data_3BAY # _model_server_result.job_id Sr-SB6ff36-2Z9Da6DkJwA _model_server_result.datetime_utc '2024-11-05 23:28:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":498}' # _entry.id 3BAY # _exptl.entry_id 3BAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BAY _cell.length_a 52.227 _cell.length_b 68.889 _cell.length_c 131.191 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 378 A CYS 378 1_555 A SG CYS 384 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 450 A CYS 450 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N TYR 2 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A ND2 ASN 461 A ASN 461 1_555 B C1 NAG . A NAG 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? metalc ? metalc1 A OD1 ASN 100 A ASN 100 1_555 D CA CA . A CA 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc2 A O ARG 158 A ARG 158 1_555 D CA CA . A CA 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc3 A OD1 ASP 167 A ASP 167 1_555 D CA CA . A CA 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc4 A OD2 ASP 167 A ASP 167 1_555 D CA CA . A CA 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 A O HIS 201 A HIS 201 1_555 D CA CA . A CA 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc6 D CA CA . A CA 498 1_555 F O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BAY _atom_sites.fract_transf_matrix[1][1] 0.019147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 497 497 NAG NAG . C 3 ARE A 1 500 500 ARE ACB . D 4 CA A 1 498 498 CA CA2 . E 5 NO3 A 1 501 501 NO3 NO3 . F 6 HOH A 1 502 1 HOH HOH . F 6 HOH A 2 503 2 HOH HOH . F 6 HOH A 3 504 3 HOH HOH . F 6 HOH A 4 505 4 HOH HOH . F 6 HOH A 5 506 5 HOH HOH . F 6 HOH A 6 507 6 HOH HOH . F 6 HOH A 7 508 7 HOH HOH . F 6 HOH A 8 509 8 HOH HOH . F 6 HOH A 9 510 9 HOH HOH . F 6 HOH A 10 511 10 HOH HOH . F 6 HOH A 11 512 11 HOH HOH . F 6 HOH A 12 513 12 HOH HOH . F 6 HOH A 13 514 13 HOH HOH . F 6 HOH A 14 515 14 HOH HOH . F 6 HOH A 15 516 15 HOH HOH . F 6 HOH A 16 517 16 HOH HOH . F 6 HOH A 17 518 17 HOH HOH . F 6 HOH A 18 519 18 HOH HOH . F 6 HOH A 19 520 19 HOH HOH . F 6 HOH A 20 521 20 HOH HOH . F 6 HOH A 21 522 21 HOH HOH . F 6 HOH A 22 523 22 HOH HOH . F 6 HOH A 23 524 23 HOH HOH . F 6 HOH A 24 525 24 HOH HOH . F 6 HOH A 25 526 25 HOH HOH . F 6 HOH A 26 527 26 HOH HOH . F 6 HOH A 27 528 27 HOH HOH . F 6 HOH A 28 529 28 HOH HOH . F 6 HOH A 29 530 29 HOH HOH . F 6 HOH A 30 531 30 HOH HOH . F 6 HOH A 31 532 31 HOH HOH . F 6 HOH A 32 533 32 HOH HOH . F 6 HOH A 33 534 33 HOH HOH . F 6 HOH A 34 535 34 HOH HOH . F 6 HOH A 35 536 35 HOH HOH . F 6 HOH A 36 537 36 HOH HOH . F 6 HOH A 37 538 37 HOH HOH . F 6 HOH A 38 539 38 HOH HOH . F 6 HOH A 39 540 39 HOH HOH . F 6 HOH A 40 541 40 HOH HOH . F 6 HOH A 41 542 41 HOH HOH . F 6 HOH A 42 543 42 HOH HOH . F 6 HOH A 43 544 43 HOH HOH . F 6 HOH A 44 545 44 HOH HOH . F 6 HOH A 45 546 45 HOH HOH . F 6 HOH A 46 547 46 HOH HOH . F 6 HOH A 47 548 47 HOH HOH . F 6 HOH A 48 549 48 HOH HOH . F 6 HOH A 49 550 49 HOH HOH . F 6 HOH A 50 551 50 HOH HOH . F 6 HOH A 51 552 51 HOH HOH . F 6 HOH A 52 553 52 HOH HOH . F 6 HOH A 53 554 53 HOH HOH . F 6 HOH A 54 555 54 HOH HOH . F 6 HOH A 55 556 55 HOH HOH . F 6 HOH A 56 557 56 HOH HOH . F 6 HOH A 57 558 57 HOH HOH . F 6 HOH A 58 559 58 HOH HOH . F 6 HOH A 59 560 59 HOH HOH . F 6 HOH A 60 561 60 HOH HOH . F 6 HOH A 61 562 61 HOH HOH . F 6 HOH A 62 563 62 HOH HOH . F 6 HOH A 63 564 63 HOH HOH . F 6 HOH A 64 565 65 HOH HOH . F 6 HOH A 65 566 66 HOH HOH . F 6 HOH A 66 567 67 HOH HOH . F 6 HOH A 67 568 68 HOH HOH . F 6 HOH A 68 569 69 HOH HOH . F 6 HOH A 69 570 70 HOH HOH . F 6 HOH A 70 571 71 HOH HOH . F 6 HOH A 71 572 72 HOH HOH . F 6 HOH A 72 573 73 HOH