data_3BE4 # _model_server_result.job_id 3EpqJzeJabx1H8pqo4QLfQ _model_server_result.datetime_utc '2024-11-14 16:59:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3be4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":221}' # _entry.id 3BE4 # _exptl.entry_id 3BE4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BE4 _cell.length_a 101.175 _cell.length_b 101.175 _cell.length_c 72.433 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 218 1_555 C O2G AP5 . A AP5 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc2 B MG MG . A MG 218 1_555 C O1D AP5 . A AP5 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 B MG MG . A MG 218 1_555 F O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc4 B MG MG . A MG 218 1_555 F O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc5 B MG MG . A MG 218 1_555 F O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc6 B MG MG . A MG 218 1_555 F O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 3BE4 _atom_sites.fract_transf_matrix[1][1] 0.009884 _atom_sites.fract_transf_matrix[1][2] 0.005706 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 218 1 MG MG . C 3 AP5 A 1 219 1 AP5 AP5 . D 4 GOL A 1 220 1 GOL GOL . E 4 GOL A 1 221 1 GOL GOL . F 5 HOH A 1 222 7 HOH HOH . F 5 HOH A 2 223 10 HOH HOH . F 5 HOH A 3 224 11 HOH HOH . F 5 HOH A 4 225 12 HOH HOH . F 5 HOH A 5 226 14 HOH HOH . F 5 HOH A 6 227 15 HOH HOH . F 5 HOH A 7 228 16 HOH HOH . F 5 HOH A 8 229 18 HOH HOH . F 5 HOH A 9 230 19 HOH HOH . F 5 HOH A 10 231 20 HOH HOH . F 5 HOH A 11 232 23 HOH HOH . F 5 HOH A 12 233 24 HOH HOH . F 5 HOH A 13 234 25 HOH HOH . F 5 HOH A 14 235 26 HOH HOH . F 5 HOH A 15 236 30 HOH HOH . F 5 HOH A 16 237 31 HOH HOH . F 5 HOH A 17 238 32 HOH HOH . F 5 HOH A 18 239 34 HOH HOH . F 5 HOH A 19 240 35 HOH HOH . F 5 HOH A 20 241 36 HOH HOH . F 5 HOH A 21 242 39 HOH HOH . F 5 HOH A 22 243 40 HOH HOH . F 5 HOH A 23 244 41 HOH HOH . F 5 HOH A 24 245 42 HOH HOH . F 5 HOH A 25 246 43 HOH HOH . F 5 HOH A 26 247 44 HOH HOH . F 5 HOH A 27 248 45 HOH HOH . F 5 HOH A 28 249 47 HOH HOH . F 5 HOH A 29 250 48 HOH HOH . F 5 HOH A 30 251 49 HOH HOH . F 5 HOH A 31 252 50 HOH HOH . F 5 HOH A 32 253 51 HOH HOH . F 5 HOH A 33 254 52 HOH HOH . F 5 HOH A 34 255 53 HOH HOH . F 5 HOH A 35 256 54 HOH HOH . F 5 HOH A 36 257 55 HOH HOH . F 5 HOH A 37 258 56 HOH HOH . F 5 HOH A 38 259 58 HOH HOH . F 5 HOH A 39 260 59 HOH HOH . F 5 HOH A 40 261 60 HOH HOH . F 5 HOH A 41 262 61 HOH HOH . F 5 