data_3BEI
#
_model_server_result.job_id            kF7AH0BPgsuCZyyvyswJfQ 
_model_server_result.datetime_utc      '2024-12-22 06:24:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bei 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    3BEI 
#
_exptl.entry_id    3BEI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BEI 
_cell.length_a            57.98 
_cell.length_b            57.98 
_cell.length_c            120.201 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BEI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 17 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
covale ? covale1 B ND2 ASN 53 B ASN 60 1_555 C C1 NAG . B NAG 303 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3BEI 
_atom_sites.fract_transf_matrix[1][1]    0.017247 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017247 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008319 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG B 1 303 303 NAG NAG . 
D 4 GOL B 1 301 301 GOL GOL . 
E 4 GOL B 1 302 302 GOL GOL . 
F 5 HOH A 1 1016 1016 HOH HOH . 
F 5 HOH A 2 1028 1028 HOH HOH . 
F 5 HOH A 3 1029 1029 HOH HOH . 
F 5 HOH A 4 1031 1031 HOH HOH . 
F 5 HOH A 5 1038 1038 HOH HOH . 
F 5 HOH A 6 1051 1051 HOH HOH . 
F 5 HOH A 7 1059 1059 HOH HOH . 
F 5 HOH A 8 1066 1066 HOH HOH . 
F 5 HOH A 9 1074 1074 HOH HOH . 
F 5 HOH A 10 1075 1075 HOH HOH . 
F 5 HOH A 11 1077 1077 HOH HOH . 
F 5 HOH A 12 1083 1083 HOH HOH . 
F 5 HOH A 13 1087 1087 HOH HOH . 
F 5 HOH A 14 1092 1092 HOH HOH . 
F 5 HOH A 15 1098 1098 HOH HOH . 
F 5 HOH A 16 1100 1100 HOH HOH . 
F 5 HOH A 17 1101 1101 HOH HOH . 
F 5 HOH A 18 1105 1105 HOH HOH . 
F 5 HOH A 19 1115 1115 HOH HOH . 
F 5 HOH A 20 1121 1121 HOH HOH . 
F 5 HOH A 21 1129 1129 HOH HOH . 
F 5 HOH A 22 1130 1130 HOH HOH . 
F 5 HOH A 23 1132 1132 HOH HOH . 
F 5 HOH A 24 1135 1135 HOH HOH . 
F 5 HOH A 25 1137 1137 HOH HOH . 
F 5 HOH A 26 1138 1138 HOH HOH . 
F 5 HOH A 27 1139 1139 HOH HOH . 
F 5 HOH A 28 1140 1140 HOH HOH . 
F 5 HOH A 29 1146 1146 HOH HOH . 
F 5 HOH A 30 1150 1150 HOH HOH . 
F 5 HOH A 31 1153 1153 HOH HOH . 
F 5 HOH A 32 1157 1157 HOH HOH . 
F 5 HOH A 33 1159 1159 HOH HOH . 
F 5 HOH A 34 1162 1162 HOH HOH . 
F 5 HOH A 35 1164 1164 HOH HOH . 
F 5 HOH A 36 1182 1182 HOH HOH . 
F 5 HOH A 37 1190 1190 HOH HOH . 
F 5 HOH A 38 1191 1191 HOH HOH . 
F 5 HOH A 39 1195 1195 HOH HOH . 
F 5 HOH A 40 1196 1196 HOH HOH . 
F 5 HOH A 41 1199 1199 HOH HOH . 
F 5 HOH A 42 1213 1213 HOH HOH . 
G 5 HOH B 1 1001 1001 HOH HOH . 
G 5 HOH B 2 1002 1002 HOH HOH . 
G 5 HOH B 3 1003 1003 HOH HOH . 
G 5 HOH B 4 1004 1004 HOH HOH . 
G 5 HOH B 5 1005 1005 HOH HOH . 
G 5 HOH B 6 1006 1006 HOH HOH . 
G 5 HOH B 7 1007 1007 HOH HOH . 