HOH . F 6 HOH A 73 574 74 HOH HOH . F 6 HOH A 74 575 75 HOH HOH . F 6 HOH A 75 576 76 HOH HOH . F 6 HOH A 76 577 77 HOH HOH . F 6 HOH A 77 578 78 HOH HOH . F 6 HOH A 78 579 79 HOH HOH . F 6 HOH A 79 580 80 HOH HOH . F 6 HOH A 80 581 81 HOH HOH . F 6 HOH A 81 582 82 HOH HOH . F 6 HOH A 82 583 83 HOH HOH . F 6 HOH A 83 584 84 HOH HOH . F 6 HOH A 84 585 85 HOH HOH . F 6 HOH A 85 586 86 HOH HOH . F 6 HOH A 86 587 87 HOH HOH . F 6 HOH A 87 588 88 HOH HOH . F 6 HOH A 88 589 89 HOH HOH . F 6 HOH A 89 590 90 HOH HOH . F 6 HOH A 90 591 91 HOH HOH . F 6 HOH A 91 592 92 HOH HOH . F 6 HOH A 92 593 93 HOH HOH . F 6 HOH A 93 594 94 HOH HOH . F 6 HOH A 94 595 95 HOH HOH . F 6 HOH A 95 596 96 HOH HOH . F 6 HOH A 96 597 97 HOH HOH . F 6 HOH A 97 598 98 HOH HOH . F 6 HOH A 98 599 99 HOH HOH . F 6 HOH A 99 600 100 HOH HOH . F 6 HOH A 100 601 101 HOH HOH . F 6 HOH A 101 602 102 HOH HOH . F 6 HOH A 102 603 103 HOH HOH . F 6 HOH A 103 604 104 HOH HOH . F 6 HOH A 104 605 105 HOH HOH . F 6 HOH A 105 606 106 HOH HOH . F 6 HOH A 106 607 107 HOH HOH . F 6 HOH A 107 608 108 HOH HOH . F 6 HOH A 108 609 109 HOH HOH . F 6 HOH A 109 610 110 HOH HOH . F 6 HOH A 110 611 111 HOH HOH . F 6 HOH A 111 612 112 HOH HOH . F 6 HOH A 112 613 113 HOH HOH . F 6 HOH A 113 614 114 HOH HOH . F 6 HOH A 114 615 115 HOH HOH . F 6 HOH A 115 616 116 HOH HOH . F 6 HOH A 116 617 117 HOH HOH . F 6 HOH A 117 618 118 HOH HOH . F 6 HOH A 118 619 119 HOH HOH . F 6 HOH A 119 620 120 HOH HOH . F 6 HOH A 120 621 121 HOH HOH . F 6 HOH A 121 622 122 HOH HOH . F 6 HOH A 122 623 123 HOH HOH . F 6 HOH A 123 624 124 HOH HOH . F 6 HOH A 124 625 125 HOH HOH . F 6 HOH A 125 626 126 HOH HOH . F 6 HOH A 126 627 127 HOH HOH . F 6 HOH A 127 628 128 HOH HOH . F 6 HOH A 128 629 129 HOH HOH . F 6 HOH A 129 630 130 HOH HOH . F 6 HOH A 130 631 131 HOH HOH . F 6 HOH A 131 632 132 HOH HOH . F 6 HOH A 132 633 133 HOH HOH . F 6 HOH A 133 634 134 HOH HOH . F 6 HOH A 134 635 135 HOH HOH . F 6 HOH A 135 636 136 HOH HOH . F 6 HOH A 136 637 137 HOH HOH . F 6 HOH A 137 638 138 HOH HOH . F 6 HOH A 138 639 139 HOH HOH . F 6 HOH A 139 640 140 HOH HOH . F 6 HOH A 140 641 141 HOH HOH . F 6 HOH A 141 642 142 HOH HOH . F 6 HOH A 142 643 143 HOH HOH . F 6 HOH A 143 644 144 HOH HOH . F 6 HOH A 144 645 145 HOH HOH . F 6 HOH A 145 646 146 HOH HOH . F 6 HOH A 146 647 147 HOH HOH . F 6 HOH A 147 648 148 HOH HOH . F 6 HOH A 148 649 149 HOH HOH . F 6 HOH A 149 650 150 HOH HOH . F 6 HOH A 150 651 151 HOH HOH . F 6 HOH A 151 652 152 HOH HOH . F 6 HOH A 152 653 153 HOH HOH . F 6 HOH A 153 654 154 HOH HOH . F 6 HOH A 154 655 155 HOH HOH . F 6 HOH A 155 656 156 HOH HOH . F 6 HOH A 156 657 157 HOH HOH . F 6 HOH A 157 658 158 HOH HOH . F 6 HOH A 158 659 159 HOH HOH . F 6 HOH A 159 660 160 HOH HOH . F 6 HOH A 160 661 161 HOH HOH . F 6 HOH A 161 662 162 HOH HOH . F 6 HOH A 162 663 163 HOH HOH . F 6 HOH A 163 664 164 HOH HOH . F 6 HOH A 164 665 165 HOH HOH . F 6 HOH A 165 666 166 HOH HOH . F 6 HOH A 166 667 167 HOH HOH . F 6 HOH A 167 668 168 HOH HOH . F 6 HOH A 168 669 169 HOH HOH . F 6 HOH A 169 670 170 HOH HOH . F 6 HOH A 170 671 171 HOH HOH . F 6 HOH A 171 672 172 HOH HOH . F 6 HOH A 172 673 173 HOH HOH . F 6 HOH A 173 674 174 HOH HOH . F 6 HOH A 174 675 175 HOH HOH . F 6 HOH A 175 676 176 HOH HOH . F 6 HOH A 176 677 177 HOH HOH . F 6 HOH A 177 678 178 HOH HOH . F 6 HOH A 178 679 179 HOH HOH . F 6 HOH A 179 680 180 HOH HOH . F 6 HOH A 180 681 181 HOH HOH . F 6 HOH A 181 682 182 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 9.985 _atom_site.Cartn_y 6.337 _atom_site.Cartn_z 48.106 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 498 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #