data_3BCC
#
_model_server_result.job_id            swC-rQwC7h44HfZwqRjOAQ 
_model_server_result.datetime_utc      '2025-04-27 09:30:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bcc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":381}' 
#
_entry.id    3BCC 
#
_exptl.entry_id    3BCC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BCC 
_cell.length_a            173.18 
_cell.length_b            179.73 
_cell.length_c            238.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BCC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    20-MERIC 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               'complete point assembly' 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    (1-2) 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -0.8231 -0.567885 0.003686 -0.567882 0.823108 0.001808 -0.004061 -0.000605 -0.999992 129.585 40.2988 170.1276 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 K N N 
? 11 L N N 
? 11 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 D SG CYS 37 D CYS 37 1_555 O CAB HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? 
covale ? covale2 D SG CYS 40 D CYS 40 1_555 O CAC HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 P FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 P FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 P FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 P FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 210 n n 
CHA C4D HEM doub 211 n n 
CHA HHA HEM sing 212 n n 
CHB C4A HEM sing 213 n n 
CHB C1B HEM doub 214 n n 
CHB HHB HEM sing 215 n n 
CHC C4B HEM sing 216 n n 
CHC C1C HEM doub 217 n n 
CHC HHC HEM sing 218 n n 
CHD C4C HEM doub 219 n n 
CHD C1D HEM sing 220 n n 
CHD HHD HEM sing 221 n n 
C1A C2A HEM doub 222 n y 
C1A NA HEM sing 223 n y 
C2A C3A HEM sing 224 n y 
C2A CAA HEM sing 225 n n 
C3A C4A HEM doub 226 n y 
C3A CMA HEM sing 227 n n 
C4A NA HEM sing 228 n y 
CMA HMA HEM sing 229 n n 
CMA HMAA HEM sing 230 n n 
CMA HMAB HEM sing 231 n n 
CAA CBA HEM sing 232 n n 
CAA HAA HEM sing 233 n n 
CAA HAAA HEM sing 234 n n 
CBA CGA HEM sing 235 n n 
CBA HBA HEM sing 236 n n 
CBA HBAA HEM sing 237 n n 
CGA O1A HEM doub 238 n n 
CGA O2A HEM sing 239 n n 
C1B C2B HEM sing 240 n n 
C1B NB HEM sing 241 n n 
C2B C3B HEM doub 242 n n 
C2B CMB HEM sing 243 n n 
C3B C4B HEM sing 244 n n 
C3B CAB HEM sing 245 n n 
C4B NB HEM doub 246 n n 
CMB HMB HEM sing 247 n n 
CMB HMBA HEM sing 248 n n 
CMB HMBB HEM sing 249 n n 
CAB CBB HEM doub 250 n n 
CAB HAB HEM sing 251 n n 
CBB HBB HEM sing 252 n n 
CBB HBBA HEM sing 253 n n 
C1C C2C HEM sing 254 n y 
C1C NC HEM sing 255 n y 
C2C C3C HEM doub 256 n y 
C2C CMC HEM sing 257 n n 
C3C C4C HEM sing 258 n y 
C3C CAC HEM sing 259 n n 
C4C NC HEM sing 260 n y 
CMC HMC HEM sing 261 n n 
CMC HMCA HEM sing 262 n n 
CMC HMCB HEM sing 263 n n 
CAC CBC HEM doub 264 n n 
CAC HAC HEM sing 265 n n 
CBC HBC HEM sing 266 n n 
CBC HBCA HEM sing 267 n n 
C1D C2D HEM sing 268 n n 
C1D ND HEM doub 269 n n 
C2D C3D HEM doub 270 n n 
C2D CMD HEM sing 271 n n 
C3D C4D HEM sing 272 n n 
C3D CAD HEM sing 273 n n 
C4D ND HEM sing 274 n n 
CMD HMD HEM sing 275 n n 
CMD HMDA HEM sing 276 n n 
CMD HMDB HEM sing 277 n n 
CAD CBD HEM sing 278 n n 
CAD HAD HEM sing 279 n n 
CAD HADA HEM sing 280 n n 
CBD CGD HEM sing 281 n n 
CBD HBD HEM sing 282 n n 
CBD HBDA HEM sing 283 n n 
CGD O1D HEM doub 284 n n 
CGD O2D HEM sing 285 n n 
O2A H2A HEM sing 286 n n 
O2D H2D HEM sing 287 n n 
FE NA HEM sing 288 n n 
FE NB HEM sing 289 n n 
FE NC HEM sing 290 n n 
FE ND HEM sing 291 n n 
#
_atom_sites.entry_id                     3BCC 
_atom_sites.fract_transf_matrix[1][1]    0.005774 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005564 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004198 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 HEM C 1 381 1 HEM HEM . 
L 11 HEM C 1 382 2 HEM HEM . 
M 12 SIG C 1 383 5 SIG SIG . 
N 13 AMY C 1 384 6 AMY AMY . 
O 11 HEM D 1 242 3 HEM HEM . 
P 14 FES E 1 197 4 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 11 20.71 135.364 76.711 1 37.94 ? CHA HEM 381 C 1 
HETATM 2 C CHB HEM . . . K 11 19.761 130.811 76.267 1 32.61 ? CHB HEM 381 C 1 
HETATM 3 C CHC HEM . . . K 11 24.067 129.911 77.614 1 41.03 ? CHC HEM 381 C 1 
HETATM 4 C CHD HEM . . . K 11 24.971 134.522 78.244 1 34.91 ? CHD HEM 381 C 1 
HETATM 5 C C1A HEM . . . K 11 20.141 134.155 76.517 1 34.54 ? C1A HEM 381 C 1 
HETATM 6 C C2A HEM . . . K 11 18.782 134.092 76.068 1 33.64 ? C2A HEM 381 C 1 
HETATM 7 C C3A HEM . . . K 11 18.573 132.815 75.868 1 32.08 ? C3A HEM 381 C 1 
HETATM 8 C C4A HEM . . . K 11 19.745 132.145 76.283 1 30.56 ? C4A HEM 381 C 1 
HETATM 9 C CMA HEM . . . K 11 17.398 132.209 75.14 1 38.71 ? CMA HEM 381 C 1 
HETATM 10 C CAA HEM . . . K 11 17.871 135.206 75.589 1 33.28 ? CAA HEM 381 C 1 
HETATM 11 C CBA HEM . . . K 11 18.272 135.554 74.165 1 31.54 ? CBA HEM 381 C 1 
HETATM 12 C CGA HEM . . . K 11 17.252 136.424 73.467 1 31.08 ? CGA HEM 381 C 1 
HETATM 13 O O1A HEM . . . K 11 17.039 137.582 73.877 1 24.54 ? O1A HEM 381 C 1 
HETATM 14 O O2A HEM . . . K 11 16.645 135.932 72.502 1 36.89 ? O2A HEM 381 C 1 
HETATM 15 C C1B HEM . . . K 11 20.861 130.177 76.651 1 34.32 ? C1B HEM 381 C 1 
HETATM 16 C C2B HEM . . . K 11 20.896 128.75 76.856 1 34.76 ? C2B HEM 381 C 1 
HETATM 17 C C3B HEM . . . K 11 22.143 128.487 76.978 1 37.37 ? C3B HEM 381 C 1 
HETATM 18 C C4B HEM . . . K 11 22.78 129.777 77.244 1 36.33 ? C4B HEM 381 C 1 
HETATM 19 C CMB HEM . . . K 11 19.809 127.711 76.872 1 30.72 ? CMB HEM 381 C 1 
HETATM 20 C CAB HEM . . . K 11 22.638 127.223 76.854 1 39.72 ? CAB HEM 381 C 1 
HETATM 21 C CBB HEM . . . K 11 22.778 126.434 77.954 1 44.91 ? CBB HEM 381 C 1 
HETATM 22 C C1C HEM . . . K 11 24.709 131.11 77.767 1 42.11 ? C1C HEM 381 C 1 
HETATM 23 C C2C HEM . . . K 11 26.092 131.178 78.276 1 42.85 ? C2C HEM 381 C 1 
HETATM 24 C C3C HEM . . . K 11 26.304 132.48 78.593 1 42.44 ? C3C HEM 381 C 1 
HETATM 25 C C4C HEM . . . K 11 25.091 133.181 78.133 1 39.3 ? C4C HEM 381 C 1 
HETATM 26 C CMC HEM . . . K 11 27.068 130.022 78.559 1 39.39 ? CMC HEM 381 C 1 
HETATM 27 C CAC HEM . . . K 11 27.422 132.996 79.239 1 41.86 ? CAC HEM 381 C 1 
HETATM 28 C CBC HEM . . . K 11 27.817 132.471 80.452 1 41.11 ? CBC HEM 381 C 1 
HETATM 29 C C1D HEM . . . K 11 23.876 135.125 77.759 1 34.53 ? C1D HEM 381 C 1 
HETATM 30 C C2D HEM . . . K 11 23.819 136.549 77.527 1 37.25 ? C2D HEM 381 C 1 
HETATM 31 C C3D HEM . . . K 11 22.578 136.822 77.235 1 35.15 ? C3D HEM 381 C 1 
HETATM 32 C C4D HEM . . . K 11 21.977 135.518 77.067 1 35.07 ? C4D HEM 381 C 1 
HETATM 33 C CMD HEM . . . K 11 24.94 137.565 77.45 1 41.46 ? CMD HEM 381 C 1 
HETATM 34 C CAD HEM . . . K 11 22.067 138.254 77.106 1 32.12 ? CAD HEM 381 C 1 
HETATM 35 C CBD HEM . . . K 11 21.967 138.904 75.742 1 24.79 ? CBD HEM 381 C 1 
HETATM 36 C CGD HEM . . . K 11 20.849 138.337 74.938 1 22.95 ? CGD HEM 381 C 1 
HETATM 37 O O1D HEM . . . K 11 19.723 138.418 75.425 1 33.29 ? O1D HEM 381 C 1 
HETATM 38 O O2D HEM . . . K 11 21.07 137.813 73.834 1 27.05 ? O2D HEM 381 C 1 
HETATM 39 N NA HEM . . . K 11 20.784 132.946 76.665 1 31.84 ? NA HEM 381 C 1 
HETATM 40 N NB HEM . . . K 11 21.999 130.88 77.029 1 31.17 ? NB HEM 381 C 1 
HETATM 41 N NC HEM . . . K 11 24.06 132.343 77.589 1 37.52 ? NC HEM 381 C 1 
HETATM 42 N ND HEM . . . K 11 22.773 134.424 77.302 1 33.23 ? ND HEM 381 C 1 
HETATM 43 FE FE HEM . . . K 11 22.344 132.6 77.095 1 28.64 ? FE HEM 381 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#