data_3BDE # _model_server_result.job_id nprDnqtjBqVX80yIyKOOLA _model_server_result.datetime_utc '2024-10-19 00:43:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":110}' # _entry.id 3BDE # _exptl.entry_id 3BDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.78 _cell.angle_gamma 90 _cell.entry_id 3BDE _cell.length_a 118.669 _cell.length_b 28.415 _cell.length_c 76.985 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,S 1 1,2 B,L,M,N,O,P,Q,R,T 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 82.787998 0 68.111995 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 19 A GLY 0 1_555 A N MSE 20 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C MSE 20 A MSE 1 1_555 A N ILE 21 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C SER 75 A SER 56 1_555 A N MSE 76 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 76 A MSE 57 1_555 A N GLU 77 A GLU 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 B C GLY 19 B GLY 0 1_555 B N MSE 20 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 B C MSE 20 B MSE 1 1_555 B N ILE 21 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 B C SER 75 B SER 56 1_555 B N MSE 76 B MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 76 B MSE 57 1_555 B N GLU 77 B GLU 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3BDE _atom_sites.fract_transf_matrix[1][1] 0.008427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00444 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.035193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 102 16 ACT ACT . D 3 EDO A 1 103 2 EDO EDO . E 3 EDO A 1 104 4 EDO EDO . F 3 EDO A 1 105 6 EDO EDO . G 3 EDO A 1 106 7 EDO EDO . H 3 EDO A 1 107 9 EDO EDO . I 3 EDO A 1 108 10 EDO EDO . J 3 EDO A 1 109 14 EDO EDO . K 3 EDO A 1 110 15 EDO EDO . L 3 EDO B 1 102 1 EDO EDO . M 3 EDO B 1 103 3 EDO EDO . N 3 EDO B 1 104 5 EDO EDO . O 3 EDO B 1 105 8 EDO EDO . P 3 EDO B 1 106 11 EDO EDO . Q 3 EDO B 1 107 12 EDO EDO . R 3 EDO B 1 108 13 EDO EDO . S 4 HOH A 1 111 19 HOH HOH . S 4 HOH A 2 112 20 HOH HOH . S 4 HOH A 3 113 21 HOH HOH . S 4 HOH A 4 114 23 HOH HOH . S 4 HOH A 5 115 26 HOH HOH . S 4 HOH A 6 116 27 HOH HOH . S 4 HOH A 7 117 29 HOH HOH . S 4 HOH A 8 118 31 HOH HOH . S 4 HOH A 9 119 33 HOH HOH . S 4 HOH A 10 120 35 HOH HOH . S 4 HOH A 11 121 36 HOH HOH . S 4 HOH A 12 122 37 HOH HOH . S 4 HOH A 13 123 38 HOH HOH . S 4 HOH A 14 124 39 HOH HOH . S 4 HOH A 15 125 41 HOH HOH . S 4 HOH A 16 126 43 HOH HOH . S 4 HOH A 17 127 45 HOH HOH . S 4 HOH A 18 128 46 HOH HOH . S 4 HOH A 19 129 47 HOH HOH . S 4 HOH A 20 130 48 HOH HOH . S 4 HOH A 21 131 49 HOH HOH . S 4 HOH A 22 132 50 HOH HOH . S 4 HOH A 23 133 54 HOH HOH . S 4 HOH A 24 134 55 HOH HOH . S 4 HOH A 25 135 58 HOH HOH . S 4 HOH A 26 136 61 HOH HOH . S 4 HOH A 27 137 64 HOH HOH . S 4 HOH A 28 138 67 HOH HOH . S 4 HOH A 29 139 71 HOH HOH . S 4 HOH A 30 140 72 HOH HOH . S 4 HOH A 31 141 75 HOH HOH . S 4 HOH A 32 142 76 HOH HOH . S 4 HOH A 33 143 78 HOH HOH . S 4 HOH A 34 144 79 HOH HOH . S 4 HOH A 35 145 82 HOH HOH . S 4 HOH A 36 146 84 HOH HOH . S 4 HOH A 37 147 85 HOH HOH . S 4 HOH A 38 148 87 HOH HOH . S 4 HOH A 39 149 88 HOH HOH . S 4 HOH A 40 150 89 HOH HOH . S 4 HOH A 41 151 90 HOH HOH . S 4 HOH A 42 152 93 HOH HOH . S 4 HOH A 43 153 94 HOH HOH . S 4 HOH A 44 154 95 HOH HOH . S 4 HOH A 45 155 96 HOH HOH . S 4 HOH A 46 156 98 HOH HOH . S 4 HOH A 47 157 99 HOH HOH . S 4 HOH A 48 158 101 HOH HOH . S 4 HOH A 49 159 102 HOH HOH . S 4 HOH A 50 160 103 HOH HOH . S 4 HOH A 51 161 105 HOH HOH . S 4 HOH A 52 162 107 HOH HOH . S 4 HOH A 53 163 109 HOH HOH . S 4 HOH A 54 164 110 HOH HOH . S 4 HOH A 55 165 111 HOH HOH . S 4 HOH A 56 166 114 HOH HOH . S 4 HOH A 57 167 118 HOH HOH . S 4 HOH A 58 168 119 HOH HOH . S 4 HOH A 59 169 122 HOH HOH . S 4 HOH A 60 170 123 HOH HOH . S 4 HOH A 61 171 126 HOH HOH . S 4 HOH A 62 172 129 HOH HOH . S 4 HOH A 63 173 131 HOH HOH . S 4 HOH A 64 174 132 HOH HOH . S 4 HOH A 65 175 135 HOH HOH . S 4 HOH A 66 176 137 HOH HOH . S 4 HOH A 67 177 139 HOH HOH . S 4 HOH A 68 178 141 HOH HOH . S 4 HOH A 69 179 143 HOH HOH . S 4 HOH A 70 180 145 HOH HOH . S 4 HOH A 71 181 146 HOH HOH . S 4 HOH A 72 182 151 HOH HOH . S 4 HOH A 73 183 153 HOH HOH . S 4 HOH A 74 184 155 HOH HOH . S 4 HOH A 75 185 156 HOH HOH . S 4 HOH A 76 186 158 HOH HOH . S 4 HOH A 77 187 160 HOH HOH . S 4 HOH A 78 188 161 HOH HOH . S 4 HOH A 79 189 167 HOH HOH . S 4 HOH A 80 190 168 HOH HOH . S 4 HOH A 81 191 170 HOH HOH . S 4 HOH A 82 192 172 HOH HOH . S 4 HOH A 83 193 174 HOH HOH . S 4 HOH A 84 194 175 HOH HOH . S 4 HOH A 85 195 176 HOH HOH . S 4 HOH A 86 196 177 HOH HOH . S 4 HOH A 87 197 178 HOH HOH . S 4 HOH A 88 198 180 HOH HOH . S 4 HOH A 89 199 184 HOH HOH . S 4 HOH A 90 200 187 HOH HOH . S 4 HOH A 91 201 188 HOH HOH . S 4 HOH A 92 202 189 HOH HOH . S 4 HOH A 93 203 190 HOH HOH . S 4 HOH A 94 204 191 HOH HOH . S 4 HOH A 95 205 193 HOH HOH . S 4 HOH A 96 206 198 HOH HOH . S 4 HOH A 97 207 199 HOH HOH . S 4 HOH A 98 208 201 HOH HOH . S 4 HOH A 99 209 203 HOH HOH . S 4 HOH A 100 210 205 HOH HOH . S 4 HOH A 101 211 207 HOH HOH . S 4 HOH A 102 212 