G 5 HOH B 8 1008 1008 HOH HOH . 
G 5 HOH B 9 1009 1009 HOH HOH . 
G 5 HOH B 10 1010 1010 HOH HOH . 
G 5 HOH B 11 1011 1011 HOH HOH . 
G 5 HOH B 12 1012 1012 HOH HOH . 
G 5 HOH B 13 1013 1013 HOH HOH . 
G 5 HOH B 14 1014 1014 HOH HOH . 
G 5 HOH B 15 1015 1015 HOH HOH . 
G 5 HOH B 16 1017 1017 HOH HOH . 
G 5 HOH B 17 1018 1018 HOH HOH . 
G 5 HOH B 18 1019 1019 HOH HOH . 
G 5 HOH B 19 1020 1020 HOH HOH . 
G 5 HOH B 20 1021 1021 HOH HOH . 
G 5 HOH B 21 1022 1022 HOH HOH . 
G 5 HOH B 22 1023 1023 HOH HOH . 
G 5 HOH B 23 1024 1024 HOH HOH . 
G 5 HOH B 24 1025 1025 HOH HOH . 
G 5 HOH B 25 1026 1026 HOH HOH . 
G 5 HOH B 26 1027 1027 HOH HOH . 
G 5 HOH B 27 1030 1030 HOH HOH . 
G 5 HOH B 28 1032 1032 HOH HOH . 
G 5 HOH B 29 1033 1033 HOH HOH . 
G 5 HOH B 30 1034 1034 HOH HOH . 
G 5 HOH B 31 1035 1035 HOH HOH . 
G 5 HOH B 32 1036 1036 HOH HOH . 
G 5 HOH B 33 1037 1037 HOH HOH . 
G 5 HOH B 34 1039 1039 HOH HOH . 
G 5 HOH B 35 1040 1040 HOH HOH . 
G 5 HOH B 36 1041 1041 HOH HOH . 
G 5 HOH B 37 1042 1042 HOH HOH . 
G 5 HOH B 38 1043 1043 HOH HOH . 
G 5 HOH B 39 1044 1044 HOH HOH . 
G 5 HOH B 40 1045 1045 HOH HOH . 
G 5 HOH B 41 1046 1046 HOH HOH . 
G 5 HOH B 42 1047 1047 HOH HOH . 
G 5 HOH B 43 1048 1048 HOH HOH . 
G 5 HOH B 44 1049 1049 HOH HOH . 
G 5 HOH B 45 1050 1050 HOH HOH . 
G 5 HOH B 46 1052 1052 HOH HOH . 
G 5 HOH B 47 1053 1053 HOH HOH . 
G 5 HOH B 48 1054 1054 HOH HOH . 
G 5 HOH B 49 1055 1055 HOH HOH . 
G 5 HOH B 50 1056 1056 HOH HOH . 
G 5 HOH B 51 1057 1057 HOH HOH . 
G 5 HOH B 52 1058 1058 HOH HOH . 
G 5 HOH B 53 1060 1060 HOH HOH . 
G 5 HOH B 54 1061 1061 HOH HOH . 
G 5 HOH B 55 1062 1062 HOH HOH . 
G 5 HOH B 56 1063 1063 HOH HOH . 
G 5 HOH B 57 1064 1064 HOH HOH . 
G 5 HOH B 58 1065 1065 HOH HOH . 
G 5 HOH B 59 1067 1067 HOH HOH . 
G 5 HOH B 60 1068 1068 HOH HOH . 
G 5 HOH B 61 1069 1069 HOH HOH . 
G 5 HOH B 62 1070 1070 HOH HOH . 
G 5 HOH B 63 1071 1071 HOH HOH . 
G 5 HOH B 64 1072 1072 HOH HOH . 
G 5 HOH B 65 1073 1073 HOH HOH . 
G 5 HOH B 66 1076 1076 HOH HOH . 
G 5 HOH B 67 1078 1078 HOH HOH . 