HOH A 42 263 62 HOH HOH . F 5 HOH A 43 264 63 HOH HOH . F 5 HOH A 44 265 65 HOH HOH . F 5 HOH A 45 266 66 HOH HOH . F 5 HOH A 46 267 68 HOH HOH . F 5 HOH A 47 268 70 HOH HOH . F 5 HOH A 48 269 71 HOH HOH . F 5 HOH A 49 270 73 HOH HOH . F 5 HOH A 50 271 74 HOH HOH . F 5 HOH A 51 272 75 HOH HOH . F 5 HOH A 52 273 76 HOH HOH . F 5 HOH A 53 274 77 HOH HOH . F 5 HOH A 54 275 79 HOH HOH . F 5 HOH A 55 276 80 HOH HOH . F 5 HOH A 56 277 81 HOH HOH . F 5 HOH A 57 278 82 HOH HOH . F 5 HOH A 58 279 84 HOH HOH . F 5 HOH A 59 280 88 HOH HOH . F 5 HOH A 60 281 89 HOH HOH . F 5 HOH A 61 282 90 HOH HOH . F 5 HOH A 62 283 91 HOH HOH . F 5 HOH A 63 284 92 HOH HOH . F 5 HOH A 64 285 93 HOH HOH . F 5 HOH A 65 286 94 HOH HOH . F 5 HOH A 66 287 95 HOH HOH . F 5 HOH A 67 288 97 HOH HOH . F 5 HOH A 68 289 98 HOH HOH . F 5 HOH A 69 290 99 HOH HOH . F 5 HOH A 70 291 100 HOH HOH . F 5 HOH A 71 292 101 HOH HOH . F 5 HOH A 72 293 102 HOH HOH . F 5 HOH A 73 294 103 HOH HOH . F 5 HOH A 74 295 104 HOH HOH . F 5 HOH A 75 296 105 HOH HOH . F 5 HOH A 76 297 106 HOH HOH . F 5 HOH A 77 298 107 HOH HOH . F 5 HOH A 78 299 109 HOH HOH . F 5 HOH A 79 300 110 HOH HOH . F 5 HOH A 80 301 111 HOH HOH . F 5 HOH A 81 302 113 HOH HOH . F 5 HOH A 82 303 114 HOH HOH . F 5 HOH A 83 304 115 HOH HOH . F 5 HOH A 84 305 116 HOH HOH . F 5 HOH A 85 306 117 HOH HOH . F 5 HOH A 86 307 118 HOH HOH . F 5 HOH A 87 308 119 HOH HOH . F 5 HOH A 88 309 120 HOH HOH . F 5 HOH A 89 310 121 HOH HOH . F 5 HOH A 90 311 122 HOH HOH . F 5 HOH A 91 312 126 HOH HOH . F 5 HOH A 92 313 127 HOH HOH . F 5 HOH A 93 314 129 HOH HOH . F 5 HOH A 94 315 130 HOH HOH . F 5 HOH A 95 316 131 HOH HOH . F 5 HOH A 96 317 132 HOH HOH . F 5 HOH A 97 318 133 HOH HOH . F 5 HOH A 98 319 134 HOH HOH . F 5 HOH A 99 320 135 HOH HOH . F 5 HOH A 100 321 136 HOH HOH . F 5 HOH A 101 322 137 HOH HOH . F 5 HOH A 102 323 138 HOH HOH . F 5 HOH A 103 324 140 HOH HOH . F 5 HOH A 104 325 141 HOH HOH . F 5 HOH A 105 326 143 HOH HOH . F 5 HOH A 106 327 144 HOH HOH . F 5 HOH A 107 328 145 HOH HOH . F 5 HOH A 108 329 146 HOH HOH . F 5 HOH A 109 330 147 HOH HOH . F 5 HOH A 110 331 149 HOH HOH . F 5 HOH A 111 332 151 HOH HOH . F 5 HOH A 112 333 152 HOH HOH . F 5 HOH A 113 334 153 HOH HOH . F 5 HOH A 114 335 154 HOH HOH . F 5 HOH A 115 336 155 HOH HOH . F 5 HOH A 116 337 157 HOH HOH . F 5 HOH A 117 338 158 HOH HOH . F 5 HOH A 118 339 160 HOH HOH . F 5 HOH A 119 340 163 HOH HOH . F 5 HOH A 120 341 164 HOH HOH . F 5 