_a 67.297 _cell.length_b 67.297 _cell.length_c 97.692 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3BAF _atom_sites.fract_transf_matrix[1][1] 0.014859 _atom_sites.fract_transf_matrix[1][2] 0.008579 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 700 700 ANP ANP . C 3 SKM A 1 500 500 SKM SKM . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 3 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 5 HOH HOH . D 4 HOH A 6 706 6 HOH HOH . D 4 HOH A 7 707 7 HOH HOH . D 4 HOH A 8 708 8 HOH HOH . D 4 HOH A 9 709 9 HOH HOH . D 4 HOH A 10 710 10 HOH HOH . D 4 HOH A 11 711 11 HOH HOH . D 4 HOH A 12 712 12 HOH HOH . D 4 HOH A 13 713 13 HOH HOH . D 4 HOH A 14 714 14 HOH HOH . D 4 HOH A 15 715 15 HOH HOH . D 4 HOH A 16 716 16 HOH HOH . D 4 HOH A 17 717 17 HOH HOH . D 4 HOH A 18 718 18 HOH HOH . D 4 HOH A 19 719 19 HOH HOH . D 4 HOH A 20 720 20 HOH HOH . D 4 HOH A 21 721 21 HOH HOH . D 4 HOH A 22 722 22 HOH HOH . D 4 HOH A 23 723 23 HOH HOH . D 4 HOH A 24 724 24 HOH HOH . D 4 HOH A 25 725 25 HOH HOH . D 4 HOH A 26 726 26 HOH HOH . D 4 HOH A 27 727 27 HOH HOH . D 4 HOH A 28 728 28 HOH HOH . D 4 HOH A 29 729 29 HOH HOH . D 4 HOH A 30 730 30 HOH HOH . D 4 HOH A 31 731 31 HOH HOH . D 4 HOH A 32 732 32 HOH HOH . D 4 HOH A 33 733 33 HOH HOH . D 4 HOH A 34 734 34 HOH HOH . D 4 HOH A 35 735 35 HOH HOH . D 4 HOH A 36 736 36 HOH HOH . D 4 HOH A 37 737 37 HOH HOH . D 4 HOH A 38 738 38 HOH HOH . D 4 HOH A 39 739 39 HOH HOH . D 4 HOH A 40 740 40 HOH HOH . D 4 HOH A 41 741 41 HOH HOH . D 4 HOH A 42 742 42 HOH HOH . D 4 HOH A 43 743 43 HOH HOH . D 4 HOH A 44 744 44 HOH HOH . D 4 HOH A 45 745 45 HOH HOH . D 4 HOH A 46 746 46 HOH HOH . D 4 HOH A 47 747 47 HOH HOH . D 4 HOH A 48 748 48 HOH HOH . D 4 HOH A 49 749 49 HOH HOH . D 4 HOH A 50 750 50 HOH HOH . D 4 HOH A 51 751 51 HOH HOH . D 4 HOH A 52 752 52 HOH HOH . D 4 HOH A 53 753 53 HOH HOH . D 4 HOH A 54 754 54 HOH HOH . D 4 HOH A 55 755 55 HOH HOH . D 4 HOH A 56 756 56 HOH HOH . D 4 HOH A 57 757 57 HOH HOH . D 4 HOH A 58 758 58 HOH HOH . D 4 HOH A 59 759 59 HOH HOH . D 4 HOH A 60 760 60 HOH HOH . D 4 HOH A 61 761 61 HOH HOH . D 4 HOH A 62 762 62 HOH HOH . D 4 HOH A 63 763 63 HOH HOH . D 4 HOH A 64 764 64 HOH HOH . D 4 HOH A 65 765 65 HOH HOH . D 4 HOH A 66 766 66 HOH HOH . D 4 HOH A 67 767 67 HOH HOH . D 4 