G 5 HOH B 68 1079 1079 HOH HOH . 
G 5 HOH B 69 1080 1080 HOH HOH . 
G 5 HOH B 70 1081 1081 HOH HOH . 
G 5 HOH B 71 1082 1082 HOH HOH . 
G 5 HOH B 72 1084 1084 HOH HOH . 
G 5 HOH B 73 1085 1085 HOH HOH . 
G 5 HOH B 74 1086 1086 HOH HOH . 
G 5 HOH B 75 1088 1088 HOH HOH . 
G 5 HOH B 76 1089 1089 HOH HOH . 
G 5 HOH B 77 1090 1090 HOH HOH . 
G 5 HOH B 78 1091 1091 HOH HOH . 
G 5 HOH B 79 1093 1093 HOH HOH . 
G 5 HOH B 80 1094 1094 HOH HOH . 
G 5 HOH B 81 1095 1095 HOH HOH . 
G 5 HOH B 82 1096 1096 HOH HOH . 
G 5 HOH B 83 1097 1097 HOH HOH . 
G 5 HOH B 84 1099 1099 HOH HOH . 
G 5 HOH B 85 1102 1102 HOH HOH . 
G 5 HOH B 86 1103 1103 HOH HOH . 
G 5 HOH B 87 1104 1104 HOH HOH . 
G 5 HOH B 88 1106 1106 HOH HOH . 
G 5 HOH B 89 1107 1107 HOH HOH . 
G 5 HOH B 90 1108 1108 HOH HOH . 
G 5 HOH B 91 1109 1109 HOH HOH . 
G 5 HOH B 92 1110 1110 HOH HOH . 
G 5 HOH B 93 1111 1111 HOH HOH . 
G 5 HOH B 94 1112 1112 HOH HOH . 
G 5 HOH B 95 1113 1113 HOH HOH . 
G 5 HOH B 96 1114 1114 HOH HOH . 
G 5 HOH B 97 1116 1116 HOH HOH . 
G 5 HOH B 98 1117 1117 HOH HOH . 
G 5 HOH B 99 1118 1118 HOH HOH . 
G 5 HOH B 100 1119 1119 HOH HOH . 
G 5 HOH B 101 1120 1120 HOH HOH . 
G 5 HOH B 102 1122 1122 HOH HOH . 
G 5 HOH B 103 1123 1123 HOH HOH . 
G 5 HOH B 104 1124 1124 HOH HOH . 
G 5 HOH B 105 1125 1125 HOH HOH . 
G 5 HOH B 106 1126 1126 HOH HOH . 
G 5 HOH B 107 1127 1127 HOH HOH . 
G 5 HOH B 108 1128 1128 HOH HOH . 
G 5 HOH B 109 1131 1131 HOH HOH . 
G 5 HOH B 110 1133 1133 HOH HOH . 
G 5 HOH B 111 1134 1134 HOH HOH . 
G 5 HOH B 112 1136 1136 HOH HOH . 
G 5 HOH B 113 1141 1141 HOH HOH . 
G 5 HOH B 114 1142 1142 HOH HOH . 
G 5 HOH B 115 1143 1143 HOH HOH . 
G 5 HOH B 116 1144 1144 HOH HOH . 
G 5 HOH B 117 1145 1145 HOH HOH . 
G 5 HOH B 118 1147 1147 HOH HOH . 
G 5 HOH B 119 1148 1148 HOH HOH . 
G 5 HOH B 120 1149 1149 HOH HOH . 
G 5 HOH B 121 1151 1151 HOH HOH . 
G 5 HOH B 122 1152 1152 HOH HOH . 
G 5 HOH B 123 1154 1154 HOH HOH . 
G 5 HOH B 124 1155 1155 HOH HOH . 
G 5 HOH B 125 1156 1156 HOH HOH . 
G 5 HOH B 126 1158 1158 HOH HOH . 
G 5 HOH B 127 1160 1160 HOH HOH . 
G 5 HOH B 128 1161 1161 HOH HOH . 
G 5 HOH B 129 1163 1163 HOH HOH . 
G 5 HOH B 130 1165 1165 HOH HOH . 
G 5 HOH B 131 1166 1166 HOH HOH . 
G 5 HOH B 132 1167 1167 HOH HOH . 
G 5 HOH B 133 1168 1168 HOH HOH . 
G 5 HOH B 134 1169 1169 HOH HOH . 
G 5 HOH B 135 1170 1170 HOH HOH . 
G 5 HOH B 136 1171 1171 HOH HOH . 
G 5 HOH B 137 1172 1172 HOH HOH . 
G 5 HOH B 138 1173 1173 HOH HOH . 
G 5 HOH B 139 1174 1174 HOH HOH . 
G 5 HOH B 140 1175 1175 HOH HOH . 
G 5 HOH B 141 1176 1176 HOH HOH . 
G 5 HOH B 142 1177 1177 HOH HOH . 
G 5 HOH B 143 1178 1178 HOH HOH . 
G 5 HOH B 144 1179 1179 HOH HOH . 
G 5 HOH B 145 1180 1180 HOH HOH . 
G 5 HOH B 146 1181 1181 HOH HOH . 
G 5 HOH B 147 1183 1183 HOH HOH . 
G 5 HOH B 148 1184 1184 HOH HOH . 
G 5 HOH B 149 1185 1185 HOH HOH . 
G 5 HOH B 150 1186 1186 HOH HOH . 
G 5 HOH B 151 1187 1187 HOH HOH . 
G 5 HOH B 152 1188 1188 HOH HOH . 
G 5 HOH B 153 1189 1189 HOH HOH . 
G 5 HOH B 154 1192 1192 HOH HOH . 
G 5 HOH B 155 1193 1193 HOH HOH . 
G 5 HOH B 156 1194 1194 HOH HOH . 
G 5 HOH B 157 1197 1197 HOH HOH . 
G 5 HOH B 158 1198 1198 HOH HOH . 
G 5 HOH B 159 1200 1200 HOH HOH . 
G 5 HOH B 160 1201 1201 HOH HOH . 
G 5 HOH B 161 1202 1202 HOH HOH . 
G 5 HOH B 162 1203 1203 HOH HOH . 
G 5 HOH B 163 1204 1204 HOH HOH . 
G 5 HOH B 164 1205 1205 HOH HOH . 
G 5 HOH B 165 1206 1206 HOH HOH . 
G 5 HOH B 166 1207 1207 HOH HOH . 
G 5 HOH B 167 1208 1208 HOH HOH . 
G 5 HOH B 168 1209 1209 HOH HOH . 
G 5 HOH B 169 1210 1210 HOH HOH . 
G 5 HOH B 170 1211 1211 HOH HOH . 
G 5 HOH B 171 1212 1212 HOH HOH . 
G 5 HOH B 172 1214 1214 HOH HOH . 
G 5 HOH B 173 1215 1215 HOH HOH . 
G 5 HOH B 174 1216 1216 HOH HOH . 
G 5 HOH B 175 1217 1217 HOH HOH . 
G 5 HOH B 176 1218 1218 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 28.736 19.422 10.484 1 61.02 ? C1 GOL 301 B 1 
HETATM 2 O O1 GOL . . . D 4 28.712 20.576 9.637 1 61.68 ? O1 GOL 301 B 1 
HETATM 3 C C2 GOL . . . D 4 29.922 18.547 10.082 1 60.68 ? C2 GOL 301 B 1 
HETATM 4 O O2 GOL . . . D 4 29.713 18.07 8.771 1 59.3 ? O2 GOL 301 B 1 
HETATM 5 C C3 GOL . . . D 4 30.084 17.383 11.082 1 61.83 ? C3 GOL 301 B 1 
HETATM 6 O O3 GOL . . . D 4 31.171 16.537 10.685 1 63.62 ? O3 GOL 301 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           220 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#