data_3BD4
#
_model_server_result.job_id            e_Xzfv4pyYsrysNQ9xvcTQ 
_model_server_result.datetime_utc      '2025-03-06 03:28:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bd4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2}' 
#
_entry.id    3BD4 
#
_exptl.entry_id    3BD4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3BD4 
_cell.length_a            61.852 
_cell.length_b            61.852 
_cell.length_c            92.09 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BD4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
A,B,C,D,E,F,G 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 181 1_555 A SG CYS 93 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 22 B CYS 181 1_555 B SG CYS 93 B CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3BD4 
_atom_sites.fract_transf_matrix[1][1]    0.016168 
_atom_sites.fract_transf_matrix[1][2]    0.009334 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018669 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010859 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 2 2 CD CD . 
D 3 BTB A 1 1 1 BTB BTB . 
E 2 CD B 1 1 1 CD CD . 
F 4 HOH A 1 3 3 HOH TIP . 
F 4 HOH A 2 4 4 HOH TIP . 
F 4 HOH A 3 7 7 HOH TIP . 
F 4 HOH A 4 11 11 HOH TIP . 
F 4 HOH A 5 12 12 HOH TIP . 
F 4 HOH A 6 16 16 HOH TIP . 
F 4 HOH A 7 18 18 HOH TIP . 
F 4 HOH A 8 22 22 HOH TIP . 
F 4 HOH A 9 23 23 HOH TIP . 
F 4 HOH A 10 27 27 HOH TIP . 
F 4 HOH A 11 28 28 HOH TIP . 
F 4 HOH A 12 33 33 HOH TIP . 
F 4 HOH A 13 34 34 HOH TIP . 
F 4 HOH A 14 35 35 HOH TIP . 
F 4 HOH A 15 36 36 HOH TIP . 
F 4 HOH A 16 39 39 HOH TIP . 
F 4 HOH A 17 40 40 HOH TIP . 
F 4 HOH A 18 42 42 HOH TIP . 
F 4 HOH A 19 43 43 HOH TIP . 
F 4 HOH A 20 48 48 HOH TIP . 
F 4 HOH A 21 50 50 HOH TIP . 
F 4 HOH A 22 52 52 HOH TIP . 
F 4 HOH A 23 53 53 HOH TIP . 
F 4 HOH A 24 54 54 HOH TIP . 
F 4 HOH A 25 55 55 HOH TIP . 
F 4 HOH A 26 56 56 HOH TIP . 
F 4 HOH A 27 57 57 HOH TIP . 
F 4 HOH A 28 58 58 HOH TIP . 
F 4 HOH A 29 59 59 HOH TIP . 
F 4 HOH A 30 60 60 HOH TIP . 
F 4 HOH A 31 62 62 HOH TIP . 
F 4 HOH A 32 63 63 HOH TIP . 
F 4 HOH A 33 69 69 HOH TIP . 
F 4 HOH A 34 70 70 HOH TIP . 
F 4 HOH A 35 71 71 HOH TIP . 
F 4 HOH A 36 76 76 HOH TIP . 
F 4 HOH A 37 77 77 HOH TIP . 
F 4 HOH A 38 83 83 HOH TIP . 
F 4 HOH A 39 85 85 HOH TIP . 
F 4 HOH A 40 89 89 HOH TIP . 
F 4 HOH A 41 91 91 HOH TIP . 
F 4 HOH A 42 93 93 HOH TIP . 
F 4 HOH A 43 94 94 HOH TIP . 
F 4 HOH A 44 95 95 HOH TIP . 
F 4 HOH A 45 96 96 HOH TIP . 
F 4 HOH A 46 104 104 HOH TIP . 
F 4 HOH A 47 105 105 HOH TIP . 
F 4 HOH A 48 106 106 HOH TIP . 
F 4 HOH A 49 107 107 HOH TIP . 
G 4 HOH B 1 6 6 HOH TIP . 
G 4 HOH B 2 9 9 HOH TIP . 
G 4 HOH B 3 10 10 HOH TIP . 
G 4 HOH B 4 13 13 HOH TIP . 
G 4 HOH B 5 14 14 HOH TIP . 
G 4 HOH B 6 15 15 HOH TIP . 
G 4 HOH B 7 17 17 HOH TIP . 
G 4 HOH B 8 19 19 HOH TIP . 
G 4 HOH B 9 20 20 HOH TIP . 
G 4 HOH B 10 21 21 HOH TIP . 
G 4 HOH B 11 26 26 HOH TIP . 
G 4 HOH B 12 29 29 HOH TIP . 
G 4 HOH B 13 30 30 HOH TIP . 
G 4 HOH B 14 31 31 HOH TIP . 
G 4 HOH B 15 32 32 HOH TIP . 
G 4 HOH B 16 37 37 HOH TIP . 
G 4 HOH B 17 38 38 HOH TIP . 
G 4 HOH B 18 41 41 HOH TIP . 
G 4 HOH B 19 44 44 HOH TIP . 
G 4 HOH B 20 45 45 HOH TIP . 
G 4 HOH B 21 46 46 HOH TIP . 
G 4 HOH B 22 47 47 HOH TIP . 
G 4 HOH B 23 49 49 HOH TIP . 
G 4 HOH B 24 51 51 HOH TIP . 
G 4 HOH B 25 65 65 HOH TIP . 
G 4 HOH B 26 66 66 HOH TIP . 
G 4 HOH B 27 68 68 HOH TIP . 
G 4 HOH B 28 72 72 HOH TIP . 
G 4 HOH B 29 73 73 HOH TIP . 
G 4 HOH B 30 74 74 HOH TIP . 
G 4 HOH B 31 75 75 HOH TIP . 
G 4 HOH B 32 78 78 HOH TIP . 
G 4 HOH B 33 79 79 HOH TIP . 
G 4 HOH B 34 80 80 HOH TIP . 
G 4 HOH B 35 81 81 HOH TIP . 
G 4 HOH B 36 82 82 HOH TIP . 
G 4 HOH B 37 84 84 HOH TIP . 
G 4 HOH B 38 86 86 HOH TIP . 
G 4 HOH B 39 87 87 HOH TIP . 
G 4 HOH B 40 88 88 HOH TIP . 
G 4 HOH B 41 97 97 HOH TIP . 
G 4 HOH B 42 98 98 HOH TIP . 
G 4 HOH B 43 99 99 HOH TIP . 
G 4 HOH B 44 100 100 HOH TIP . 
G 4 HOH B 45 101 101 HOH TIP . 
G 4 HOH B 46 103 103 HOH TIP . 
G 4 HOH B 47 108 108 HOH TIP . 
G 4 HOH B 48 109 109 HOH TIP . 
G 4 HOH B 49 110 110 HOH TIP . 
G 4 HOH B 50 111 111 HOH TIP . 
G 4 HOH B 51 112 112 HOH TIP . 
G 4 HOH B 52 113 113 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -13.975 
_atom_site.Cartn_y               -3.891 
_atom_site.Cartn_z               -10.412 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        104.62 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           2 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#