HOH A 68 768 68 HOH HOH . D 4 HOH A 69 769 69 HOH HOH . D 4 HOH A 70 770 70 HOH HOH . D 4 HOH A 71 771 71 HOH HOH . D 4 HOH A 72 772 72 HOH HOH . D 4 HOH A 73 773 73 HOH HOH . D 4 HOH A 74 774 74 HOH HOH . D 4 HOH A 75 775 75 HOH HOH . D 4 HOH A 76 776 76 HOH HOH . D 4 HOH A 77 777 77 HOH HOH . D 4 HOH A 78 778 78 HOH HOH . D 4 HOH A 79 779 79 HOH HOH . D 4 HOH A 80 780 80 HOH HOH . D 4 HOH A 81 781 81 HOH HOH . D 4 HOH A 82 782 82 HOH HOH . D 4 HOH A 83 783 83 HOH HOH . D 4 HOH A 84 784 84 HOH HOH . D 4 HOH A 85 785 85 HOH HOH . D 4 HOH A 86 786 86 HOH HOH . D 4 HOH A 87 787 87 HOH HOH . D 4 HOH A 88 788 88 HOH HOH . D 4 HOH A 89 789 89 HOH HOH . D 4 HOH A 90 790 90 HOH HOH . D 4 HOH A 91 791 91 HOH HOH . D 4 HOH A 92 792 92 HOH HOH . D 4 HOH A 93 793 93 HOH HOH . D 4 HOH A 94 794 94 HOH HOH . D 4 HOH A 95 795 95 HOH HOH . D 4 HOH A 96 796 96 HOH HOH . D 4 HOH A 97 797 97 HOH HOH . D 4 HOH A 98 798 98 HOH HOH . D 4 HOH A 99 799 99 HOH HOH . D 4 HOH A 100 800 100 HOH HOH . D 4 HOH A 101 801 101 HOH HOH . D 4 HOH A 102 802 102 HOH HOH . D 4 HOH A 103 803 103 HOH HOH . D 4 HOH A 104 804 104 HOH HOH . D 4 HOH A 105 805 105 HOH HOH . D 4 HOH A 106 806 106 HOH HOH . D 4 HOH A 107 807 107 HOH HOH . D 4 HOH A 108 808 108 HOH HOH . D 4 HOH A 109 809 109 HOH HOH . D 4 HOH A 110 810 110 HOH HOH . D 4 HOH A 111 811 111 HOH HOH . D 4 HOH A 112 812 112 HOH HOH . D 4 HOH A 113 813 113 HOH HOH . D 4 HOH A 114 814 114 HOH HOH . D 4 HOH A 115 815 115 HOH HOH . D 4 HOH A 116 816 116 HOH HOH . D 4 HOH A 117 817 117 HOH HOH . D 4 HOH A 118 818 118 HOH HOH . D 4 HOH A 119 819 119 HOH HOH . D 4 HOH A 120 820 120 HOH HOH . D 4 HOH A 121 821 121 HOH HOH . D 4 HOH A 122 822 122 HOH HOH . D 4 HOH A 123 823 123 HOH HOH . D 4 HOH A 124 824 124 HOH HOH . D 4 HOH A 125 825 125 HOH HOH . D 4 HOH A 126 826 126 HOH HOH . D 4 HOH A 127 827 127 HOH HOH . D 4 HOH A 128 828 128 HOH HOH . D 4 HOH A 129 829 129 HOH HOH . D 4 HOH A 130 830 130 HOH HOH . D 4 HOH A 131 831 131 HOH HOH . D 4 HOH A 132 832 132 HOH HOH . D 4 HOH A 133 833 133 HOH HOH . D 4 HOH A 134 834 134 HOH HOH . D 4 HOH A 135 835 135 HOH HOH . D 4 HOH A 136 836 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -19.708 11.418 33.418 1 48.13 ? PG ANP 700 A 1 HETATM 2 O O1G ANP . . . B 2 -18.768 10.468 32.67 1 43.76 ? O1G ANP 700 A 1 HETATM 3 O O2G ANP . . . B 2 -19.65 10.749 34.8 1 43.27 ? O2G ANP 700 A 1 HETATM 4 O O3G ANP . . . B 2 -21.082 11.192 32.889 1 37.76 ? O3G ANP 700 A 1 HETATM 5 P PB ANP . . . B 2 -19.309 14.944 34.259 1 26.13 ? PB ANP 700 A 1 HETATM 6 O O1B ANP . . . B 2 -20.762 15.445 34.344 1 18.28 ? O1B ANP 700 A 1 HETATM 7 O O2B ANP . . . B 2 -18.849 14.554 35.646 1 23.6 ? O2B ANP 700 A 1 HETATM 8 N N3B ANP . . . B 2 -19.118 13.321 33.306 1 37.13 ? N3B ANP 700 A 1 HETATM 9 P PA ANP . . . B 2 -17.113 17.103 34.492 1 27.62 ? PA ANP 700 A 1 HETATM 10 O O1A ANP . . . B 2 -17.123 17.688 35.868 1 27.79 ? O1A ANP 700 A 1 HETATM 11 O O2A ANP . . . B 2 -16.116 16.066 34.153 1 17.37 ? O2A ANP 700 A 1 HETATM 12 O O3A ANP . . . B 2 -18.614 16.476 34.059 1 26.41 ? O3A ANP 700 A 1 HETATM 13 O O5' ANP . . . B 2 -16.813 18.352 33.439 1 26.68 ? O5' ANP 700 A 1 HETATM 14 C C5' ANP . . . B 2 -16.367 18.195 32.042 1 25.97 ? C5' ANP 700 A 1 HETATM 15 C C4' ANP . . . B 2 -15.442 19.356 31.546 1 24.59 ? C4' ANP 700 A 1 HETATM 16 O O4' ANP . . . B 2 -16.251 20.542 31.466 1 20.7 ? O4' ANP 700 A 1 HETATM 17 C C3' ANP . . . B 2 -14.252 19.666 32.533 1 24.97 ? C3' ANP 700 A 1 HETATM 18 O O3' ANP . . . B 2 -12.914 19.976 31.987 1 27.46 ? O3' ANP 700 A 1 HETATM 19 C C2' ANP . . . B 2 -14.731 20.891 33.266 1 19.16 ? C2' ANP 700 A 1 HETATM 20 O O2' ANP . . . B 2 -13.541 21.639 33.566 1 32.68 ? O2' ANP 700 A 1 HETATM 21 C C1' ANP . . . B 2 -15.708 21.607 32.315 1 18.54 ? C1' ANP 700 A 1 HETATM 22 N N9 ANP . . . B 2 -16.785 22.432 32.969 1 19.97 ? N9 ANP 700 A 1 HETATM 23 C C8 ANP . . . B 2 -17.687 21.888 33.886 1 22.34 ? C8 ANP 700 A 1 HETATM 24 N N7 ANP . . . B 2 -18.606 22.809 34.311 1 23.4 ? N7 ANP 700 A 1 HETATM 25 C C5 ANP . . . B 2 -18.329 23.977 33.661 1 20.55 ? C5 ANP 700 A 1 HETATM 26 C C6 ANP . . . B 2 -18.87 25.353 33.694 1 19.47 ? C6 ANP 700 A 1 HETATM 27 N N6 ANP . . . B 2 -19.941 25.713 34.466 1 21.11 ? N6 ANP 700 A 1 HETATM 28 N N1 ANP . . . B 2 -18.274 26.287 32.881 1 23.85 ? N1 ANP 700 A 1 HETATM 29 C C2 ANP . . . B 2 -17.174 26.014 32.114 1 20.58 ? C2 ANP 700 A 1 HETATM 30 N N3 ANP . . . B 2 -16.643 24.791 32.023 1 20.92 ? N3 ANP 700 A 1 HETATM 31 C C4 ANP . . . B 2 -17.121 23.733 32.789 1 20.69 ? C4 ANP 700 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #