data_3BD1 # _model_server_result.job_id QBHDp2HtcDqVtBztwgIJEw _model_server_result.datetime_utc '2024-12-07 19:00:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":159}' # _entry.id 3BD1 # _exptl.entry_id 3BD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BD1 _cell.length_a 66.97 _cell.length_b 66.97 _cell.length_c 54.36 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 2_444 -y-1,x-y-1,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -33.485 -57.997721 -18.12 2 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3BD1 _atom_sites.fract_transf_matrix[1][1] 0.014932 _atom_sites.fract_transf_matrix[1][2] 0.008621 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 156 156 GOL GOL . E 2 GOL A 1 157 157 GOL GOL . F 2 GOL B 1 159 159 GOL GOL . G 3 SO4 C 1 160 160 SO4 SO4 . H 4 CL C 1 162 162 CL CL . I 3 SO4 C 1 161 161 SO4 SO4 . J 2 GOL C 1 158 158 GOL GOL . K 5 HOH A 1 158 158 HOH HOH . K 5 HOH A 2 159 159 HOH HOH . K 5 HOH A 3 160 160 HOH HOH . K 5 HOH A 4 161 161 HOH HOH . K 5 HOH A 5 162 162 HOH HOH . K 5 HOH A 6 163 163 HOH HOH . K 5 HOH A 7 164 164 HOH HOH . K 5 HOH A 8 165 165 HOH HOH . K 5 HOH A 9 166 166 HOH HOH . K 5 HOH A 10 167 167 HOH HOH . K 5 HOH A 11 168 168 HOH HOH . K 5 HOH A 12 169 169 HOH HOH . K 5 HOH A 13 170 170 HOH HOH . K 5 HOH A 14 171 171 HOH HOH . K 5 HOH A 15 172 172 HOH HOH . K 5 HOH A 16 173 173 HOH HOH . K 5 HOH A 17 174 174 HOH HOH . K 5 HOH A 18 175 175 HOH HOH . K 5 HOH A 19 176 176 HOH HOH . K 5 HOH A 20 177 177 HOH HOH . K 5 HOH A 21 178 178 HOH HOH . K 5 HOH A 22 179 179 HOH HOH . K 5 HOH A 23 180 180 HOH HOH . K 5 HOH A 24 181 181 HOH HOH . K 5 HOH A 25 182 182 HOH HOH . K 5 HOH A 26 183 183 HOH HOH . K 5 HOH A 27 184 184 HOH HOH . K 5 HOH A 28 185 185 HOH HOH . K 5 HOH A 29 186 186 HOH HOH . K 5 HOH A 30 187 187 HOH HOH . K 5 HOH A 31 188 188 HOH HOH . K 5 HOH A 32 189 189 HOH HOH . K 5 HOH A 33 190 190 HOH HOH . K 5 HOH A 34 191 191 HOH HOH . K 5 HOH A 35 192 192 HOH HOH . K 5 HOH A 36 193 193 HOH HOH . K 5 HOH A 37 194 194 HOH HOH . K 5 HOH A 38 195 195 HOH HOH . K 5 HOH A 39 196 196 HOH HOH . K 5 HOH A 40 197 197 HOH HOH . K 5 HOH A 41 198 198 HOH HOH . K 5 HOH A 42 199 199 HOH HOH . K 5 HOH A 43 200 200 HOH HOH . K 5 HOH A 44 201 201 HOH HOH . K 5 HOH A 45 202 202 HOH HOH . K 5 HOH A 46 203 203 HOH HOH . K 5 HOH A 47 204 204 HOH HOH . K 5 HOH A 48 205 205 HOH HOH . K 5 HOH A 49 206 206 HOH HOH . K 5 HOH A 50 207 207 HOH HOH . K 5 HOH A 51 208 208 HOH HOH . K 5 HOH A 52 209 209 HOH HOH . K 5 HOH A 53 210 210 HOH HOH . K 5 HOH A 54 211 211 HOH HOH . K 5 HOH A 55 212 212 HOH HOH . K 5 HOH A 56 213 213 HOH HOH . K 5 HOH A 57 214 214 HOH HOH . K 5 HOH A 58 215 215 HOH HOH . K 5 HOH A 59 216 216 HOH HOH . K 5 HOH A 60 217 217 HOH HOH . K 5 HOH A 61 218 218 HOH HOH . K 5 HOH A 62 219 219 HOH HOH . K 5 HOH A 63 220 220 HOH HOH . K 5 HOH A 64 221 221 HOH HOH . K 5 HOH A 65 222 222 HOH HOH . K 5 HOH A 66 223 223 HOH HOH . K 5 HOH A 67 224 224 HOH HOH . K 5 HOH A 68 225 225 HOH HOH . K 5 HOH A 69 226 226 HOH HOH . L 5 HOH B 1 160 160 HOH HOH . L 5 HOH B 2 161 161 HOH HOH . L 5 HOH B 3 162 162 HOH HOH . L 5 HOH B 4 163 163 HOH HOH . L 5 HOH B 5 164 164 HOH HOH . L 5 HOH B 6 165 165 HOH HOH . L 5 HOH B 7 166 166 HOH HOH . L 5 HOH B 8 167 167 HOH HOH . L 5 HOH B 9 168 168 HOH HOH . L 5 HOH B 10 169 169 HOH HOH . L 5 HOH B 11 170 170 HOH HOH . L 5 HOH B 12 171 171 HOH HOH . L 5 HOH B 13 172 172 HOH HOH . L 5 HOH B 14 173 173 HOH HOH . L 5 HOH B 15 174 174 HOH HOH . L 5 HOH B 16 175 175 HOH HOH . L 5 HOH B 17 176 176 HOH HOH . L 5 HOH B 18 177 177 HOH HOH . L 5 HOH B 19 178 178 HOH HOH . L 5 HOH B 20 179 179 HOH HOH . L 5 HOH B 21 180 180 HOH HOH . L 5 HOH B 22 181 181 HOH HOH . L 5 HOH B 23 182 182 HOH HOH . L 5 HOH B 24 183 183 HOH HOH . L 5 HOH B 25 184 184 HOH HOH . M 5 HOH C 1 163 163 HOH HOH . M 5 HOH C 2 164 164 HOH HOH . M 5 HOH C 3 165 165 HOH HOH . M 5 HOH C 4 166 166 HOH HOH . M 5 HOH C 5 167 167 HOH HOH . M 5 HOH C 6 168 168 HOH HOH . M 5 HOH C 7 169 169 HOH HOH . M 5 HOH C 8 170 170 HOH HOH . M 5 HOH C 9 171 171 HOH HOH . M 5 HOH C 10 172 172 HOH HOH . M 5 HOH C 11 173 173 HOH HOH . M 5 HOH C 12 174 174 HOH HOH . M 5 HOH C 13 175 175 HOH HOH . M 5 HOH C 14 176 176 HOH HOH . M 5 HOH C 15 177 177 HOH HOH . M 5 HOH C 16 178 178 HOH HOH . M 5 HOH C 17 179 179 HOH HOH . M 5 HOH C 18 180 180 HOH HOH . M 5 HOH C 19 181 181 HOH HOH . M 5 HOH C 20 182 182 HOH HOH . M 5 HOH C 21 183 183 HOH HOH . M 5 HOH C 22 184 184 HOH HOH . M 5 HOH C 23 185 185 HOH HOH . M 5 HOH C 24 186 186 HOH HOH . M 5 HOH C 25 187 187 HOH HOH . M 5 HOH C 26 188 188 HOH HOH . M 5 HOH C 27 189 189 HOH HOH . M 5 HOH C 28 190 190 HOH HOH . M 5 HOH C 29 191 191 HOH HOH . M 5 HOH C 30 192 192 HOH HOH . M 5 HOH C 31 193 193 HOH HOH . M 5 HOH C 32 194 194 HOH HOH . M 5 HOH C 33 195 195 HOH HOH . M 5 HOH C 34 196 196 HOH HOH . M 5 HOH C 35 197 197 HOH HOH . M 5 HOH C 36 198 198 HOH HOH . M 5 HOH C 37 199 199 HOH HOH . M 5 HOH C 38 200 200 HOH HOH . M 5 HOH C 39 201 201 HOH HOH . M 5 HOH C 40 202 202 HOH HOH . M 5 HOH C 41 203 203 HOH HOH . M 5 HOH C 42 204 204 HOH HOH . M 5 HOH C 43 205 205 HOH HOH . M 5 HOH C 44 206 206 HOH HOH . M 5 HOH C 45 207 207 HOH HOH . M 5 HOH C 46 208 208 HOH HOH . M 5 HOH C 47 209 209 HOH HOH . M 5 HOH C 48 210 210 HOH HOH . M 5 HOH C 49 211 211 HOH HOH . M 5 HOH C 50 212 212 HOH HOH . M 5 HOH C 51 213 213 HOH HOH . M 5 HOH C 52 214 214 HOH HOH . M 5 HOH C 53 215 215 HOH HOH . M 5 HOH C 54 216 216 HOH HOH . M 5 HOH C 55 217 217 HOH HOH . M 5 HOH C 56 218 218 HOH HOH . M 5 HOH C 57 219 219 HOH HOH . M 5 HOH C 58 220 220 HOH HOH . M 5 HOH C 59 221 221 HOH HOH . M 5 HOH C 60 222 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 -13.634 -7.965 12.355 1 52.93 ? C1 GOL 159 B 1 HETATM 2 O O1 GOL . . . F 2 -13.672 -7.044 13.424 1 68.49 ? O1 GOL 159 B 1 HETATM 3 C C2 GOL . . . F 2 -12.207 -8.258 11.903 1 55.89 ? C2 GOL 159 B 1 HETATM 4 O O2 GOL . . . F 2 -11.372 -7.168 12.233 1 71.77 ? O2 GOL 159 B 1 HETATM 5 C C3 GOL . . . F 2 -12.028 -8.529 10.415 1 51.22 ? C3 GOL 159 B 1 HETATM 6 O O3 GOL . . . F 2 -13.18 -8.852 9.665 1 48.65 ? O3 GOL 159 B 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #