data_3BEB # _model_server_result.job_id WOpAT8skZyDjgMS4j_TOGg _model_server_result.datetime_utc '2025-01-10 16:11:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3beb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 3BEB # _exptl.entry_id 3BEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(1R)-1-{[(6S)-6-amino-6-carboxyhexanoyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.8 _cell.angle_gamma 90 _cell.entry_id 3BEB _cell.length_a 109.2 _cell.length_b 50.4 _cell.length_c 84.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 44 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C7 _struct_conn.ptnr2_label_comp_id HJ3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HJ3 _struct_conn.ptnr2_auth_seq_id 1000 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.386 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H25 N3 O6 S' _chem_comp.formula_weight 375.441 _chem_comp.id HJ3 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(1R)-1-{[(6S)-6-amino-6-carboxyhexanoyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C10 HJ3 doub 163 n n C10 CA1 HJ3 sing 164 n n CA1 CB1 HJ3 sing 165 n n CA1 HA1 HJ3 sing 166 n n CA1 HA1A HJ3 sing 167 n n CB1 C121 HJ3 sing 168 n n CB1 HB1 HJ3 sing 169 n n CB1 HB1A HJ3 sing 170 n n N9 C10 HJ3 sing 171 n n N9 HN9 HJ3 sing 172 n n C6 N9 HJ3 sing 173 n n C6 C5 HJ3 sing 174 n n C6 H6 HJ3 sing 175 n n C7 C6 HJ3 sing 176 n n C7 O8 HJ3 doub 177 n n C7 H7 HJ3 sing 178 n n C5 S1 HJ3 sing 179 n n C5 H5 HJ3 sing 180 n n S1 C2 HJ3 sing 181 n n N4 C5 HJ3 sing 182 n n N4 C3 HJ3 sing 183 n n N4 HN4 HJ3 sing 184 n n C3 C2 HJ3 sing 185 n n C3 H3 HJ3 sing 186 n n C12 C3 HJ3 sing 187 n n C12 O14 HJ3 sing 188 n n O14 HO14 HJ3 sing 189 n n O13 C12 HJ3 doub 190 n n C2 C15 HJ3 sing 191 n n C2 C16 HJ3 sing 192 n n C16 H16 HJ3 sing 193 n n C16 H16A HJ3 sing 194 n n C16 H16B HJ3 sing 195 n n C15 H15 HJ3 sing 196 n n C15 H15A HJ3 sing 197 n n C15 H15B HJ3 sing 198 n n C121 C13 HJ3 sing 199 n n C121 H18 HJ3 sing 200 n n C121 H19 HJ3 sing 201 n n C13 H20 HJ3 sing 202 n n C13 H21 HJ3 sing 203 n n C13 C14 HJ3 sing 204 n n C14 C151 HJ3 sing 205 n n C14 N3 HJ3 sing 206 n n C14 H22 HJ3 sing 207 n n O5 C151 HJ3 sing 208 n n C151 O6 HJ3 doub 209 n n O5 H23 HJ3 sing 210 n n N3 H24 HJ3 sing 211 n n N3 H25 HJ3 sing 212 n n # _atom_sites.entry_id 3BEB _atom_sites.fract_transf_matrix[1][1] 0.009158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005459 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HJ3 A 1 1000 1000 HJ3 HJ3 . C 3 GOL A 1 365 365 GOL GOL . D 4 HOH A 1 366 366 HOH HOH . D 4 HOH A 2 367 367 HOH HOH . D 4 HOH A 3 368 368 HOH HOH . D 4 HOH A 4 369 369 HOH HOH . D 4 HOH A 5 370 370 HOH HOH . D 4 HOH A 6 371 371 HOH HOH . D 4 HOH A 7 372 372 HOH HOH . D 4 HOH A 8 373 373 HOH HOH . D 4 HOH A 9 374 374 HOH HOH . D 4 HOH A 10 375 375 HOH HOH . D 4 HOH A 11 376 376 HOH HOH . D 4 HOH A 12 377 377 HOH HOH . D 4 HOH A 13 378 378 HOH HOH . D 4 HOH A 14 379 379 HOH HOH . D 4 HOH A 15 380 380 HOH HOH . D 4 HOH A 16 381 381 HOH HOH . D 4 HOH A 17 382 382 HOH HOH . D 4 HOH A 18 383 383 HOH HOH . D 4 HOH A 19 384 384 HOH HOH . D 4 HOH A 20 385 385 HOH HOH . D 4 HOH A 21 386 386 HOH HOH . D 4 HOH A 22 387 387 HOH HOH . D 4 HOH A 23 388 388 HOH HOH . D 4 HOH A 24 389 389 HOH HOH . D 4 HOH A 25 390 390 HOH HOH . D 4 HOH A 26 391 391 HOH HOH . D 4 HOH A 27 392 392 HOH HOH . D 4 HOH A 28 393 393 HOH HOH . D 4 HOH A 29 394 394 HOH HOH . D 4 HOH A 30 395 395 HOH HOH . D 4 HOH A 31 396 396 HOH HOH . D 4 HOH A 32 397 397 HOH HOH . D 4 HOH A 33 398 398 HOH HOH . D 4 HOH A 34 399 399 HOH HOH . D 4 HOH A 35 400 400 HOH HOH . D 4 HOH A 36 401 401 HOH HOH . D 4 HOH A 37 402 402 HOH HOH . D 4 HOH A 38 403 403 HOH HOH . D 4 HOH A 39 404 404 HOH HOH . D 4 HOH A 40 405 405 HOH HOH . D 4 HOH A 41 406 406 HOH HOH . D 4 HOH A 42 407 407 HOH HOH . D 4 HOH A 43 408 408 HOH HOH . D 4 HOH A 44 409 409 HOH HOH . D 4 HOH A 45 410 410 HOH HOH . D 4 HOH A 46 411 411 HOH HOH . D 4 HOH A 47 412 412 HOH HOH . D 4 HOH A 48 413 413 HOH HOH . D 4 HOH A 49 414 414 HOH HOH . D 4 HOH A 50 415 415 HOH HOH . D 4 HOH A 51 416 416 HOH HOH . D 4 HOH A 52 417 417 HOH HOH . D 4 HOH A 53 418 418 HOH HOH . D 4 HOH A 54 419 419 HOH HOH . D 4 HOH A 55 420 420 HOH HOH . D 4 HOH A 56 421 421 HOH HOH . D 4 HOH A 57 422 422 HOH HOH . D 4 HOH A 58 423 423 HOH HOH . D 4 HOH A 59 424 424 HOH HOH . D 4 HOH A 60 425 425 HOH HOH . D 4 HOH A 61 426 426 HOH HOH . D 4 HOH A 62 427 427 HOH HOH . D 4 HOH A 63 428 428 HOH HOH . D 4 HOH A 64 429 429 HOH HOH . D 4 HOH A 65 430 430 HOH HOH . D 4 HOH A 66 431 431 HOH HOH . D 4 HOH A 67 432 432 HOH HOH . D 4 HOH A 68 433 433 HOH HOH . D 4 HOH A 69 434 434 HOH HOH . D 4 HOH A 70 435 435 HOH HOH . D 4 HOH A 71 436 436 HOH HOH . D 4 HOH A 72 437 437 HOH HOH . D 4 HOH A 73 438 438 HOH HOH . D 4 HOH A 74 439 439 HOH HOH . D 4 HOH A 75 440 440 HOH HOH . D 4 HOH A 76 441 441 HOH HOH . D 4 HOH A 77 442 442 HOH HOH . D 4 HOH A 78 443 443 HOH HOH . D 4 HOH A 79 444 444 HOH HOH . D 4 HOH A 80 445 445 HOH HOH . D 4 HOH A 81 446 446 HOH HOH . D 4 HOH A 82 447 447 HOH HOH . D 4 HOH A 83 448 448 HOH HOH . D 4 HOH A 84 449 449 HOH HOH . D 4 HOH A 85 450 450 HOH HOH . D 4 HOH A 86 451 451 HOH HOH . D 4 HOH A 87 452 452 HOH HOH . D 4 HOH A 88 453 453 HOH HOH . D 4 HOH A 89 454 454 HOH HOH . D 4 HOH A 90 455 455 HOH HOH . D 4 HOH A 91 456 456 HOH HOH . D 4 HOH A 92 457 457 HOH HOH . D 4 HOH A 93 458 458 HOH HOH . D 4 HOH A 94 459 459 HOH HOH . D 4 HOH A 95 460 460 HOH HOH . D 4 HOH A 96 461 461 HOH HOH . D 4 HOH A 97 462 462 HOH HOH . D 4 HOH A 98 463 463 HOH HOH . D 4 HOH A 99 464 464 HOH HOH . D 4 HOH A 100 465 465 HOH HOH . D 4 HOH A 101 466 466 HOH HOH . D 4 HOH A 102 467 467 HOH HOH . D 4 HOH A 103 468 468 HOH HOH . D 4 HOH A 104 469 469 HOH HOH . D 4 HOH A 105 470 470 HOH HOH . D 4 HOH A 106 471 471 HOH HOH . D 4 HOH A 107 472 472 HOH HOH . D 4 HOH A 108 473 473 HOH HOH . D 4 HOH A 109 474 474 HOH HOH . D 4 HOH A 110 475 475 HOH HOH . D 4 HOH A 111 476 476 HOH HOH . D 4 HOH A 112 477 477 HOH HOH . D 4 HOH A 113 478 478 HOH HOH . D 4 HOH A 114 479 479 HOH HOH . D 4 HOH A 115 480 480 HOH HOH . D 4 HOH A 116 481 481 HOH HOH . D 4 HOH A 117 482 482 HOH HOH . D 4 HOH A 118 483 483 HOH HOH . D 4 HOH A 119 484 484 HOH HOH . D 4 HOH A 120 485 485 HOH HOH . D 4 HOH A 121 486 486 HOH HOH . D 4 HOH A 122 487 487 HOH HOH . D 4 HOH A 123 488 488 HOH HOH . D 4 HOH A 124 489 489 HOH HOH . D 4 HOH A 125 490 490 HOH HOH . D 4 HOH A 126 491 491 HOH HOH . D 4 HOH A 127 492 492 HOH HOH . D 4 HOH A 128 493 493 HOH HOH . D 4 HOH A 129 494 494 HOH HOH . D 4 HOH A 130 495 495 HOH HOH . D 4 HOH A 131 496 496 HOH HOH . D 4 HOH A 132 497 497 HOH HOH . D 4 HOH A 133 498 498 HOH HOH . D 4 HOH A 134 499 499 HOH HOH . D 4 HOH A 135 500 500 HOH HOH . D 4 HOH A 136 501 501 HOH HOH . D 4 HOH A 137 502 502 HOH HOH . D 4 HOH A 138 503 503 HOH HOH . D 4 HOH A 139 504 504 HOH HOH . D 4 HOH A 140 505 505 HOH HOH . D 4 HOH A 141 506 506 HOH HOH . D 4 HOH A 142 507 507 HOH HOH . D 4 HOH A 143 508 508 HOH HOH . D 4 HOH A 144 509 509 HOH HOH . D 4 HOH A 145 510 510 HOH HOH . D 4 HOH A 146 511 511 HOH HOH . D 4 HOH A 147 512 512 HOH HOH . D 4 HOH A 148 513 513 HOH HOH . D 4 HOH A 149 514 514 HOH HOH . D 4 HOH A 150 515 515 HOH HOH . D 4 HOH A 151 516 516 HOH HOH . D 4 HOH A 152 517 517 HOH HOH . D 4 HOH A 153 518 518 HOH HOH . D 4 HOH A 154 519 519 HOH HOH . D 4 HOH A 155 520 520 HOH HOH . D 4 HOH A 156 521 521 HOH HOH . D 4 HOH A 157 522 522 HOH HOH . D 4 HOH A 158 523 523 HOH HOH . D 4 HOH A 159 524 524 HOH HOH . D 4 HOH A 160 525 525 HOH HOH . D 4 HOH A 161 526 526 HOH HOH . D 4 HOH A 162 527 527 HOH HOH . D 4 HOH A 163 528 528 HOH HOH . D 4 HOH A 164 529 529 HOH HOH . D 4 HOH A 165 530 530 HOH HOH . D 4 HOH A 166 531 531 HOH HOH . D 4 HOH A 167 532 532 HOH HOH . D 4 HOH A 168 533 533 HOH HOH . D 4 HOH A 169 534 534 HOH HOH . D 4 HOH A 170 535 535 HOH HOH . D 4 HOH A 171 536 536 HOH HOH . D 4 HOH A 172 537 537 HOH HOH . D 4 HOH A 173 538 538 HOH HOH . D 4 HOH A 174 539 539 HOH HOH . D 4 HOH A 175 540 540 HOH HOH . D 4 HOH A 176 541 541 HOH HOH . D 4 HOH A 177 542 542 HOH HOH . D 4 HOH A 178 543 543 HOH HOH . D 4 HOH A 179 544 544 HOH HOH . D 4 HOH A 180 545 545 HOH HOH . D 4 HOH A 181 546 546 HOH HOH . D 4 HOH A 182 547 547 HOH HOH . D 4 HOH A 183 548 548 HOH HOH . D 4 HOH A 184 549 549 HOH HOH . D 4 HOH A 185 550 550 HOH HOH . D 4 HOH A 186 551 551 HOH HOH . D 4 HOH A 187 552 552 HOH HOH . D 4 HOH A 188 553 553 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 HJ3 . . . B 2 41.741 8.83 30.459 0.8 34.98 ? O11 HJ3 1000 A 1 HETATM 2 C C10 HJ3 . . . B 2 41.455 7.648 30.652 0.8 34.93 ? C10 HJ3 1000 A 1 HETATM 3 C CA1 HJ3 . . . B 2 40.596 7.277 31.849 0.8 34.85 ? CA1 HJ3 1000 A 1 HETATM 4 C CB1 HJ3 . . . B 2 41.244 6.2 32.693 0.8 36 ? CB1 HJ3 1000 A 1 HETATM 5 N N9 HJ3 . . . B 2 41.872 6.658 29.847 0.8 33.39 ? N9 HJ3 1000 A 1 HETATM 6 C C6 HJ3 . . . B 2 42.693 6.947 28.66 0.8 31.96 ? C6 HJ3 1000 A 1 HETATM 7 C C7 HJ3 . . . B 2 42.084 6.376 27.406 0.8 29.15 ? C7 HJ3 1000 A 1 HETATM 8 O O8 HJ3 . . . B 2 41.285 5.435 27.44 0.8 27.91 ? O8 HJ3 1000 A 1 HETATM 9 C C5 HJ3 . . . B 2 44.151 6.461 28.784 0.8 32.43 ? C5 HJ3 1000 A 1 HETATM 10 S S1 HJ3 . . . B 2 44.704 6.361 30.458 0.8 33.61 ? S1 HJ3 1000 A 1 HETATM 11 N N4 HJ3 . . . B 2 44.354 5.145 28.211 0.8 32.65 ? N4 HJ3 1000 A 1 HETATM 12 C C3 HJ3 . . . B 2 44.353 4.049 29.17 0.8 32.63 ? C3 HJ3 1000 A 1 HETATM 13 C C12 HJ3 . . . B 2 44.897 2.733 28.635 0.8 31.76 ? C12 HJ3 1000 A 1 HETATM 14 O O14 HJ3 . . . B 2 44.182 1.724 28.737 0.8 30.99 ? O14 HJ3 1000 A 1 HETATM 15 O O13 HJ3 . . . B 2 46.01 2.666 28.072 0.8 31.25 ? O13 HJ3 1000 A 1 HETATM 16 C C2 HJ3 . . . B 2 44.948 4.597 30.482 0.8 33.63 ? C2 HJ3 1000 A 1 HETATM 17 C C16 HJ3 . . . B 2 44.178 3.991 31.658 0.8 33.94 ? C16 HJ3 1000 A 1 HETATM 18 C C15 HJ3 . . . B 2 46.438 4.304 30.667 0.8 33.04 ? C15 HJ3 1000 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 18 #