data_3BCQ # _model_server_result.job_id 0R53YyszUeND9uHpiPpzfQ _model_server_result.datetime_utc '2024-11-25 18:24:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":143}' # _entry.id 3BCQ # _exptl.entry_id 3BCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.89 _cell.angle_gamma 90 _cell.entry_id 3BCQ _cell.length_a 119.366 _cell.length_b 54.039 _cell.length_c 101.906 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 88 A HIS 88 1_555 E FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 E FE HEM . A HEM 143 1_555 F O1 OXY . A OXY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? metalc ? metalc3 E FE HEM . A HEM 143 1_555 F O2 OXY . A OXY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc5 G FE HEM . B HEM 147 1_555 H O1 OXY . B OXY 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? metalc ? metalc6 G FE HEM . B HEM 147 1_555 H O2 OXY . B OXY 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc7 C NE2 HIS 88 C HIS 88 1_555 I FE HEM . C HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc8 I FE HEM . C HEM 143 1_555 J O1 OXY . C OXY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc9 I FE HEM . C HEM 143 1_555 J O2 OXY . C OXY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc10 D NE2 HIS 92 D HIS 92 1_555 K FE HEM . D HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 K FE HEM . D HEM 147 1_555 L O1 OXY . D OXY 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc12 K FE HEM . D HEM 147 1_555 L O2 OXY . D OXY 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 3BCQ _atom_sites.fract_transf_matrix[1][1] 0.008378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003711 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 143 1 HEM HEM . F 4 OXY A 1 144 1 OXY OXY . G 3 HEM B 1 147 2 HEM HEM . H 4 OXY B 1 148 2 OXY OXY . I 3 HEM C 1 143 3 HEM HEM . J 4 OXY C 1 144 3 OXY OXY . K 3 HEM D 1 147 4 HEM HEM . L 4 OXY D 1 148 4 OXY OXY . M 5 HOH A 1 145 3 HOH HOH . M 5 HOH A 2 146 14 HOH HOH . M 5 HOH A 3 147 15 HOH HOH . M 5 HOH A 4 148 19 HOH HOH . M 5 HOH A 5 149 23 HOH HOH . M 5 HOH A 6 150 24 HOH HOH . M 5 HOH A 7 151 31 HOH HOH . M 5 HOH A 8 152 35 HOH HOH . M 5 HOH A 9 153 40 HOH HOH . M 5 HOH A 10 154 42 HOH HOH . M 5 HOH A 11 155 48 HOH HOH . M 5 HOH A 12 156 52 HOH HOH . M 5 HOH A 13 157 53 HOH HOH . M 5 HOH A 14 158 54 HOH HOH . M 5 HOH A 15 159 55 HOH HOH . M 5 HOH A 16 160 60 HOH HOH . M 5 HOH A 17 161 62 HOH HOH . M 5 HOH A 18 162 63 HOH HOH . M 5 HOH A 19 163 65 HOH HOH . M 5 HOH A 20 164 67 HOH HOH . M 5 HOH A 21 165 70 HOH HOH . M 5 HOH A 22 166 79 HOH HOH . M 5 HOH A 23 167 80 HOH HOH . M 5 HOH A 24 168 81 HOH HOH . M 5 HOH A 25 169 86 HOH HOH . M 5 HOH A 26 170 97 HOH HOH . M 5 HOH A 27 171 112 HOH HOH . M 5 HOH A 28 172 117 HOH HOH . M 5 HOH A 29 173 127 HOH HOH . M 5 HOH A 30 174 133 HOH HOH . M 5 HOH A 31 175 136 HOH HOH . N 5 HOH B 1 149 16 HOH HOH . N 5 HOH B 2 150 17 HOH HOH . N 5 HOH B 3 151 22 HOH HOH . N 5 HOH B 4 152 29 HOH HOH . N 5 HOH B 5 153 44 HOH HOH . N 5 HOH B 6 154 49 HOH HOH . N 5 HOH B 7 155 56 HOH HOH . N 5 HOH B 8 156 61 HOH HOH . N 5 HOH B 9 157 73 HOH HOH . N 5 HOH B 10 158 91 HOH HOH . N 5 HOH B 11 159 109 HOH HOH . N 5 HOH B 12 160 116 HOH HOH . N 5 HOH B 13 161 123 HOH HOH . O 5 HOH C 1 145 4 HOH HOH . O 5 HOH C 2 146 9 HOH HOH . O 5 HOH C 3 147 13 HOH HOH . O 5 HOH C 4 148 18 HOH HOH . O 5 HOH C 5 149 21 HOH HOH . O 5 HOH C 6 150 25 HOH HOH . O 5 HOH C 7 151 26 HOH HOH . O 5 HOH C 8 152 37 HOH HOH . O 5 HOH C 9 153 39 HOH HOH . O 5 HOH C 10 154 43 HOH HOH . O 5 HOH C 11 155 45 HOH HOH . O 5 HOH C 12 156 50 HOH HOH . O 5 HOH C 13 157 51 HOH HOH . O 5 HOH C 14 158 59 HOH HOH . O 5 HOH C 15 159 74 HOH HOH . O 5 HOH C 16 160 75 HOH HOH . O 5 HOH C 17 161 90 HOH HOH . O 5 HOH C 18 162 106 HOH HOH . O 5 HOH C 19 163 107 HOH HOH . O 5 HOH C 20 164 108 HOH HOH . O 5 HOH C 21 165 118 HOH HOH . O 5 HOH C 22 166 124 HOH HOH . O 5 HOH C 23 167 126 HOH HOH . O 5 HOH C 24 168 129 HOH HOH . O 5 HOH C 25 169 134 HOH HOH . P 5 HOH D 1 149 10 HOH HOH . P 5 HOH D 2 150 20 HOH HOH . P 5 HOH D 3 151 28 HOH HOH . P 5 HOH D 4 152 36 HOH HOH . P 5 HOH D 5 153 38 HOH HOH . P 5 HOH D 6 154 46 HOH HOH . P 5 HOH D 7 155 69 HOH HOH . P 5 HOH D 8 156 83 HOH HOH . P 5 HOH D 9 157 85 HOH HOH . P 5 HOH D 10 158 88 HOH HOH . P 5 HOH D 11 159 89 HOH HOH . P 5 HOH D 12 160 96 HOH HOH . P 5 HOH D 13 161 98 HOH HOH . P 5 HOH D 14 162 102 HOH HOH . P 5 HOH D 15 163 104 HOH HOH . P 5 HOH D 16 164 105 HOH HOH . P 5 HOH D 17 165 110 HOH HOH . P 5 HOH D 18 166 114 HOH HOH . P 5 HOH D 19 167 130 HOH HOH . P 5 HOH D 20 168 131 HOH HOH . P 5 HOH D 21 169 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 9.816 1.77 9.263 1 28.36 ? CHA HEM 143 A 1 HETATM 2 C CHB HEM . . . E 3 8.971 5.809 11.746 1 30.87 ? CHB HEM 143 A 1 HETATM 3 C CHC HEM . . . E 3 6.196 2.983 14.685 1 26.1 ? CHC HEM 143 A 1 HETATM 4 C CHD HEM . . . E 3 7.102 -1.073 12.247 1 28.22 ? CHD HEM 143 A 1 HETATM 5 C C1A HEM . . . E 3 9.895 3.076 9.658 1 28.92 ? C1A HEM 143 A 1 HETATM 6 C C2A HEM . . . E 3 10.7 4.189 9.118 1 35.37 ? C2A HEM 143 A 1 HETATM 7 C C3A HEM . . . E 3 10.455 5.282 9.882 1 33.4 ? C3A HEM 143 A 1 HETATM 8 C C4A HEM . . . E 3 9.474 4.906 10.851 1 30.62 ? C4A HEM 143 A 1 HETATM 9 C CMA HEM . . . E 3 10.955 6.758 9.849 1 28.99 ? CMA HEM 143 A 1 HETATM 10 C CAA HEM . . . E 3 11.691 4.175 7.925 1 37.18 ? CAA HEM 143 A 1 HETATM 11 C CBA HEM . . . E 3 10.99 4.832 6.722 1 48.26 ? CBA HEM 143 A 1 HETATM 12 C CGA HEM . . . E 3 11.816 4.651 5.443 1 55.83 ? CGA HEM 143 A 1 HETATM 13 O O1A HEM . . . E 3 12.48 3.553 5.263 1 60.1 ? O1A HEM 143 A 1 HETATM 14 O O2A HEM . . . E 3 11.793 5.594 4.588 1 56.57 ? O2A HEM 143 A 1 HETATM 15 C C1B HEM . . . E 3 8.131 5.382 12.752 1 33.01 ? C1B HEM 143 A 1 HETATM 16 C C2B HEM . . . E 3 7.601 6.212 13.809 1 29.1 ? C2B HEM 143 A 1 HETATM 17 C C3B HEM . . . E 3 6.826 5.381 14.578 1 29.57 ? C3B HEM 143 A 1 HETATM 18 C C4B HEM . . . E 3 6.881 4.035 14.088 1 26.7 ? C4B HEM 143 A 1 HETATM 19 C CMB HEM . . . E 3 7.877 7.734 13.915 1 27.92 ? CMB HEM 143 A 1 HETATM 20 C CAB HEM . . . E 3 5.962 5.641 15.836 1 30.48 ? CAB HEM 143 A 1 HETATM 21 C CBB HEM . . . E 3 6.243 6.692 16.642 1 34.67 ? CBB HEM 143 A 1 HETATM 22 C C1C HEM . . . E 3 6.23 1.609 14.346 1 25.71 ? C1C HEM 143 A 1 HETATM 23 C C2C HEM . . . E 3 5.652 0.492 15.122 1 28.21 ? C2C HEM 143 A 1 HETATM 24 C C3C HEM . . . E 3 5.896 -0.6 14.384 1 28.78 ? C3C HEM 143 A 1 HETATM 25 C C4C HEM . . . E 3 6.651 -0.21 13.208 1 29.01 ? C4C HEM 143 A 1 HETATM 26 C CMC HEM . . . E 3 4.844 0.591 16.479 1 23.48 ? CMC HEM 143 A 1 HETATM 27 C CAC HEM . . . E 3 5.546 -2.097 14.563 1 26.53 ? CAC HEM 143 A 1 HETATM 28 C CBC HEM . . . E 3 6.133 -2.851 15.507 1 31.84 ? CBC HEM 143 A 1 HETATM 29 C C1D HEM . . . E 3 7.931 -0.682 11.241 1 29.4 ? C1D HEM 143 A 1 HETATM 30 C C2D HEM . . . E 3 8.54 -1.577 10.294 1 29.77 ? C2D HEM 143 A 1 HETATM 31 C C3D HEM . . . E 3 9.346 -0.66 9.412 1 31.98 ? C3D HEM 143 A 1 HETATM 32 C C4D HEM . . . E 3 9.185 0.692 9.909 1 32.23 ? C4D HEM 143 A 1 HETATM 33 C CMD HEM . . . E 3 8.401 -3.133 10.14 1 32.5 ? CMD HEM 143 A 1 HETATM 34 C CAD HEM . . . E 3 10.238 -1.009 8.201 1 33.61 ? CAD HEM 143 A 1 HETATM 35 C CBD HEM . . . E 3 11.633 -1.393 8.742 1 37.4 ? CBD HEM 143 A 1 HETATM 36 C CGD HEM . . . E 3 12.253 -2.077 7.564 1 43.38 ? CGD HEM 143 A 1 HETATM 37 O O1D HEM . . . E 3 12.071 -3.316 7.45 1 48.45 ? O1D HEM 143 A 1 HETATM 38 O O2D HEM . . . E 3 12.863 -1.402 6.692 1 44.71 ? O2D HEM 143 A 1 HETATM 39 N NA HEM . . . E 3 9.11 3.613 10.698 1 29.54 ? NA HEM 143 A 1 HETATM 40 N NB HEM . . . E 3 7.665 4.037 12.96 1 28.77 ? NB HEM 143 A 1 HETATM 41 N NC HEM . . . E 3 6.862 1.079 13.195 1 24.92 ? NC HEM 143 A 1 HETATM 42 N ND HEM . . . E 3 8.353 0.634 11.004 1 27.87 ? ND HEM 143 A 1 HETATM 43 FE FE HEM . . . E 3 7.953 2.347 11.878 1 29.72 ? FE HEM 143 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #