data_3BF4 # _model_server_result.job_id leCCADT0cha6QTwZKlEMSA _model_server_result.datetime_utc '2024-11-13 14:12:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":110}' # _entry.id 3BF4 # _exptl.entry_id 3BF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BF4 _cell.length_a 74.54 _cell.length_b 74.54 _cell.length_c 98.87 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 19 A GLY 0 1_555 A N MSE 20 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 20 A MSE 1 1_555 A N ILE 21 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C VAL 25 A VAL 6 1_555 A N MSE 26 A MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 26 A MSE 7 1_555 A N TYR 27 A TYR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C HIS 44 A HIS 25 1_555 A N MSE 45 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 45 A MSE 26 1_555 A N PRO 46 A PRO 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale7 A C PRO 46 A PRO 27 1_555 A N MSE 47 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 A C MSE 47 A MSE 28 1_555 A N VAL 48 A VAL 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C ALA 78 A ALA 59 1_555 A N MSE 79 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C MSE 79 A MSE 60 1_555 A N CYS 80 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C ALA 93 A ALA 74 1_555 A N MSE 94 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 A C MSE 94 A MSE 75 1_555 A N TYR 95 A TYR 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 B C GLY 19 B GLY 0 1_555 B N MSE 20 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale14 B C MSE 20 B MSE 1 1_555 B N ILE 21 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 B C VAL 25 B VAL 6 1_555 B N MSE 26 B MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 B C MSE 26 B MSE 7 1_555 B N TYR 27 B TYR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale17 B C HIS 44 B HIS 25 1_555 B N MSE 45 B MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 B C MSE 45 B MSE 26 1_555 B N PRO 46 B PRO 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale19 B C PRO 46 B PRO 27 1_555 B N MSE 47 B MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 B C MSE 47 B MSE 28 1_555 B N VAL 48 B VAL 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 B C ALA 78 B ALA 59 1_555 B N MSE 79 B MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 B C MSE 79 B MSE 60 1_555 B N CYS 80 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale23 B C ALA 93 B ALA 74 1_555 B N MSE 94 B MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 B C MSE 94 B MSE 75 1_555 B N TYR 95 B TYR 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3BF4 _atom_sites.fract_transf_matrix[1][1] 0.013416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 109 5 EDO EDO . D 2 EDO B 1 109 2 EDO EDO . E 2 EDO B 1 110 3 EDO EDO . F 2 EDO B 1 111 4 EDO EDO . G 2 EDO B 1 112 6 EDO EDO . H 3 IPA B 1 113 1 IPA IPA . I 4 HOH A 1 110 7 HOH HOH . I 4 HOH A 2 111 8 HOH HOH . I 4 HOH A 3 112 9 HOH HOH . I 4 HOH A 4 113 10 HOH HOH . I 4 HOH A 5 114 11 HOH HOH . I 4 HOH A 6 115 12 HOH HOH . I 4 HOH A 7 116 17 HOH HOH . I 4 HOH A 8 117 18 HOH HOH . I 4 HOH A 9 118 23 HOH HOH . I 4 HOH A 10 119 25 HOH HOH . I 4 HOH A 11 120 27 HOH HOH . I 4 HOH A 12 121 31 HOH HOH . I 4 HOH A 13 122 33 HOH HOH . I 4 HOH A 14 123 38 HOH HOH . I 4 HOH A 15 124 39 HOH HOH . I 4 HOH A 16 125 41 HOH HOH . I 4 HOH A 17 126 42 HOH HOH . I 4 HOH A 18 127 44 HOH HOH . I 4 HOH A 19 128 50 HOH HOH . I 4 HOH A 20 129 51 HOH HOH . I 4 HOH A 21 130 55 HOH HOH . I 4 HOH A 22 131 57 HOH HOH . I 4 HOH A 23 132 59 HOH HOH . I 4 HOH A 24 133 62 HOH HOH . I 4 HOH A 25 134 63 HOH HOH . I 4 HOH A 26 135 64 HOH HOH . I 4 HOH A 27 136 65 HOH HOH . I 4 HOH A 28 137 66 HOH HOH . I 4 HOH A 29 138 71 HOH HOH . I 4 HOH A 30 139 74 HOH HOH . I 4 HOH A 31 140 76 HOH HOH . I 4 HOH A 32 141 77 HOH HOH . I 4 HOH A 33 142 80 HOH HOH . I 4 HOH A 34 143 82 HOH HOH . I 4 HOH A 35 144 87 HOH HOH . I 4 HOH A 36 145 88 HOH HOH . I 4 HOH A 37 146 89 HOH HOH . I 4 HOH A 38 147 92 HOH HOH . I 4 HOH A 39 148 93 HOH HOH . I 4 HOH A 40 149 97 HOH HOH . I 4 HOH A 41 150 98 HOH HOH . I 4 HOH A 42 151 99 HOH HOH . I 4 HOH A 43 152 100 HOH HOH . I 4 HOH A 44 153 101 HOH HOH . I 4 HOH A 45 154 105 HOH HOH . I 4 HOH A 46 155 108 HOH HOH . I 4 HOH A 47 156 112 HOH HOH . I 4 HOH A 48 157 114 HOH HOH . I 4 HOH A 49 158 115 HOH HOH . I 4 HOH A 50 159 116 HOH HOH . I 4 HOH A 51 160 117 HOH HOH . I 4 HOH A 52 161 120 HOH HOH . I 4 HOH A 53 162 121 HOH HOH . I 4 HOH A 54 163 123 HOH HOH . I 4 HOH A 55 164 124 HOH HOH . I 4 HOH A 56 165 125 HOH HOH . I 4 HOH A 57 166 127 HOH HOH . I 4 HOH A 58 167 129 HOH HOH . I 4 HOH A 59 168 133 HOH HOH . I 4 HOH A 60 169 134 HOH HOH . I 4 HOH A 61 170 145 HOH HOH . I 4 HOH A 62 171 146 HOH HOH . I 4 HOH A 63 172 147 HOH HOH . I 4 HOH A 64 173 155 HOH HOH . I 4 HOH A 65 174 160 HOH HOH . I 4 HOH A 66 175 164 HOH HOH . I 4 HOH A 67 176 165 HOH HOH . I 4 HOH A 68 177 166 HOH HOH . I 4 HOH A 69 178 167 HOH HOH . I 4 HOH A 70 179 168 HOH HOH . I 4 HOH A 71 180 181 HOH HOH . I 4 HOH A 72 181 188 HOH HOH . J 4 HOH B 1 114 13 HOH HOH . J 4 HOH B 2 115 14 HOH HOH . J 4 HOH B 3 116 15 HOH HOH . J 4 HOH B 4 117 16 HOH HOH . J 4 HOH B 5 118 19 HOH HOH . J 4 HOH B 6 119 20 HOH HOH . J 4 HOH B 7 120 21 HOH HOH . J 4 HOH B 8 121 22 HOH HOH . J 4 HOH B 9 122 24 HOH HOH . J 4 HOH B 10 123 26 HOH HOH . J 4 HOH B 11 124 28 HOH HOH . J 4 HOH B 12 125 29 HOH HOH . J 4 HOH B 13 126 30 HOH HOH . J 4 HOH B 14 127 32 HOH HOH . J 4 HOH B 15 128 34 HOH HOH . J 4 HOH B 16 129 35 HOH HOH . J 4 HOH B 17 130 36 HOH HOH . J 4 HOH B 18 131 37 HOH HOH . J 4 HOH B 19 132 40 HOH HOH . J 4 HOH B 20 133 43 HOH HOH . J 4 HOH B 21 134 45 HOH HOH . J 4 HOH B 22 135 46 HOH HOH . J 4 HOH B 23 136 47 HOH HOH . J 4 HOH B 24 137 48 HOH HOH . J 4 HOH B 25 138 49 HOH HOH . J 4 HOH B 26 139 52 HOH HOH . J 4 HOH B 27 140 53 HOH HOH . J 4 HOH B 28 141 54 HOH HOH . J 4 HOH B 29 142 56 HOH HOH . J 4 HOH B 30 143 58 HOH HOH . J 4 HOH B 31 144 60 HOH HOH . J 4 HOH B 32 145 61 HOH HOH . J 4 HOH B 33 146 67 HOH HOH . J 4 HOH B 34 147 68 HOH HOH . J 4 HOH B 35 148 69 HOH HOH . J 4 HOH B 36 149 70 HOH HOH . J 4 HOH B 37 150 72 HOH HOH . J 4 HOH B 38 151 73 HOH HOH . J 4 HOH B 39 152 75 HOH HOH . J 4 HOH B 40 153 78 HOH HOH . J 4 HOH B 41 154 79 HOH HOH . J 4 HOH B 42 155 81 HOH HOH . J 4 HOH B 43 156 83 HOH HOH . J 4 HOH B 44 157 84 HOH HOH . J 4 HOH B 45 158 85 HOH HOH . J 4 HOH B 46 159 86 HOH HOH . J 4 HOH B 47 160 90 HOH HOH . J 4 HOH B 48 161 91 HOH HOH . J 4 HOH B 49 162 94 HOH HOH . J 4 HOH B 50 163 95 HOH HOH . J 4 HOH B 51 164 96 HOH HOH . J 4 HOH B 52 165 102 HOH HOH . J 4 HOH B 53 166 103 HOH HOH . J 4 HOH B 54 167 104 HOH HOH . J 4 HOH B 55 168 106 HOH HOH . J 4 HOH B 56 169 107 HOH HOH . J 4 HOH B 57 170 109 HOH HOH . J 4 HOH B 58 171 110 HOH HOH . J 4 HOH B 59 172 111 HOH HOH . J 4 HOH B 60 173 113 HOH HOH . J 4 HOH B 61 174 118 HOH HOH . J 4 HOH B 62 175 119 HOH HOH . J 4 HOH B 63 176 122 HOH HOH . J 4 HOH B 64 177 126 HOH HOH . J 4 HOH B 65 178 128 HOH HOH . J 4 HOH B 66 179 130 HOH HOH . J 4 HOH B 67 180 131 HOH HOH . J 4 HOH B 68 181 132 HOH HOH . J 4 HOH B 69 182 135 HOH HOH . J 4 HOH B 70 183 136 HOH HOH . J 4 HOH B 71 184 137 HOH HOH . J 4 HOH B 72 185 138 HOH HOH . J 4 HOH B 73 186 139 HOH HOH . J 4 HOH B 74 187 140 HOH HOH . J 4 HOH B 75 188 141 HOH HOH . J 4 HOH B 76 189 142 HOH HOH . J 4 HOH B 77 190 143 HOH HOH . J 4 HOH B 78 191 144 HOH HOH . J 4 HOH B 79 192 148 HOH HOH . J 4 HOH B 80 193 149 HOH HOH . J 4 HOH B 81 194 150 HOH HOH . J 4 HOH B 82 195 151 HOH HOH . J 4 HOH B 83 196 152 HOH HOH . J 4 HOH B 84 197 153 HOH HOH . J 4 HOH B 85 198 154 HOH HOH . J 4 HOH B 86 199 156 HOH HOH . J 4 HOH B 87 200 157 HOH HOH . J 4 HOH B 88 201 158 HOH HOH . J 4 HOH B 89 202 159 HOH HOH . J 4 HOH B 90 203 161 HOH HOH . J 4 HOH B 91 204 162 HOH HOH . J 4 HOH B 92 205 163 HOH HOH . J 4 HOH B 93 206 169 HOH HOH . J 4 HOH B 94 207 170 HOH HOH . J 4 HOH B 95 208 171 HOH HOH . J 4 HOH B 96 209 172 HOH HOH . J 4 HOH B 97 210 173 HOH HOH . J 4 HOH B 98 211 174 HOH HOH . J 4 HOH B 99 212 175 HOH HOH . J 4 HOH B 100 213 176 HOH HOH . J 4 HOH B 101 214 177 HOH HOH . J 4 HOH B 102 215 178 HOH HOH . J 4 HOH B 103 216 179 HOH HOH . J 4 HOH B 104 217 180 HOH HOH . J 4 HOH B 105 218 182 HOH HOH . J 4 HOH B 106 219 183 HOH HOH . J 4 HOH B 107 220 184 HOH HOH . J 4 HOH B 108 221 185 HOH HOH . J 4 HOH B 109 222 186 HOH HOH . J 4 HOH B 110 223 187 HOH HOH . J 4 HOH B 111 224 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 14.972 16.351 36.572 1 57.3 ? C1 EDO 110 B 1 HETATM 2 O O1 EDO . . . E 2 15.227 15.731 37.815 1 51.75 ? O1 EDO 110 B 1 HETATM 3 C C2 EDO . . . E 2 16.158 17.247 36.228 1 58.2 ? C2 EDO 110 B 1 HETATM 4 O O2 EDO . . . E 2 15.648 18.533 35.861 1 44.37 ? O2 EDO 110 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #