data_3BCQ # _model_server_result.job_id MbmLXhMaDS0Gpijh5W7c8A _model_server_result.datetime_utc '2024-11-29 07:59:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bcq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":147}' # _entry.id 3BCQ # _exptl.entry_id 3BCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.89 _cell.angle_gamma 90 _cell.entry_id 3BCQ _cell.length_a 119.366 _cell.length_b 54.039 _cell.length_c 101.906 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 88 A HIS 88 1_555 E FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 E FE HEM . A HEM 143 1_555 F O1 OXY . A OXY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? metalc ? metalc3 E FE HEM . A HEM 143 1_555 F O2 OXY . A OXY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc5 G FE HEM . B HEM 147 1_555 H O1 OXY . B OXY 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? metalc ? metalc6 G FE HEM . B HEM 147 1_555 H O2 OXY . B OXY 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc7 C NE2 HIS 88 C HIS 88 1_555 I FE HEM . C HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc8 I FE HEM . C HEM 143 1_555 J O1 OXY . C OXY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc9 I FE HEM . C HEM 143 1_555 J O2 OXY . C OXY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc10 D NE2 HIS 92 D HIS 92 1_555 K FE HEM . D HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 K FE HEM . D HEM 147 1_555 L O1 OXY . D OXY 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc12 K FE HEM . D HEM 147 1_555 L O2 OXY . D OXY 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 3BCQ _atom_sites.fract_transf_matrix[1][1] 0.008378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003711 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 143 1 HEM HEM . F 4 OXY A 1 144 1 OXY OXY . G 3 HEM B 1 147 2 HEM HEM . H 4 OXY B 1 148 2 OXY OXY . I 3 HEM C 1 143 3 HEM HEM . J 4 OXY C 1 144 3 OXY OXY . K 3 HEM D 1 147 4 HEM HEM . L 4 OXY D 1 148 4 OXY OXY . M 5 HOH A 1 145 3 HOH HOH . M 5 HOH A 2 146 14 HOH HOH . M 5 HOH A 3 147 15 HOH HOH . M 5 HOH A 4 148 19 HOH HOH . M 5 HOH A 5 149 23 HOH HOH . M 5 HOH A 6 150 24 HOH HOH . M 5 HOH A 7 151 31 HOH HOH . M 5 HOH A 8 152 35 HOH HOH . M 5 HOH A 9 153 40 HOH HOH . M 5 HOH A 10 154 42 HOH HOH . M 5 HOH A 11 155 48 HOH HOH . M 5 HOH A 12 156 52 HOH HOH . M 5 HOH A 13 157 53 HOH HOH . M 5 HOH A 14 158 54 HOH HOH . M 5 HOH A 15 159 55 HOH HOH . M 5 HOH A 16 160 60 HOH HOH . M 5 HOH A 17 161 62 HOH HOH . M 5 HOH A 18 162 63 HOH HOH . M 5 HOH A 19 163 65 HOH HOH . M 5 HOH A 20 164 67 HOH HOH . M 5 HOH A 21 165 70 HOH HOH . M 5 HOH A 22 166 79 HOH HOH . M 5 HOH A 23 167 80 HOH HOH . M 5 HOH A 24 168 81 HOH HOH . M 5 HOH A 25 169 86 HOH HOH . M 5 HOH A 26 170 97 HOH HOH . M 5 HOH A 27 171 112 HOH HOH . M 5 HOH A 28 172 117 HOH HOH . M 5 HOH A 29 173 127 HOH HOH . M 5 HOH A 30 174 133 HOH HOH . M 5 HOH A 31 175 136 HOH HOH . N 5 HOH B 1 149 16 HOH HOH . N 5 HOH B 2 150 17 HOH HOH . N 5 HOH B 3 151 22 HOH HOH . N 5 HOH B 4 152 29 HOH HOH . N 5 HOH B 5 153 44 HOH HOH . N 5 HOH B 6 154 49 HOH HOH . N 5 HOH B 7 155 56 HOH HOH . N 5 HOH B 8 156 61 HOH HOH . N 5 HOH B 9 157 73 HOH HOH . N 5 HOH B 10 158 91 HOH HOH . N 5 HOH B 11 159 109 HOH HOH . N 5 HOH B 12 160 116 HOH HOH . N 5 HOH B 13 161 123 HOH HOH . O 5 HOH C 1 145 4 HOH HOH . O 5 HOH C 2 146 9 HOH HOH . O 5 HOH C 3 147 13 HOH HOH . O 5 HOH C 4 148 18 HOH HOH . O 5 HOH C 5 149 21 HOH HOH . O 5 HOH C 6 150 25 HOH HOH . O 5 HOH C 7 151 26 HOH HOH . O 5 HOH C 8 152 37 HOH HOH . O 5 HOH C 9 153 39 HOH HOH . O 5 HOH C 10 154 43 HOH HOH . O 5 HOH C 11 155 45 HOH HOH . O 5 HOH C 12 156 50 HOH HOH . O 5 HOH C 13 157 51 HOH HOH . O 5 HOH C 14 158 59 HOH HOH . O 5 HOH C 15 159 74 HOH HOH . O 5 HOH C 16 160 75 HOH HOH . O 5 HOH C 17 161 90 HOH HOH . O 5 HOH C 18 162 106 HOH HOH . O 5 HOH C 19 163 107 HOH HOH . O 5 HOH C 20 164 108 HOH HOH . O 5 HOH C 21 165 118 HOH HOH . O 5 HOH C 22 166 124 HOH HOH . O 5 HOH C 23 167 126 HOH HOH . O 5 HOH C 24 168 129 HOH HOH . O 5 HOH C 25 169 134 HOH HOH . P 5 HOH D 1 149 10 HOH HOH . P 5 HOH D 2 150 20 HOH HOH . P 5 HOH D 3 151 28 HOH HOH . P 5 HOH D 4 152 36 HOH HOH . P 5 HOH D 5 153 38 HOH HOH . P 5 HOH D 6 154 46 HOH HOH . P 5 HOH D 7 155 69 HOH HOH . P 5 HOH D 8 156 83 HOH HOH . P 5 HOH D 9 157 85 HOH HOH . P 5 HOH D 10 158 88 HOH HOH . P 5 HOH D 11 159 89 HOH HOH . P 5 HOH D 12 160 96 HOH HOH . P 5 HOH D 13 161 98 HOH HOH . P 5 HOH D 14 162 102 HOH HOH . P 5 HOH D 15 163 104 HOH HOH . P 5 HOH D 16 164 105 HOH HOH . P 5 HOH D 17 165 110 HOH HOH . P 5 HOH D 18 166 114 HOH HOH . P 5 HOH D 19 167 130 HOH HOH . P 5 HOH D 20 168 131 HOH HOH . P 5 HOH D 21 169 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 3 -8.665 -0.395 46.187 1 37.64 ? CHA HEM 147 B 1 HETATM 2 C CHB HEM . . . G 3 -4.832 -2.772 44.331 1 36.69 ? CHB HEM 147 B 1 HETATM 3 C CHC HEM . . . G 3 -5.575 -0.451 40.152 1 36.48 ? CHC HEM 147 B 1 HETATM 4 C CHD HEM . . . G 3 -9.248 2.008 41.923 1 39 ? CHD HEM 147 B 1 HETATM 5 C C1A HEM . . . G 3 -7.566 -1.2 46.119 1 35.1 ? C1A HEM 147 B 1 HETATM 6 C C2A HEM . . . G 3 -6.913 -1.891 47.188 1 40.55 ? C2A HEM 147 B 1 HETATM 7 C C3A HEM . . . G 3 -5.86 -2.531 46.663 1 37.25 ? C3A HEM 147 B 1 HETATM 8 C C4A HEM . . . G 3 -5.799 -2.282 45.244 1 35.84 ? C4A HEM 147 B 1 HETATM 9 C CMA HEM . . . G 3 -4.848 -3.414 47.42 1 36.33 ? CMA HEM 147 B 1 HETATM 10 C CAA HEM . . . G 3 -7.351 -1.892 48.687 1 43.78 ? CAA HEM 147 B 1 HETATM 11 C CBA HEM . . . G 3 -8.342 -3.047 48.822 1 54.52 ? CBA HEM 147 B 1 HETATM 12 C CGA HEM . . . G 3 -9.174 -3.027 50.107 1 60.11 ? CGA HEM 147 B 1 HETATM 13 O O1A HEM . . . G 3 -9.499 -4.167 50.577 1 60.83 ? O1A HEM 147 B 1 HETATM 14 O O2A HEM . . . G 3 -9.533 -1.919 50.639 1 57.55 ? O2A HEM 147 B 1 HETATM 15 C C1B HEM . . . G 3 -4.703 -2.361 43.035 1 35.97 ? C1B HEM 147 B 1 HETATM 16 C C2B HEM . . . G 3 -3.771 -2.83 42.047 1 37.25 ? C2B HEM 147 B 1 HETATM 17 C C3B HEM . . . G 3 -4.006 -2.146 40.885 1 37.63 ? C3B HEM 147 B 1 HETATM 18 C C4B HEM . . . G 3 -5.112 -1.285 41.13 1 34.51 ? C4B HEM 147 B 1 HETATM 19 C CMB HEM . . . G 3 -2.709 -3.909 42.312 1 37.75 ? CMB HEM 147 B 1 HETATM 20 C CAB HEM . . . G 3 -3.376 -2.18 39.441 1 34.37 ? CAB HEM 147 B 1 HETATM 21 C CBB HEM . . . G 3 -2.119 -2.521 39.23 1 39.91 ? CBB HEM 147 B 1 HETATM 22 C C1C HEM . . . G 3 -6.585 0.436 40.213 1 33.48 ? C1C HEM 147 B 1 HETATM 23 C C2C HEM . . . G 3 -6.981 1.295 39.157 1 36.74 ? C2C HEM 147 B 1 HETATM 24 C C3C HEM . . . G 3 -8.039 2.011 39.637 1 37.03 ? C3C HEM 147 B 1 HETATM 25 C C4C HEM . . . G 3 -8.285 1.587 41.021 1 35.51 ? C4C HEM 147 B 1 HETATM 26 C CMC HEM . . . G 3 -6.305 1.366 37.752 1 34.1 ? CMC HEM 147 B 1 HETATM 27 C CAC HEM . . . G 3 -8.867 3.043 38.823 1 31.81 ? CAC HEM 147 B 1 HETATM 28 C CBC HEM . . . G 3 -8.522 4.32 38.672 1 36.87 ? CBC HEM 147 B 1 HETATM 29 C C1D HEM . . . G 3 -9.378 1.68 43.267 1 38.73 ? C1D HEM 147 B 1 HETATM 30 C C2D HEM . . . G 3 -10.216 2.373 44.194 1 39.27 ? C2D HEM 147 B 1 HETATM 31 C C3D HEM . . . G 3 -10.035 1.671 45.509 1 38.64 ? C3D HEM 147 B 1 HETATM 32 C C4D HEM . . . G 3 -9.111 0.574 45.258 1 39.46 ? C4D HEM 147 B 1 HETATM 33 C CMD HEM . . . G 3 -11.101 3.619 43.983 1 37.79 ? CMD HEM 147 B 1 HETATM 34 C CAD HEM . . . G 3 -10.767 2.104 46.789 1 42.31 ? CAD HEM 147 B 1 HETATM 35 C CBD HEM . . . G 3 -10.224 3.333 47.535 1 51.11 ? CBD HEM 147 B 1 HETATM 36 C CGD HEM . . . G 3 -11.01 3.433 48.866 1 57.79 ? CGD HEM 147 B 1 HETATM 37 O O1D HEM . . . G 3 -12.267 3.233 48.83 1 61.24 ? O1D HEM 147 B 1 HETATM 38 O O2D HEM . . . G 3 -10.428 3.66 49.984 1 58.5 ? O2D HEM 147 B 1 HETATM 39 N NA HEM . . . G 3 -6.871 -1.473 44.984 1 36.03 ? NA HEM 147 B 1 HETATM 40 N NB HEM . . . G 3 -5.509 -1.406 42.423 1 36.18 ? NB HEM 147 B 1 HETATM 41 N NC HEM . . . G 3 -7.376 0.632 41.299 1 34.08 ? NC HEM 147 B 1 HETATM 42 N ND HEM . . . G 3 -8.793 0.615 43.925 1 36.52 ? ND HEM 147 B 1 HETATM 43 FE FE HEM . . . G 3 -7.17 -0.356 43.122 1 37.98 ? FE HEM 147 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #