data_3BBP
#
_model_server_result.job_id            -Rx5VL-ra-20-imnKUldcQ 
_model_server_result.datetime_utc      '2024-11-04 23:13:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bbp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":500}' 
#
_entry.id    3BBP 
#
_exptl.entry_id    3BBP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3BBP 
_cell.length_a            168.599 
_cell.length_b            168.599 
_cell.length_c            168.955 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
PISA monomeric 1 software_defined_assembly 5 
PISA monomeric 1 software_defined_assembly 6 
PISA monomeric 1 software_defined_assembly 7 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,G,H,I,J 1 1 
C,F,K,L 2 1,2 
D,E 3 1 
A,G,H 4 1 
B,I,J 5 1 
C,K,L 6 1 
F 7 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 168.599 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 J N N 
? 4 L N N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     3BBP 
_atom_sites.fract_transf_matrix[1][1]    0.005931 
_atom_sites.fract_transf_matrix[1][2]    0.003424 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006849 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 MG A 1 501 501 MG MG2 . 
H 4 GTP A 1 500 500 GTP GTP . 
I 3 MG B 1 501 501 MG MG2 . 
J 4 GTP B 1 500 500 GTP GTP . 
K 3 MG C 1 501 501 MG MG2 . 
L 4 GTP C 1 500 500 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . H 4 67.993 -17.555 11.957 1 87.5 ? PG GTP 500 A 1 
HETATM 2 O O1G GTP . . . H 4 66.617 -18.155 12.004 1 39.69 ? O1G GTP 500 A 1 
HETATM 3 O O2G GTP . . . H 4 68.972 -18.7 11.856 1 89.31 ? O2G GTP 500 A 1 
HETATM 4 O O3G GTP . . . H 4 68.252 -16.702 13.186 1 61.11 ? O3G GTP 500 A 1 
HETATM 5 O O3B GTP . . . H 4 68.057 -16.597 10.665 1 76.56 ? O3B GTP 500 A 1 
HETATM 6 P PB GTP . . . H 4 67.209 -15.225 10.693 1 68.84 ? PB GTP 500 A 1 
HETATM 7 O O1B GTP . . . H 4 65.882 -15.426 10.007 1 83.34 ? O1B GTP 500 A 1 
HETATM 8 O O2B GTP . . . H 4 67.016 -14.798 12.122 1 66.13 ? O2B GTP 500 A 1 
HETATM 9 O O3A GTP . . . H 4 68.045 -14.074 9.936 1 48.44 ? O3A GTP 500 A 1 
HETATM 10 P PA GTP . . . H 4 69.389 -13.386 10.51 1 75.06 ? PA GTP 500 A 1 
HETATM 11 O O1A GTP . . . H 4 69.035 -11.941 10.735 1 27.65 ? O1A GTP 500 A 1 
HETATM 12 O O2A GTP . . . H 4 69.916 -14.047 11.767 1 69.94 ? O2A GTP 500 A 1 
HETATM 13 O O5' GTP . . . H 4 70.461 -13.451 9.316 1 70.29 ? O5' GTP 500 A 1 
HETATM 14 C C5' GTP . . . H 4 70.094 -12.997 8.034 1 50.77 ? C5' GTP 500 A 1 
HETATM 15 C C4' GTP . . . H 4 71.339 -12.743 7.2 1 59.71 ? C4' GTP 500 A 1 
HETATM 16 O O4' GTP . . . H 4 70.95 -11.907 6.135 1 95.58 ? O4' GTP 500 A 1 
HETATM 17 C C3' GTP . . . H 4 72.366 -11.97 7.996 1 91.99 ? C3' GTP 500 A 1 
HETATM 18 O O3' GTP . . . H 4 73.628 -12.3 7.47 1 61.12 ? O3' GTP 500 A 1 
HETATM 19 C C2' GTP . . . H 4 72.056 -10.529 7.673 1 59.81 ? C2' GTP 500 A 1 
HETATM 20 O O2' GTP . . . H 4 73.216 -9.735 7.723 1 98.8 ? O2' GTP 500 A 1 
HETATM 21 C C1' GTP . . . H 4 71.46 -10.595 6.278 1 72.08 ? C1' GTP 500 A 1 
HETATM 22 N N9 GTP . . . H 4 70.34 -9.641 6.179 1 86.63 ? N9 GTP 500 A 1 
HETATM 23 C C8 GTP . . . H 4 69.271 -9.523 7.032 1 63.33 ? C8 GTP 500 A 1 
HETATM 24 N N7 GTP . . . H 4 68.459 -8.548 6.566 1 68.21 ? N7 GTP 500 A 1 
HETATM 25 C C5 GTP . . . H 4 68.976 -8.06 5.413 1 92.5 ? C5 GTP 500 A 1 
HETATM 26 C C6 GTP . . . H 4 68.56 -7.074 4.524 1 92.98 ? C6 GTP 500 A 1 
HETATM 27 O O6 GTP . . . H 4 67.522 -6.443 4.716 1 64.23 ? O6 GTP 500 A 1 
HETATM 28 N N1 GTP . . . H 4 69.318 -6.799 3.409 1 92.21 ? N1 GTP 500 A 1 
HETATM 29 C C2 GTP . . . H 4 70.481 -7.495 3.176 1 73.94 ? C2 GTP 500 A 1 
HETATM 30 N N2 GTP . . . H 4 71.216 -7.228 2.1 1 82.7 ? N2 GTP 500 A 1 
HETATM 31 N N3 GTP . . . H 4 70.886 -8.467 4.06 1 71.75 ? N3 GTP 500 A 1 
HETATM 32 C C4 GTP . . . H 4 70.151 -8.747 5.158 1 69.5 ? C4 GTP 500 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#