HOH A 121 342 165 HOH HOH . F 5 HOH A 122 343 166 HOH HOH . F 5 HOH A 123 344 167 HOH HOH . F 5 HOH A 124 345 168 HOH HOH . F 5 HOH A 125 346 169 HOH HOH . F 5 HOH A 126 347 170 HOH HOH . F 5 HOH A 127 348 171 HOH HOH . F 5 HOH A 128 349 172 HOH HOH . F 5 HOH A 129 350 173 HOH HOH . F 5 HOH A 130 351 174 HOH HOH . F 5 HOH A 131 352 175 HOH HOH . F 5 HOH A 132 353 176 HOH HOH . F 5 HOH A 133 354 177 HOH HOH . F 5 HOH A 134 355 179 HOH HOH . F 5 HOH A 135 356 180 HOH HOH . F 5 HOH A 136 357 181 HOH HOH . F 5 HOH A 137 358 182 HOH HOH . F 5 HOH A 138 359 183 HOH HOH . F 5 HOH A 139 360 184 HOH HOH . F 5 HOH A 140 361 185 HOH HOH . F 5 HOH A 141 362 186 HOH HOH . F 5 HOH A 142 363 188 HOH HOH . F 5 HOH A 143 364 190 HOH HOH . F 5 HOH A 144 365 191 HOH HOH . F 5 HOH A 145 366 192 HOH HOH . F 5 HOH A 146 367 193 HOH HOH . F 5 HOH A 147 368 194 HOH HOH . F 5 HOH A 148 369 195 HOH HOH . F 5 HOH A 149 370 196 HOH HOH . F 5 HOH A 150 371 197 HOH HOH . F 5 HOH A 151 372 198 HOH HOH . F 5 HOH A 152 373 200 HOH HOH . F 5 HOH A 153 374 201 HOH HOH . F 5 HOH A 154 375 202 HOH HOH . F 5 HOH A 155 376 203 HOH HOH . F 5 HOH A 156 377 208 HOH HOH . F 5 HOH A 157 378 209 HOH HOH . F 5 HOH A 158 379 211 HOH HOH . F 5 HOH A 159 380 212 HOH HOH . F 5 HOH A 160 381 213 HOH HOH . F 5 HOH A 161 382 215 HOH HOH . F 5 HOH A 162 383 218 HOH HOH . F 5 HOH A 163 384 219 HOH HOH . F 5 HOH A 164 385 220 HOH HOH . F 5 HOH A 165 386 221 HOH HOH . F 5 HOH A 166 387 225 HOH HOH . F 5 HOH A 167 388 226 HOH HOH . F 5 HOH A 168 389 228 HOH HOH . F 5 HOH A 169 390 229 HOH HOH . F 5 HOH A 170 391 230 HOH HOH . F 5 HOH A 171 392 231 HOH HOH . F 5 HOH A 172 393 233 HOH HOH . F 5 HOH A 173 394 234 HOH HOH . F 5 HOH A 174 395 235 HOH HOH . F 5 HOH A 175 396 237 HOH HOH . F 5 HOH A 176 397 238 HOH HOH . F 5 HOH A 177 398 241 HOH HOH . F 5 HOH A 178 399 242 HOH HOH . F 5 HOH A 179 400 243 HOH HOH . F 5 HOH A 180 401 244 HOH HOH . F 5 HOH A 181 402 245 HOH HOH . F 5 HOH A 182 403 246 HOH HOH . F 5 HOH A 183 404 247 HOH HOH . F 5 HOH A 184 405 248 HOH HOH . F 5 HOH A 185 406 249 HOH HOH . F 5 HOH A 186 407 250 HOH HOH . F 5 HOH A 187 408 251 HOH HOH . F 5 HOH A 188 409 252 HOH HOH . F 5 HOH A 189 410 253 HOH HOH . F 5 HOH A 190 411 254 HOH HOH . F 5 HOH A 191 412 255 HOH HOH . F 5 HOH A 192 413 256 HOH HOH . F 5 HOH A 193 414 257 HOH HOH . F 5 HOH A 194 415 1 HOH HOH . F 5 HOH A 195 416 2 HOH HOH . F 5 HOH A 196 417 3 HOH HOH . F 5 HOH A 197 418 5 