214 HOH HOH . S 4 HOH A 103 213 217 HOH HOH . S 4 HOH A 104 214 219 HOH HOH . S 4 HOH A 105 215 220 HOH HOH . S 4 HOH A 106 216 221 HOH HOH . S 4 HOH A 107 217 224 HOH HOH . S 4 HOH A 108 218 226 HOH HOH . S 4 HOH A 109 219 227 HOH HOH . S 4 HOH A 110 220 231 HOH HOH . S 4 HOH A 111 221 232 HOH HOH . S 4 HOH A 112 222 233 HOH HOH . S 4 HOH A 113 223 235 HOH HOH . S 4 HOH A 114 224 237 HOH HOH . S 4 HOH A 115 225 238 HOH HOH . S 4 HOH A 116 226 241 HOH HOH . S 4 HOH A 117 227 245 HOH HOH . S 4 HOH A 118 228 246 HOH HOH . S 4 HOH A 119 229 247 HOH HOH . S 4 HOH A 120 230 248 HOH HOH . S 4 HOH A 121 231 249 HOH HOH . S 4 HOH A 122 232 251 HOH HOH . S 4 HOH A 123 233 252 HOH HOH . S 4 HOH A 124 234 253 HOH HOH . S 4 HOH A 125 235 254 HOH HOH . S 4 HOH A 126 236 255 HOH HOH . S 4 HOH A 127 237 256 HOH HOH . S 4 HOH A 128 238 260 HOH HOH . S 4 HOH A 129 239 262 HOH HOH . S 4 HOH A 130 240 209 HOH HOH . T 4 HOH B 1 109 17 HOH HOH . T 4 HOH B 2 110 18 HOH HOH . T 4 HOH B 3 111 22 HOH HOH . T 4 HOH B 4 112 24 HOH HOH . T 4 HOH B 5 113 25 HOH HOH . T 4 HOH B 6 114 28 HOH HOH . T 4 HOH B 7 115 30 HOH HOH . T 4 HOH B 8 116 32 HOH HOH . T 4 HOH B 9 117 34 HOH HOH . T 4 HOH B 10 118 40 HOH HOH . T 4 HOH B 11 119 42 HOH HOH . T 4 HOH B 12 120 44 HOH HOH . T 4 HOH B 13 121 51 HOH HOH . T 4 HOH B 14 122 52 HOH HOH . T 4 HOH B 15 123 53 HOH HOH . T 4 HOH B 16 124 56 HOH HOH . T 4 HOH B 17 125 57 HOH HOH . T 4 HOH B 18 126 59 HOH HOH . T 4 HOH B 19 127 60 HOH HOH . T 4 HOH B 20 128 62 HOH HOH . T 4 HOH B 21 129 63 HOH HOH . T 4 HOH B 22 130 65 HOH HOH . T 4 HOH B 23 131 66 HOH HOH . T 4 HOH B 24 132 68 HOH HOH . T 4 HOH B 25 133 69 HOH HOH . T 4 HOH B 26 134 70 HOH HOH . T 4 HOH B 27 135 73 HOH HOH . T 4 HOH B 28 136 74 HOH HOH . T 4 HOH B 29 137 77 HOH HOH . T 4 HOH B 30 138 80 HOH HOH . T 4 HOH B 31 139 81 HOH HOH . T 4 HOH B 32 140 83 HOH HOH . T 4 HOH B 33 141 86 HOH HOH . T 4 HOH B 34 142 91 HOH HOH . T 4 HOH B 35 143 92 HOH HOH . T 4 HOH B 36 144 97 HOH HOH . T 4 HOH B 37 145 100 HOH HOH . T 4 HOH B 38 146 104 HOH HOH . T 4 HOH B 39 147 106 HOH HOH . T 4 HOH B 40 148 108 HOH HOH . T 4 HOH B 41 149 112 HOH HOH . T 4 HOH B 42 150 113 HOH HOH . T 4 HOH B 43 151 115 HOH HOH . T 4 HOH B 44 152 116 HOH HOH . T 4 HOH B 45 153 117 HOH HOH . T 4 HOH B 46 154 120 HOH HOH . T 4 HOH B 47 155 121 HOH HOH . T 4 HOH B 48 156 124 HOH HOH . T 4 HOH B 49 157 125 HOH HOH . T 4 HOH B 50 158 127 HOH HOH . T 4 HOH B 51 159 128 HOH HOH . T 4 HOH B 52 160 130 HOH HOH . T 4 HOH B 53 161 133 HOH HOH . T 4 HOH B 54 162 134 HOH HOH . T 4 HOH B 55 163 136 HOH HOH . T 4 HOH B 56 164 138 HOH HOH . T 4 HOH B 57 165 140 HOH HOH . T 4 HOH B 58 166 142 HOH HOH . T 4 HOH B 59 167 144 HOH HOH . T 4 HOH B 60 168 147 HOH HOH . T 4 HOH B 61 169 148 HOH HOH . T 4 HOH B 62 170 149 HOH HOH . T 4 HOH B 63 171 150 HOH HOH . T 4 HOH B 64 172 152 HOH HOH . T 4 HOH B 65 173 154 HOH HOH . T 4 HOH B 66 174 157 HOH HOH . T 4 HOH B 67 175 159 HOH HOH . T 4 HOH B 68 176 162 HOH HOH . T 4 HOH B 69 177 163 HOH HOH . T 4 HOH B 70 178 164 HOH HOH . T 4 HOH B 71 179 165 HOH HOH . T 4 HOH B 72 180 166 HOH HOH . T 4 HOH B 73 181 169 HOH HOH . T 4 HOH B 74 182 171 HOH HOH . T 4 HOH B 75 183 173 HOH HOH . T 4 HOH B 76 184 179 HOH HOH . T 4 HOH B 77 185 181 HOH HOH . T 4 HOH B 78 186 182 HOH HOH . T 4 HOH B 79 187 183 HOH HOH . T 4 HOH B 80 188 185 HOH HOH . T 4 HOH B 81 189 186 HOH HOH . T 4 HOH B 82 190 192 HOH HOH . T 4 HOH B 83 191 194 HOH HOH . T 4 HOH B 84 192 195 HOH HOH . T 4 HOH B 85 193 196 HOH HOH . T 4 HOH B 86 194 197 HOH HOH . T 4 HOH B 87 195 200 HOH HOH . T 4 HOH B 88 196 202 HOH HOH . T 4 HOH B 89 197 204 HOH HOH . T 4 HOH B 90 198 206 HOH HOH . T 4 HOH B 91 199 208 HOH HOH . T 4 HOH B 92 201 210 HOH HOH . T 4 HOH B 93 202 211 HOH HOH . T 4 HOH B 94 203 212 HOH HOH . T 4 HOH B 95 204 213 HOH HOH . T 4 HOH B 96 205 215 HOH HOH . T 4 HOH B 97 206 216 HOH HOH . T 4 HOH B 98 207 218 HOH HOH . T 4 HOH B 99 208 222 HOH HOH . T 4 HOH B 100 209 223 HOH HOH . T 4 HOH B 101 210 225 HOH HOH . T 4 HOH B 102 211 228 HOH HOH . T 4 HOH B 103 212 229 HOH HOH . T 4 HOH B 104 213 230 HOH HOH . T 4 HOH B 105 214 234 HOH HOH . T 4 HOH B 106 215 236 HOH HOH . T 4 HOH B 107 216 239 HOH HOH . T 4 HOH B 108 217 240 HOH HOH . T 4 HOH B 109 218 242 HOH HOH . T 4 HOH B 110 219 243 HOH HOH . T 4 HOH B 111 220 244 HOH HOH . T 4 HOH B 112 221 250 HOH HOH . T 4 HOH B 113 222 257 HOH HOH . T 4 HOH B 114 223 258 HOH HOH . T 4 HOH B 115 224 259 HOH HOH . T 4 HOH B 116 225 261 HOH HOH . T 4 HOH B 117 226 263 HOH HOH . T 4 HOH B 118 227 264 HOH HOH . T 4 HOH B 119 228 265 HOH HOH . T 4 HOH B 120 229 266 HOH HOH . T 4 HOH B 121 230 267 HOH HOH . T 4 HOH B 122 231 268 HOH HOH . T 4 HOH B 123 232 269 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 3 20.128 4.494 -1.544 1 44.14 ? C1 EDO 110 A 1 HETATM 2 O O1 EDO . . . K 3 21.233 3.599 -1.712 1 41.11 ? O1 EDO 110 A 1 HETATM 3 C C2 EDO . . . K 3 19.1 4.214 -2.626 1 45.63 ? C2 EDO 110 A 1 HETATM 4 O O2 EDO . . . K 3 17.772 4.292 -2.095 1 52.04 ? O2 EDO 110 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #