data_3BEA # _model_server_result.job_id Vhf-bjm105Tn5J_d6d8Qmw _model_server_result.datetime_utc '2024-10-16 10:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":923}' # _entry.id 3BEA # _exptl.entry_id 3BEA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.602 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-(2,3-dihydro-1H-inden-5-yl)-2-({4-[(3R,5S)-3,5-dimethylpiperazin-1-yl]phenyl}amino)-5-oxo-5,8-dihydropyrido[2,3-d]pyrimidine-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BEA _cell.length_a 81.14 _cell.length_b 81.14 _cell.length_c 145.65 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H31 N7 O2' _chem_comp.formula_weight 509.602 _chem_comp.id IXH _chem_comp.mon_nstd_flag . _chem_comp.name 8-(2,3-dihydro-1H-inden-5-yl)-2-({4-[(3R,5S)-3,5-dimethylpiperazin-1-yl]phenyl}amino)-5-oxo-5,8-dihydropyrido[2,3-d]pyrimidine-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IXH sing 173 n n C1 H1 IXH sing 174 n n C1 H1A IXH sing 175 n n C1 H1B IXH sing 176 n n C2 C3 IXH sing 177 n n C2 N6 IXH sing 178 n n C2 H2 IXH sing 179 n n C3 N1 IXH sing 180 n n C3 H3 IXH sing 181 n n C3 H3A IXH sing 182 n n C4 C5 IXH sing 183 n n N1 C4 IXH sing 184 n n C4 H4 IXH sing 185 n n C4 H4A IXH sing 186 n n C5 C6 IXH sing 187 n n N6 C5 IXH sing 188 n n C5 H5 IXH sing 189 n n C6 H6 IXH sing 190 n n C6 H6A IXH sing 191 n n C6 H6B IXH sing 192 n n C8 C7 IXH doub 193 n y N1 C7 IXH sing 194 n n C7 C12 IXH sing 195 n y C8 C9 IXH sing 196 n y C8 H8 IXH sing 197 n n C9 C10 IXH doub 198 n y C9 H9 IXH sing 199 n n C10 N5 IXH sing 200 n n C10 C11 IXH sing 201 n y C12 C11 IXH doub 202 n y C11 H11 IXH sing 203 n n C12 H12 IXH sing 204 n n N4 C13 IXH doub 205 n y C13 N5 IXH sing 206 n n C13 N2 IXH sing 207 n y C15 C14 IXH sing 208 n y C14 N2 IXH doub 209 n y C14 H14 IXH sing 210 n n C16 C15 IXH sing 211 n n C28 C15 IXH doub 212 n y C17 C16 IXH sing 213 n n C16 O1 IXH doub 214 n n C29 C17 IXH sing 215 n n C18 C17 IXH doub 216 n n C18 N3 IXH sing 217 n n C18 H18 IXH sing 218 n n C27 C19 IXH doub 219 n y C19 C20 IXH sing 220 n y C19 N3 IXH sing 221 n n C21 C20 IXH doub 222 n y C20 H20 IXH sing 223 n n C22 C21 IXH sing 224 n y C21 H21 IXH sing 225 n n C23 C22 IXH sing 226 n n C26 C22 IXH doub 227 n y C24 C23 IXH sing 228 n n C23 H23 IXH sing 229 n n C23 H23A IXH sing 230 n n C24 C25 IXH sing 231 n n C24 H24 IXH sing 232 n n C24 H24A IXH sing 233 n n C25 C26 IXH sing 234 n n C25 H25 IXH sing 235 n n C25 H25A IXH sing 236 n n C26 C27 IXH sing 237 n y C27 H27 IXH sing 238 n n N3 C28 IXH sing 239 n n C28 N4 IXH sing 240 n y O2 C29 IXH doub 241 n n C29 N7 IXH sing 242 n n N5 HN5 IXH sing 243 n n N6 HN6 IXH sing 244 n n N7 HN7 IXH sing 245 n n N7 HN7A IXH sing 246 n n # _atom_sites.entry_id 3BEA _atom_sites.fract_transf_matrix[1][1] 0.012324 _atom_sites.fract_transf_matrix[1][2] 0.007115 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 2 SO4 A 1 2 2 SO4 SO4 . D 2 SO4 A 1 4 4 SO4 SO4 . E 3 IXH A 1 923 1 IXH IXH . F 4 HOH A 1 924 1 HOH HOH . F 4 HOH A 2 925 2 HOH HOH . F 4 HOH A 3 926 3 HOH HOH . F 4 HOH A 4 927 5 HOH HOH . F 4 HOH A 5 928 6 HOH HOH . F 4 HOH A 6 929 7 HOH HOH . F 4 HOH A 7 930 8 HOH HOH . F 4 HOH A 8 931 9 HOH HOH . F 4 HOH A 9 932 10 HOH HOH . F 4 HOH A 10 933 11 HOH HOH . F 4 HOH A 11 934 12 HOH HOH . F 4 HOH A 12 935 13 HOH HOH . F 4 HOH A 13 936 14 HOH HOH . F 4 HOH A 14 937 15 HOH HOH . F 4 HOH A 15 938 16 HOH HOH . F 4 HOH A 16 939 17 HOH HOH . F 4 HOH A 17 940 18 HOH HOH . F 4 HOH A 18 941 19 HOH HOH . F 4 HOH A 19 942 20 HOH HOH . F 4 HOH A 20 943 21 HOH HOH . F 4 HOH A 21 944 22 HOH HOH . F 4 HOH A 22 945 23 HOH HOH . F 4 HOH A 23 946 24 HOH HOH . F 4 HOH A 24 947 27 HOH HOH . F 4 HOH A 25 948 28 HOH HOH . F 4 HOH A 26 949 30 HOH HOH . F 4 HOH A 27 950 31 HOH HOH . F 4 HOH A 28 951 32 HOH HOH . F 4 HOH A 29 952 34 HOH HOH . F 4 HOH A 30 953 35 HOH HOH . F 4 HOH A 31 954 36 HOH HOH . F 4 HOH A 32 955 37 HOH HOH . F 4 HOH A 33 956 38 HOH HOH . F 4 HOH A 34 957 39 HOH HOH . F 4 HOH A 35 958 40 HOH HOH . F 4 HOH A 36 959 41 HOH HOH . F 4 HOH A 37 960 42 HOH HOH . F 4 HOH A 38 961 45 HOH HOH . F 4 HOH A 39 962 46 HOH HOH . F 4 HOH A 40 963 47 HOH HOH . F 4 HOH A 41 964 50 HOH HOH . F 4 HOH A 42 965 51 HOH HOH . F 4 HOH A 43 966 53 HOH HOH . F 4 HOH A 44 967 54 HOH HOH . F 4 HOH A 45 968 55 HOH HOH . F 4 HOH A 46 969 56 HOH HOH . F 4 HOH A 47 970 57 HOH HOH . F 4 HOH A 48 971 58 HOH HOH . F 4 HOH A 49 972 59 HOH HOH . F 4 HOH A 50 973 60 HOH HOH . F 4 HOH A 51 974 61 HOH HOH . F 4 HOH A 52 975 62 HOH HOH . F 4 HOH A 53 976 63 HOH HOH . F 4 HOH A 54 977 64 HOH HOH . F 4 HOH A 55 978 65 HOH HOH . F 4 HOH A 56 979 66 HOH HOH . F 4 HOH A 57 980 67 HOH HOH . F 4 HOH A 58 981 68 HOH HOH . F 4 HOH A 59 982 69 HOH HOH . F 4 HOH A 60 983 70 HOH HOH . F 4 HOH A 61 984 71 HOH HOH . F 4 HOH A 62 985 72 HOH HOH . F 4 HOH A 63 986 73 HOH HOH . F 4 HOH A 64 987 74 HOH HOH . F 4 HOH A 65 988 75 HOH HOH . F 4 HOH A 66 989 76 HOH HOH . F 4 HOH A 67 990 77 HOH HOH . F 4 HOH A 68 991 78 HOH HOH . F 4 HOH A 69 992 79 HOH HOH . F 4 HOH A 70 993 80 HOH HOH . F 4 HOH A 71 994 81 HOH HOH . F 4 HOH A 72 995 82 HOH HOH . F 4 HOH A 73 996 83 HOH HOH . F 4 HOH A 74 997 84 HOH HOH . F 4 HOH A 75 998 85 HOH HOH . F 4 HOH A 76 999 86 HOH HOH . F 4 HOH A 77 1000 87 HOH HOH . F 4 HOH A 78 1001 88 HOH HOH . F 4 HOH A 79 1002 89 HOH HOH . F 4 HOH A 80 1003 90 HOH HOH . F 4 HOH A 81 1004 91 HOH HOH . F 4 HOH A 82 1005 92 HOH HOH . F 4 HOH A 83 1006 93 HOH HOH . F 4 HOH A 84 1007 94 HOH HOH . F 4 HOH A 85 1008 95 HOH HOH . F 4 HOH A 86 1009 96 HOH HOH . F 4 HOH A 87 1010 97 HOH HOH . F 4 HOH A 88 1011 98 HOH HOH . F 4 HOH A 89 1012 99 HOH HOH . F 4 HOH A 90 1013 100 HOH HOH . F 4 HOH A 91 1014 101 HOH HOH . F 4 HOH A 92 1015 102 HOH HOH . F 4 HOH A 93 1016 103 HOH HOH . F 4 HOH A 94 1017 104 HOH HOH . F 4 HOH A 95 1018 106 HOH HOH . F 4 HOH A 96 1019 107 HOH HOH . F 4 HOH A 97 1020 110 HOH HOH . F 4 HOH A 98 1021 114 HOH HOH . F 4 HOH A 99 1022 115 HOH HOH . F 4 HOH A 100 1023 116 HOH HOH . F 4 HOH A 101 1024 117 HOH HOH . F 4 HOH A 102 1025 118 HOH HOH . F 4 HOH A 103 1026 119 HOH HOH . F 4 HOH A 104 1027 120 HOH HOH . F 4 HOH A 105 1028 121 HOH HOH . F 4 HOH A 106 1029 122 HOH HOH . F 4 HOH A 107 1030 123 HOH HOH . F 4 HOH A 108 1031 124 HOH HOH . F 4 HOH A 109 1032 125 HOH HOH . F 4 HOH A 110 1033 126 HOH HOH . F 4 HOH A 111 1034 129 HOH HOH . F 4 HOH A 112 1035 130 HOH HOH . F 4 HOH A 113 1036 131 HOH HOH . F 4 HOH A 114 1037 132 HOH HOH . F 4 HOH A 115 1038 133 HOH HOH . F 4 HOH A 116 1039 134 HOH HOH . F 4 HOH A 117 1040 135 HOH HOH . F 4 HOH A 118 1041 136 HOH HOH . F 4 HOH A 119 1042 137 HOH HOH . F 4 HOH A 120 1043 138 HOH HOH . F 4 HOH A 121 1044 139 HOH HOH . F 4 HOH A 122 1045 141 HOH HOH . F 4 HOH A 123 1046 143 HOH HOH . F 4 HOH A 124 1047 144 HOH HOH . F 4 HOH A 125 1048 145 HOH HOH . F 4 HOH A 126 1049 146 HOH HOH . F 4 HOH A 127 1050 147 HOH HOH . F 4 HOH A 128 1051 148 HOH HOH . F 4 HOH A 129 1052 149 HOH HOH . F 4 HOH A 130 1053 150 HOH HOH . F 4 HOH A 131 1054 151 HOH HOH . F 4 HOH A 132 1055 152 HOH HOH . F 4 HOH A 133 1056 153 HOH HOH . F 4 HOH A 134 1057 155 HOH HOH . F 4 HOH A 135 1058 157 HOH HOH . F 4 HOH A 136 1059 158 HOH HOH . F 4 HOH A 137 1060 159 HOH HOH . F 4 HOH A 138 1061 160 HOH HOH . F 4 HOH A 139 1062 163 HOH HOH . F 4 HOH A 140 1063 164 HOH HOH . F 4 HOH A 141 1064 165 HOH HOH . F 4 HOH A 142 1065 166 HOH HOH . F 4 HOH A 143 1066 167 HOH HOH . F 4 HOH A 144 1067 168 HOH HOH . F 4 HOH A 145 1068 169 HOH HOH . F 4 HOH A 146 1069 170 HOH HOH . F 4 HOH A 147 1070 171 HOH HOH . F 4 HOH A 148 1071 172 HOH HOH . F 4 HOH A 149 1072 174 HOH HOH . F 4 HOH A 150 1073 175 HOH HOH . F 4 HOH A 151 1074 177 HOH HOH . F 4 HOH A 152 1075 180 HOH HOH . F 4 HOH A 153 1076 181 HOH HOH . F 4 HOH A 154 1077 183 HOH HOH . F 4 HOH A 155 1078 184 HOH HOH . F 4 HOH A 156 1079 185 HOH HOH . F 4 HOH A 157 1080 186 HOH HOH . F 4 HOH A 158 1081 188 HOH HOH . F 4 HOH A 159 1082 193 HOH HOH . F 4 HOH A 160 1083 197 HOH HOH . F 4 HOH A 161 1084 198 HOH HOH . F 4 HOH A 162 1085 200 HOH HOH . F 4 HOH A 163 1086 203 HOH HOH . F 4 HOH A 164 1087 206 HOH HOH . F 4 HOH A 165 1088 214 HOH HOH . F 4 HOH A 166 1089 215 HOH HOH . F 4 HOH A 167 1090 216 HOH HOH . F 4 HOH A 168 1091 217 HOH HOH . F 4 HOH A 169 1092 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IXH . . . E 3 -0.569 33.661 5.679 1 30.19 ? C1 IXH 923 A 1 HETATM 2 C C2 IXH . . . E 3 0.343 33.746 6.897 1 28.35 ? C2 IXH 923 A 1 HETATM 3 C C3 IXH . . . E 3 1.455 32.654 6.831 1 28.38 ? C3 IXH 923 A 1 HETATM 4 C C4 IXH . . . E 3 2.96 34.13 8.116 1 27.97 ? C4 IXH 923 A 1 HETATM 5 C C5 IXH . . . E 3 1.842 35.21 8.172 1 28.56 ? C5 IXH 923 A 1 HETATM 6 C C6 IXH . . . E 3 2.449 36.61 8.246 1 28.83 ? C6 IXH 923 A 1 HETATM 7 C C7 IXH . . . E 3 3.26 31.742 8.236 1 22.53 ? C7 IXH 923 A 1 HETATM 8 C C8 IXH . . . E 3 3.795 30.908 7.195 1 21.25 ? C8 IXH 923 A 1 HETATM 9 C C9 IXH . . . E 3 4.732 29.866 7.477 1 18.31 ? C9 IXH 923 A 1 HETATM 10 C C10 IXH . . . E 3 5.183 29.612 8.807 1 18.74 ? C10 IXH 923 A 1 HETATM 11 C C11 IXH . . . E 3 4.657 30.429 9.837 1 20.22 ? C11 IXH 923 A 1 HETATM 12 C C12 IXH . . . E 3 3.723 31.465 9.561 1 21.34 ? C12 IXH 923 A 1 HETATM 13 C C13 IXH . . . E 3 6.629 27.498 8.558 1 17.76 ? C13 IXH 923 A 1 HETATM 14 C C14 IXH . . . E 3 7.876 25.536 8.508 1 18.56 ? C14 IXH 923 A 1 HETATM 15 C C15 IXH . . . E 3 7.586 25.315 7.16 1 19.92 ? C15 IXH 923 A 1 HETATM 16 C C16 IXH . . . E 3 8.099 24.145 6.406 1 20.18 ? C16 IXH 923 A 1 HETATM 17 C C17 IXH . . . E 3 7.715 24.02 4.953 1 19.05 ? C17 IXH 923 A 1 HETATM 18 C C18 IXH . . . E 3 6.925 25.002 4.445 1 19.23 ? C18 IXH 923 A 1 HETATM 19 C C19 IXH . . . E 3 5.62 27.093 4.441 1 20.93 ? C19 IXH 923 A 1 HETATM 20 C C20 IXH . . . E 3 4.213 27.246 4.698 1 20.42 ? C20 IXH 923 A 1 HETATM 21 C C21 IXH . . . E 3 3.435 28.224 3.997 1 23.44 ? C21 IXH 923 A 1 HETATM 22 C C22 IXH . . . E 3 4.069 29.04 3.039 1 22.36 ? C22 IXH 923 A 1 HETATM 23 C C23 IXH . . . E 3 3.466 30.121 2.192 1 24.08 ? C23 IXH 923 A 1 HETATM 24 C C24 IXH . . . E 3 4.536 30.289 1.098 1 25.11 ? C24 IXH 923 A 1 HETATM 25 C C25 IXH . . . E 3 5.887 29.878 1.715 1 24.79 ? C25 IXH 923 A 1 HETATM 26 C C26 IXH . . . E 3 5.45 28.904 2.767 1 22.57 ? C26 IXH 923 A 1 HETATM 27 C C27 IXH . . . E 3 6.234 27.948 3.45 1 20.74 ? C27 IXH 923 A 1 HETATM 28 C C28 IXH . . . E 3 6.771 26.282 6.543 1 19.79 ? C28 IXH 923 A 1 HETATM 29 C C29 IXH . . . E 3 8.14 22.919 4.041 1 19.85 ? C29 IXH 923 A 1 HETATM 30 N N1 IXH . . . E 3 2.328 32.786 8.03 1 27.15 ? N1 IXH 923 A 1 HETATM 31 N N2 IXH . . . E 3 7.41 26.609 9.213 1 17.28 ? N2 IXH 923 A 1 HETATM 32 N N3 IXH . . . E 3 6.428 26.128 5.134 1 18.95 ? N3 IXH 923 A 1 HETATM 33 N N4 IXH . . . E 3 6.309 27.351 7.253 1 16.8 ? N4 IXH 923 A 1 HETATM 34 N N5 IXH . . . E 3 6.086 28.603 9.181 1 17.2 ? N5 IXH 923 A 1 HETATM 35 N N6 IXH . . . E 3 0.94 35.125 6.974 1 29.05 ? N6 IXH 923 A 1 HETATM 36 N N7 IXH . . . E 3 8.949 21.96 4.581 1 15.95 ? N7 IXH 923 A 1 HETATM 37 O O1 IXH . . . E 3 8.812 23.317 6.972 1 22.19 ? O1 IXH 923 A 1 HETATM 38 O O2 IXH . . . E 3 7.8 22.86 2.86 1 17.15 ? O2 IXH 923 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 38 #