HOH HOH . F 5 HOH A 198 419 6 HOH HOH . F 5 HOH A 199 420 7 HOH HOH . F 5 HOH A 200 421 8 HOH HOH . F 5 HOH A 201 422 9 HOH HOH . F 5 HOH A 202 423 10 HOH HOH . F 5 HOH A 203 424 11 HOH HOH . F 5 HOH A 204 425 12 HOH HOH . F 5 HOH A 205 426 13 HOH HOH . F 5 HOH A 206 427 14 HOH HOH . F 5 HOH A 207 428 21 HOH HOH . F 5 HOH A 208 429 22 HOH HOH . F 5 HOH A 209 430 23 HOH HOH . F 5 HOH A 210 431 24 HOH HOH . F 5 HOH A 211 432 25 HOH HOH . F 5 HOH A 212 433 26 HOH HOH . F 5 HOH A 213 434 27 HOH HOH . F 5 HOH A 214 435 28 HOH HOH . F 5 HOH A 215 436 29 HOH HOH . F 5 HOH A 216 437 31 HOH HOH . F 5 HOH A 217 438 33 HOH HOH . F 5 HOH A 218 439 35 HOH HOH . F 5 HOH A 219 440 37 HOH HOH . F 5 HOH A 220 441 40 HOH HOH . F 5 HOH A 221 442 41 HOH HOH . F 5 HOH A 222 443 45 HOH HOH . F 5 HOH A 223 444 51 HOH HOH . F 5 HOH A 224 445 60 HOH HOH . F 5 HOH A 225 446 71 HOH HOH . F 5 HOH A 226 447 117 HOH HOH . F 5 HOH A 227 448 140 HOH HOH . F 5 HOH A 228 449 168 HOH HOH . F 5 HOH A 229 450 169 HOH HOH . F 5 HOH A 230 451 170 HOH HOH . F 5 HOH A 231 452 171 HOH HOH . F 5 HOH A 232 453 172 HOH HOH . F 5 HOH A 233 454 173 HOH HOH . F 5 HOH A 234 455 175 HOH HOH . F 5 HOH A 235 456 178 HOH HOH . F 5 HOH A 236 457 190 HOH HOH . F 5 HOH A 237 458 197 HOH HOH . F 5 HOH A 238 459 199 HOH HOH . F 5 HOH A 239 460 1 HOH HOH . F 5 HOH A 240 461 2 HOH HOH . F 5 HOH A 241 462 3 HOH HOH . F 5 HOH A 242 463 4 HOH HOH . F 5 HOH A 243 464 5 HOH HOH . F 5 HOH A 244 465 12 HOH HOH . F 5 HOH A 245 466 14 HOH HOH . F 5 HOH A 246 467 29 HOH HOH . F 5 HOH A 247 468 31 HOH HOH . F 5 HOH A 248 469 32 HOH HOH . F 5 HOH A 249 470 33 HOH HOH . F 5 HOH A 250 471 38 HOH HOH . F 5 HOH A 251 472 49 HOH HOH . F 5 HOH A 252 473 67 HOH HOH . F 5 HOH A 253 474 138 HOH HOH . F 5 HOH A 254 475 175 HOH HOH . F 5 HOH A 255 476 187 HOH HOH . F 5 HOH A 256 477 188 HOH HOH . F 5 HOH A 257 478 189 HOH HOH . F 5 HOH A 258 479 208 HOH HOH . F 5 HOH A 259 480 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 15.038 3.865 81.862 1 49.93 ? C1 GOL 221 A 1 HETATM 2 O O1 GOL . . . E 4 14.596 4.975 81.103 1 42.58 ? O1 GOL 221 A 1 HETATM 3 C C2 GOL . . . E 4 15.742 2.76 81.066 1 49.06 ? C2 GOL 221 A 1 HETATM 4 O O2 GOL . . . E 4 16.996 3.224 80.653 1 50.3 ? O2 GOL 221 A 1 HETATM 5 C C3 GOL . . . E 4 16.024 1.562 82.004 1 45.42 ? C3 GOL 221 A 1 HETATM 6 O O3 GOL . . . E 4 14.899 0.667 82.052 1 54.56 ? O3 GOL 221 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #