data_3BDX
#
_model_server_result.job_id            hbTckHNaw7WRxcSHNwdUrA 
_model_server_result.datetime_utc      '2024-11-09 02:23:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bdx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    3BDX 
#
_exptl.entry_id    3BDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BDX 
_cell.length_a            56.11 
_cell.length_b            106.12 
_cell.length_c            133.36 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 
A,D,E,F,G,H,N 2 1 
B,I,J,K,O 3 1 
C,L,M,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 I N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 91 C CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 1 n n 
C OXT ACT sing 2 n n 
C CH3 ACT sing 3 n n 
CH3 H1 ACT sing 4 n n 
CH3 H2 ACT sing 5 n n 
CH3 H3 ACT sing 6 n n 
#
_atom_sites.entry_id                     3BDX 
_atom_sites.fract_transf_matrix[1][1]    0.017823 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009423 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007499 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ACT A 1 401 401 ACT ACT . 
E 2 ACT A 1 402 402 ACT ACT . 
F 2 ACT A 1 404 404 ACT ACT . 
G 3 GOL A 1 501 501 GOL GOL . 
H 3 GOL A 1 503 503 GOL GOL . 
I 2 ACT B 1 403 403 ACT ACT . 
J 3 GOL B 1 504 504 GOL GOL . 
K 4 MES B 1 601 601 MES MES . 
L 2 ACT C 1 405 405 ACT ACT . 
M 3 GOL C 1 502 502 GOL GOL . 
N 5 HOH A 1 204 204 HOH HOH . 
N 5 HOH A 2 205 205 HOH HOH . 
N 5 HOH A 3 206 206 HOH HOH . 
N 5 HOH A 4 210 210 HOH HOH . 
N 5 HOH A 5 212 212 HOH HOH . 
N 5 HOH A 6 213 213 HOH HOH . 
N 5 HOH A 7 217 217 HOH HOH . 
N 5 HOH A 8 224 224 HOH HOH . 
N 5 HOH A 9 229 229 HOH HOH . 
N 5 HOH A 10 230 230 HOH HOH . 
N 5 HOH A 11 232 232 HOH HOH . 
N 5 HOH A 12 235 235 HOH HOH . 
N 5 HOH A 13 236 236 HOH HOH . 
N 5 HOH A 14 237 237 HOH HOH . 
N 5 HOH A 15 238 238 HOH HOH . 
N 5 HOH A 16 243 243 HOH HOH . 
N 5 HOH A 17 244 244 HOH HOH . 
N 5 HOH A 18 249 249 HOH HOH . 
N 5 HOH A 19 251 251 HOH HOH . 
N 5 HOH A 20 252 252 HOH HOH . 
N 5 HOH A 21 256 256 HOH HOH . 
N 5 HOH A 22 258 258 HOH HOH . 
N 5 HOH A 23 259 259 HOH HOH . 
N 5 HOH A 24 260 260 HOH HOH . 
N 5 HOH A 25 267 267 HOH HOH . 
N 5 HOH A 26 268 268 HOH HOH . 
N 5 HOH A 27 279 279 HOH HOH . 
N 5 HOH A 28 290 290 HOH HOH . 
N 5 HOH A 29 292 292 HOH HOH . 
N 5 HOH A 30 293 293 HOH HOH . 
N 5 HOH A 31 294 294 HOH HOH . 
N 5 HOH A 32 300 300 HOH HOH . 
O 5 HOH B 1 201 201 HOH HOH . 
O 5 HOH B 2 202 202 HOH HOH . 
O 5 HOH B 3 207 207 HOH HOH . 
O 5 HOH B 4 209 209 HOH HOH . 
O 5 HOH B 5 214 214 HOH HOH . 
O 5 HOH B 6 215 215 HOH HOH . 
O 5 HOH B 7 218 218 HOH HOH . 
O 5 HOH B 8 220 220 HOH HOH . 
O 5 HOH B 9 221 221 HOH HOH . 
O 5 HOH B 10 227 227 HOH HOH . 
O 5 HOH B 11 233 233 HOH HOH . 
O 5 HOH B 12 248 248 HOH HOH . 
O 5 HOH B 13 250 250 HOH HOH . 
O 5 HOH B 14 253 253 HOH HOH . 
O 5 HOH B 15 254 254 HOH HOH . 
O 5 HOH B 16 261 261 HOH HOH . 
O 5 HOH B 17 262 262 HOH HOH . 
O 5 HOH B 18 263 263 HOH HOH . 
O 5 HOH B 19 269 269 HOH HOH . 
O 5 HOH B 20 270 270 HOH HOH . 
O 5 HOH B 21 271 271 HOH HOH . 
O 5 HOH B 22 276 276 HOH HOH . 
O 5 HOH B 23 277 277 HOH HOH . 
O 5 HOH B 24 278 278 HOH HOH . 
O 5 HOH B 25 281 281 HOH HOH . 
O 5 HOH B 26 284 284 HOH HOH . 
O 5 HOH B 27 288 288 HOH HOH . 
O 5 HOH B 28 289 289 HOH HOH . 
O 5 HOH B 29 295 295 HOH HOH . 
O 5 HOH B 30 298 298 HOH HOH . 
O 5 HOH B 31 299 299 HOH HOH . 
P 5 HOH C 1 203 203 HOH HOH . 
P 5 HOH C 2 208 208 HOH HOH . 
P 5 HOH C 3 211 211 HOH HOH . 
P 5 HOH C 4 216 216 HOH HOH . 
P 5 HOH C 5 219 219 HOH HOH . 
P 5 HOH C 6 222 222 HOH HOH . 
P 5 HOH C 7 223 223 HOH HOH . 
P 5 HOH C 8 225 225 HOH HOH . 
P 5 HOH C 9 226 226 HOH HOH . 
P 5 HOH C 10 228 228 HOH HOH . 
P 5 HOH C 11 231 231 HOH HOH . 
P 5 HOH C 12 234 234 HOH HOH . 
P 5 HOH C 13 239 239 HOH HOH . 
P 5 HOH C 14 240 240 HOH HOH . 
P 5 HOH C 15 241 241 HOH HOH . 
P 5 HOH C 16 242 242 HOH HOH . 
P 5 HOH C 17 245 245 HOH HOH . 
P 5 HOH C 18 246 246 HOH HOH . 
P 5 HOH C 19 247 247 HOH HOH . 
P 5 HOH C 20 255 255 HOH HOH . 
P 5 HOH C 21 257 257 HOH HOH . 
P 5 HOH C 22 264 264 HOH HOH . 
P 5 HOH C 23 265 265 HOH HOH . 
P 5 HOH C 24 266 266 HOH HOH . 
P 5 HOH C 25 272 272 HOH HOH . 
P 5 HOH C 26 273 273 HOH HOH . 
P 5 HOH C 27 274 274 HOH HOH . 
P 5 HOH C 28 275 275 HOH HOH . 
P 5 HOH C 29 280 280 HOH HOH . 
P 5 HOH C 30 282 282 HOH HOH . 
P 5 HOH C 31 283 283 HOH HOH . 
P 5 HOH C 32 285 285 HOH HOH . 
P 5 HOH C 33 286 286 HOH HOH . 
P 5 HOH C 34 287 287 HOH HOH . 
P 5 HOH C 35 291 291 HOH HOH . 
P 5 HOH C 36 296 296 HOH HOH . 
P 5 HOH C 37 297 297 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . D 2 27.859 30.574 57.949 1 21.76 ? C ACT 401 A 1 
HETATM 2 O O ACT . . . D 2 28.001 29.442 57.468 1 21.28 ? O ACT 401 A 1 
HETATM 3 O OXT ACT . . . D 2 27.486 30.716 59.115 1 20.68 ? OXT ACT 401 A 1 
HETATM 4 C CH3 ACT . . . D 2 28.146 31.794 57.1 1 18.71 ? CH3 ACT 401 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#