data_3BCC # _model_server_result.job_id i9UREacVHDvvuGD4Ihn-Qg _model_server_result.datetime_utc '2025-04-20 01:24:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":384}' # _entry.id 3BCC # _exptl.entry_id 3BCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 534.599 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ANTIMYCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BCC _cell.length_a 173.18 _cell.length_b 179.73 _cell.length_c 238.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 20-MERIC _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details 'complete point assembly' _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression (1-2) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.8231 -0.567885 0.003686 -0.567882 0.823108 0.001808 -0.004061 -0.000605 -0.999992 129.585 40.2988 170.1276 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 O CAB HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 O CAC HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 P FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 P FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 P FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 P FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C27 H38 N2 O9' _chem_comp.formula_weight 534.599 _chem_comp.id AMY _chem_comp.mon_nstd_flag . _chem_comp.name ANTIMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AMY doub 13 n y C1 C6 AMY sing 14 n y C1 O1 AMY sing 15 n n C2 C3 AMY sing 16 n y C2 N1 AMY sing 17 n n C3 C4 AMY doub 18 n y C3 H3 AMY sing 19 n n C5 C6 AMY doub 20 n y C5 C4 AMY sing 21 n y C5 H5 AMY sing 22 n n O5 C14 AMY sing 23 n n O5 C10 AMY sing 24 n n C6 C7 AMY sing 25 n n C7 N2 AMY sing 26 n n C7 O3 AMY doub 27 n n C8 N1 AMY sing 28 n n C8 O2 AMY doub 29 n n C8 H8 AMY sing 30 n n C9 N2 AMY sing 31 n n C9 C10 AMY sing 32 n n C9 C20 AMY sing 33 n n C9 H9 AMY sing 34 n n O9 C21 AMY doub 35 n n C11 C12 AMY sing 36 n n C11 O4 AMY sing 37 n n C11 C27 AMY sing 38 n n C11 H11 AMY sing 39 n n C12 C13 AMY sing 40 n n C12 O8 AMY sing 41 n n C12 H12 AMY sing 42 n n C13 C14 AMY sing 43 n n C13 C15 AMY sing 44 n n C13 H13 AMY sing 45 n n C14 O6 AMY doub 46 n n C4 H4 AMY sing 47 n n N1 HN1 AMY sing 48 n n N2 HN2 AMY sing 49 n n O1 HO1 AMY sing 50 n n C10 C26 AMY sing 51 n n C10 H10 AMY sing 52 n n O4 C20 AMY sing 53 n n C15 C16 AMY sing 54 n n C15 H151 AMY sing 55 n n C15 H152 AMY sing 56 n n C16 C17 AMY sing 57 n n C16 H161 AMY sing 58 n n C16 H162 AMY sing 59 n n C17 C18 AMY sing 60 n n C17 H171 AMY sing 61 n n C17 H172 AMY sing 62 n n C18 C19 AMY sing 63 n n C18 H181 AMY sing 64 n n C18 H182 AMY sing 65 n n C19 H191 AMY sing 66 n n C19 H192 AMY sing 67 n n C19 H193 AMY sing 68 n n C20 O7 AMY doub 69 n n O8 C21 AMY sing 70 n n C21 C22 AMY sing 71 n n C22 C23 AMY sing 72 n n C22 H221 AMY sing 73 n n C22 H222 AMY sing 74 n n C23 C24 AMY sing 75 n n C23 C25 AMY sing 76 n n C23 H23 AMY sing 77 n n C24 H241 AMY sing 78 n n C24 H242 AMY sing 79 n n C24 H243 AMY sing 80 n n C25 H251 AMY sing 81 n n C25 H252 AMY sing 82 n n C25 H253 AMY sing 83 n n C26 H261 AMY sing 84 n n C26 H262 AMY sing 85 n n C26 H263 AMY sing 86 n n C27 H271 AMY sing 87 n n C27 H272 AMY sing 88 n n C27 H273 AMY sing 89 n n # _atom_sites.entry_id 3BCC _atom_sites.fract_transf_matrix[1][1] 0.005774 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 HEM C 1 381 1 HEM HEM . L 11 HEM C 1 382 2 HEM HEM . M 12 SIG C 1 383 5 SIG SIG . N 13 AMY C 1 384 6 AMY AMY . O 11 HEM D 1 242 3 HEM HEM . P 14 FES E 1 197 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AMY . . . N 13 27.851 109.936 69.283 1 25.9 ? C1 AMY 384 C 1 HETATM 2 C C2 AMY . . . N 13 27.069 109.06 68.496 1 20.83 ? C2 AMY 384 C 1 HETATM 3 C C3 AMY . . . N 13 26.622 107.814 69.017 1 16.19 ? C3 AMY 384 C 1 HETATM 4 C C5 AMY . . . N 13 27.782 108.356 71.185 1 24.56 ? C5 AMY 384 C 1 HETATM 5 O O5 AMY . . . N 13 32.124 113.238 72.331 1 31.17 ? O5 AMY 384 C 1 HETATM 6 C C6 AMY . . . N 13 28.232 109.597 70.658 1 29.04 ? C6 AMY 384 C 1 HETATM 7 C C7 AMY . . . N 13 29.083 110.495 71.509 1 34.7 ? C7 AMY 384 C 1 HETATM 8 C C8 AMY . . . N 13 25.624 109.221 66.638 1 31.18 ? C8 AMY 384 C 1 HETATM 9 C C9 AMY . . . N 13 29.521 112.628 72.528 1 30.41 ? C9 AMY 384 C 1 HETATM 10 O O9 AMY . . . N 13 30.786 116.755 77.498 1 15.96 ? O9 AMY 384 C 1 HETATM 11 C C11 AMY . . . N 13 29.933 114.695 74.604 1 40.08 ? C11 AMY 384 C 1 HETATM 12 C C12 AMY . . . N 13 31.313 115.176 75.225 1 39.24 ? C12 AMY 384 C 1 HETATM 13 C C13 AMY . . . N 13 32.486 114.826 74.208 1 40.5 ? C13 AMY 384 C 1 HETATM 14 C C14 AMY . . . N 13 32.558 113.332 73.805 1 41.57 ? C14 AMY 384 C 1 HETATM 15 C C4 AMY . . . N 13 26.974 107.464 70.356 1 22.4 ? C4 AMY 384 C 1 HETATM 16 N N1 AMY . . . N 13 26.756 109.449 67.191 1 19.18 ? N1 AMY 384 C 1 HETATM 17 N N2 AMY . . . N 13 28.704 111.745 71.754 1 34.87 ? N2 AMY 384 C 1 HETATM 18 O O1 AMY . . . N 13 28.228 111.083 68.702 1 35.18 ? O1 AMY 384 C 1 HETATM 19 O O2 AMY . . . N 13 25.617 108.767 65.541 1 44.16 ? O2 AMY 384 C 1 HETATM 20 O O3 AMY . . . N 13 30.183 109.979 71.947 1 45.61 ? O3 AMY 384 C 1 HETATM 21 C C10 AMY . . . N 13 30.921 112.446 71.904 1 29.7 ? C10 AMY 384 C 1 HETATM 22 O O4 AMY . . . N 13 29.838 115.016 73.195 1 41.29 ? O4 AMY 384 C 1 HETATM 23 O O6 AMY . . . N 13 31.577 112.522 74.622 1 45.08 ? O6 AMY 384 C 1 HETATM 24 C C15 AMY . . . N 13 33.902 115.256 74.848 1 45.48 ? C15 AMY 384 C 1 HETATM 25 C C16 AMY . . . N 13 35.239 115.021 74.082 1 54.06 ? C16 AMY 384 C 1 HETATM 26 C C17 AMY . . . N 13 36.471 115.573 74.934 1 60.45 ? C17 AMY 384 C 1 HETATM 27 C C18 AMY . . . N 13 36.992 116.959 74.321 1 64.87 ? C18 AMY 384 C 1 HETATM 28 C C19 AMY . . . N 13 38.202 117.573 75.087 1 57.91 ? C19 AMY 384 C 1 HETATM 29 C C20 AMY . . . N 13 29.009 114.07 72.414 1 37.16 ? C20 AMY 384 C 1 HETATM 30 O O7 AMY . . . N 13 27.641 114.128 72.942 1 40.58 ? O7 AMY 384 C 1 HETATM 31 O O8 AMY . . . N 13 31.453 116.617 75.381 1 34.85 ? O8 AMY 384 C 1 HETATM 32 C C21 AMY . . . N 13 30.595 117.289 76.239 1 29.41 ? C21 AMY 384 C 1 HETATM 33 C C22 AMY . . . N 13 31.011 118.744 76.191 1 41.58 ? C22 AMY 384 C 1 HETATM 34 C C23 AMY . . . N 13 30.104 119.643 77.101 1 54.62 ? C23 AMY 384 C 1 HETATM 35 C C24 AMY . . . N 13 30.592 121.072 76.966 1 62.23 ? C24 AMY 384 C 1 HETATM 36 C C25 AMY . . . N 13 30.271 119.279 78.445 1 59.29 ? C25 AMY 384 C 1 HETATM 37 C C26 AMY . . . N 13 31.399 111.16 72.216 1 37.66 ? C26 AMY 384 C 1 HETATM 38 C C27 AMY . . . N 13 28.872 114.989 75.343 1 42.66 ? C27 AMY 384 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 453 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #