data_3BCC # _model_server_result.job_id fVHYqA6PpIIc4zsWX2n74g _model_server_result.datetime_utc '2024-11-04 22:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":242}' # _entry.id 3BCC # _exptl.entry_id 3BCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BCC _cell.length_a 173.18 _cell.length_b 179.73 _cell.length_c 238.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 20-MERIC _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details 'complete point assembly' _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression (1-2) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.8231 -0.567885 0.003686 -0.567882 0.823108 0.001808 -0.004061 -0.000605 -0.999992 129.585 40.2988 170.1276 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 K N N ? 11 L N N ? 11 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 O CAB HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 O CAC HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 P FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 P FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 P FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 P FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 210 n n CHA C4D HEM doub 211 n n CHA HHA HEM sing 212 n n CHB C4A HEM sing 213 n n CHB C1B HEM doub 214 n n CHB HHB HEM sing 215 n n CHC C4B HEM sing 216 n n CHC C1C HEM doub 217 n n CHC HHC HEM sing 218 n n CHD C4C HEM doub 219 n n CHD C1D HEM sing 220 n n CHD HHD HEM sing 221 n n C1A C2A HEM doub 222 n y C1A NA HEM sing 223 n y C2A C3A HEM sing 224 n y C2A CAA HEM sing 225 n n C3A C4A HEM doub 226 n y C3A CMA HEM sing 227 n n C4A NA HEM sing 228 n y CMA HMA HEM sing 229 n n CMA HMAA HEM sing 230 n n CMA HMAB HEM sing 231 n n CAA CBA HEM sing 232 n n CAA HAA HEM sing 233 n n CAA HAAA HEM sing 234 n n CBA CGA HEM sing 235 n n CBA HBA HEM sing 236 n n CBA HBAA HEM sing 237 n n CGA O1A HEM doub 238 n n CGA O2A HEM sing 239 n n C1B C2B HEM sing 240 n n C1B NB HEM sing 241 n n C2B C3B HEM doub 242 n n C2B CMB HEM sing 243 n n C3B C4B HEM sing 244 n n C3B CAB HEM sing 245 n n C4B NB HEM doub 246 n n CMB HMB HEM sing 247 n n CMB HMBA HEM sing 248 n n CMB HMBB HEM sing 249 n n CAB CBB HEM doub 250 n n CAB HAB HEM sing 251 n n CBB HBB HEM sing 252 n n CBB HBBA HEM sing 253 n n C1C C2C HEM sing 254 n y C1C NC HEM sing 255 n y C2C C3C HEM doub 256 n y C2C CMC HEM sing 257 n n C3C C4C HEM sing 258 n y C3C CAC HEM sing 259 n n C4C NC HEM sing 260 n y CMC HMC HEM sing 261 n n CMC HMCA HEM sing 262 n n CMC HMCB HEM sing 263 n n CAC CBC HEM doub 264 n n CAC HAC HEM sing 265 n n CBC HBC HEM sing 266 n n CBC HBCA HEM sing 267 n n C1D C2D HEM sing 268 n n C1D ND HEM doub 269 n n C2D C3D HEM doub 270 n n C2D CMD HEM sing 271 n n C3D C4D HEM sing 272 n n C3D CAD HEM sing 273 n n C4D ND HEM sing 274 n n CMD HMD HEM sing 275 n n CMD HMDA HEM sing 276 n n CMD HMDB HEM sing 277 n n CAD CBD HEM sing 278 n n CAD HAD HEM sing 279 n n CAD HADA HEM sing 280 n n CBD CGD HEM sing 281 n n CBD HBD HEM sing 282 n n CBD HBDA HEM sing 283 n n CGD O1D HEM doub 284 n n CGD O2D HEM sing 285 n n O2A H2A HEM sing 286 n n O2D H2D HEM sing 287 n n FE NA HEM sing 288 n n FE NB HEM sing 289 n n FE NC HEM sing 290 n n FE ND HEM sing 291 n n # _atom_sites.entry_id 3BCC _atom_sites.fract_transf_matrix[1][1] 0.005774 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 HEM C 1 381 1 HEM HEM . L 11 HEM C 1 382 2 HEM HEM . M 12 SIG C 1 383 5 SIG SIG . N 13 AMY C 1 384 6 AMY AMY . O 11 HEM D 1 242 3 HEM HEM . P 14 FES E 1 197 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . O 11 2.717 155.731 67.135 1 40.46 ? CHA HEM 242 D 1 HETATM 2 C CHB HEM . . . O 11 4.793 155.598 62.98 1 35.33 ? CHB HEM 242 D 1 HETATM 3 C CHC HEM . . . O 11 5.22 160.302 62.855 1 39.81 ? CHC HEM 242 D 1 HETATM 4 C CHD HEM . . . O 11 2.84 160.41 67.011 1 42.37 ? CHD HEM 242 D 1 HETATM 5 C C1A HEM . . . O 11 3.364 155.28 66.052 1 37.44 ? C1A HEM 242 D 1 HETATM 6 C C2A HEM . . . O 11 3.402 153.886 65.695 1 35.67 ? C2A HEM 242 D 1 HETATM 7 C C3A HEM . . . O 11 4.091 153.838 64.594 1 35.25 ? C3A HEM 242 D 1 HETATM 8 C C4A HEM . . . O 11 4.271 155.213 64.17 1 36.5 ? C4A HEM 242 D 1 HETATM 9 C CMA HEM . . . O 11 4.405 152.594 63.831 1 34.23 ? CMA HEM 242 D 1 HETATM 10 C CAA HEM . . . O 11 2.459 152.885 66.33 1 39.24 ? CAA HEM 242 D 1 HETATM 11 C CBA HEM . . . O 11 2.589 151.399 66.482 1 40.27 ? CBA HEM 242 D 1 HETATM 12 C CGA HEM . . . O 11 1.626 150.869 67.526 1 45.51 ? CGA HEM 242 D 1 HETATM 13 O O1A HEM . . . O 11 1.584 151.446 68.635 1 46.67 ? O1A HEM 242 D 1 HETATM 14 O O2A HEM . . . O 11 0.928 149.878 67.254 1 46.69 ? O2A HEM 242 D 1 HETATM 15 C C1B HEM . . . O 11 5.035 156.874 62.569 1 39.49 ? C1B HEM 242 D 1 HETATM 16 C C2B HEM . . . O 11 5.957 157.164 61.494 1 41.89 ? C2B HEM 242 D 1 HETATM 17 C C3B HEM . . . O 11 6.092 158.449 61.429 1 40.91 ? C3B HEM 242 D 1 HETATM 18 C C4B HEM . . . O 11 5.269 159.006 62.471 1 39.03 ? C4B HEM 242 D 1 HETATM 19 C CMB HEM . . . O 11 6.729 156.195 60.609 1 40.64 ? CMB HEM 242 D 1 HETATM 20 C CAB HEM . . . O 11 6.985 159.305 60.561 1 42.52 ? CAB HEM 242 D 1 HETATM 21 C CBB HEM . . . O 11 6.964 158.766 59.136 1 38.94 ? CBB HEM 242 D 1 HETATM 22 C C1C HEM . . . O 11 4.596 160.753 63.996 1 43.48 ? C1C HEM 242 D 1 HETATM 23 C C2C HEM . . . O 11 4.504 162.15 64.392 1 42.94 ? C2C HEM 242 D 1 HETATM 24 C C3C HEM . . . O 11 3.823 162.197 65.51 1 44.56 ? C3C HEM 242 D 1 HETATM 25 C C4C HEM . . . O 11 3.476 160.811 65.851 1 44.45 ? C4C HEM 242 D 1 HETATM 26 C CMC HEM . . . O 11 5.04 163.402 63.766 1 40.93 ? CMC HEM 242 D 1 HETATM 27 C CAC HEM . . . O 11 3.582 163.36 66.457 1 49.1 ? CAC HEM 242 D 1 HETATM 28 C CBC HEM . . . O 11 2.744 164.376 65.694 1 56 ? CBC HEM 242 D 1 HETATM 29 C C1D HEM . . . O 11 2.591 159.122 67.413 1 40.38 ? C1D HEM 242 D 1 HETATM 30 C C2D HEM . . . O 11 1.772 158.729 68.561 1 42.54 ? C2D HEM 242 D 1 HETATM 31 C C3D HEM . . . O 11 1.602 157.404 68.551 1 41.77 ? C3D HEM 242 D 1 HETATM 32 C C4D HEM . . . O 11 2.432 157.01 67.422 1 40.29 ? C4D HEM 242 D 1 HETATM 33 C CMD HEM . . . O 11 1.145 159.608 69.634 1 49.33 ? CMD HEM 242 D 1 HETATM 34 C CAD HEM . . . O 11 0.727 156.656 69.609 1 41.96 ? CAD HEM 242 D 1 HETATM 35 C CBD HEM . . . O 11 -0.157 155.443 69.284 1 51.76 ? CBD HEM 242 D 1 HETATM 36 C CGD HEM . . . O 11 -1.13 155.064 70.418 1 57.23 ? CGD HEM 242 D 1 HETATM 37 O O1D HEM . . . O 11 -0.664 154.716 71.53 1 61.47 ? O1D HEM 242 D 1 HETATM 38 O O2D HEM . . . O 11 -2.367 155.114 70.198 1 53.92 ? O2D HEM 242 D 1 HETATM 39 N NA HEM . . . O 11 3.824 156.108 65.095 1 39.22 ? NA HEM 242 D 1 HETATM 40 N NB HEM . . . O 11 4.689 158.009 63.243 1 38.96 ? NB HEM 242 D 1 HETATM 41 N NC HEM . . . O 11 3.967 159.922 64.914 1 42.76 ? NC HEM 242 D 1 HETATM 42 N ND HEM . . . O 11 2.941 158.051 66.676 1 39.61 ? ND HEM 242 D 1 HETATM 43 FE FE HEM . . . O 11 3.829 158.053 65 1 40.54 ? FE HEM 242 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #