data_3BFA
#
_model_server_result.job_id            eyqBuQTHXXPqa6Oc7JBjhg 
_model_server_result.datetime_utc      '2025-08-31 21:18:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":120}' 
#
_entry.id    3BFA 
#
_exptl.entry_id    3BFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              184.232 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2Z)-9-oxodec-2-enoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BFA 
_cell.length_a            77.461 
_cell.length_b            85.019 
_cell.length_c            48.345 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 20 A CYS 20 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 47 A CYS 47 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf3 A SG CYS 89 A CYS 89 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
#
_chem_comp.formula           'C10 H16 O3' 
_chem_comp.formula_weight    184.232 
_chem_comp.id                9OD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2Z)-9-oxodec-2-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '9-keto-2(E)-decenoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O9 C9 9OD doub 1 n n 
C9 C10 9OD sing 2 n n 
C9 C8 9OD sing 3 n n 
C8 C7 9OD sing 4 n n 
C7 C6 9OD sing 5 n n 
C6 C5 9OD sing 6 n n 
C5 C4 9OD sing 7 n n 
C4 C3 9OD sing 8 n n 
C3 C2 9OD doub 9 n n 
C2 C1 9OD sing 10 n n 
C1 OE1 9OD sing 11 n n 
C1 OE2 9OD doub 12 n n 
C10 H10 9OD sing 13 n n 
C10 H10A 9OD sing 14 n n 
C10 H10B 9OD sing 15 n n 
C8 H8 9OD sing 16 n n 
C8 H8A 9OD sing 17 n n 
C7 H7 9OD sing 18 n n 
C7 H7A 9OD sing 19 n n 
C6 H6 9OD sing 20 n n 
C6 H6A 9OD sing 21 n n 
C5 H5 9OD sing 22 z n 
C5 H5A 9OD sing 23 n n 
C4 H4 9OD sing 24 n n 
C4 H4A 9OD sing 25 n n 
C3 H3 9OD sing 26 n n 
C2 H2 9OD sing 27 n n 
OE1 HOE1 9OD sing 28 n n 
#
_atom_sites.entry_id                     3BFA 
_atom_sites.fract_transf_matrix[1][1]    0.01291 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011762 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020685 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 9OD A 1 120 1 9OD 9OD . 
C 3 GOL A 1 121 1 GOL GOL . 
D 4 HOH A 1 122 1 HOH HOH . 
D 4 HOH A 2 123 2 HOH HOH . 
D 4 HOH A 3 124 3 HOH HOH . 
D 4 HOH A 4 125 4 HOH HOH . 
D 4 HOH A 5 126 5 HOH HOH . 
D 4 HOH A 6 127 6 HOH HOH . 
D 4 HOH A 7 128 7 HOH HOH . 
D 4 HOH A 8 129 8 HOH HOH . 
D 4 HOH A 9 130 9 HOH HOH . 
D 4 HOH A 10 131 10 HOH HOH . 
D 4 HOH A 11 132 11 HOH HOH . 
D 4 HOH A 12 133 12 HOH HOH . 
D 4 HOH A 13 134 13 HOH HOH . 
D 4 HOH A 14 135 14 HOH HOH . 
D 4 HOH A 15 136 15 HOH HOH . 
D 4 HOH A 16 137 16 HOH HOH . 
D 4 HOH A 17 138 17 HOH HOH . 
D 4 HOH A 18 139 18 HOH HOH . 
D 4 HOH A 19 140 19 HOH HOH . 
D 4 HOH A 20 141 20 HOH HOH . 
D 4 HOH A 21 142 21 HOH HOH . 
D 4 HOH A 22 143 22 HOH HOH . 
D 4 HOH A 23 144 23 HOH HOH . 
D 4 HOH A 24 145 24 HOH HOH . 
D 4 HOH A 25 146 25 HOH HOH . 
D 4 HOH A 26 147 26 HOH HOH . 
D 4 HOH A 27 148 27 HOH HOH . 
D 4 HOH A 28 149 28 HOH HOH . 
D 4 HOH A 29 150 29 HOH HOH . 
D 4 HOH A 30 151 30 HOH HOH . 
D 4 HOH A 31 152 31 HOH HOH . 
D 4 HOH A 32 153 32 HOH HOH . 
D 4 HOH A 33 154 33 HOH HOH . 
D 4 HOH A 34 155 34 HOH HOH . 
D 4 HOH A 35 156 35 HOH HOH . 
D 4 HOH A 36 157 36 HOH HOH . 
D 4 HOH A 37 158 38 HOH HOH . 
D 4 HOH A 38 159 39 HOH HOH . 
D 4 HOH A 39 160 40 HOH HOH . 
D 4 HOH A 40 161 41 HOH HOH . 
D 4 HOH A 41 162 42 HOH HOH . 
D 4 HOH A 42 163 43 HOH HOH . 
D 4 HOH A 43 164 44 HOH HOH . 
D 4 HOH A 44 165 45 HOH HOH . 
D 4 HOH A 45 166 46 HOH HOH . 
D 4 HOH A 46 167 47 HOH HOH . 
D 4 HOH A 47 168 48 HOH HOH . 
D 4 HOH A 48 169 49 HOH HOH . 
D 4 HOH A 49 170 50 HOH HOH . 
D 4 HOH A 50 171 51 HOH HOH . 
D 4 HOH A 51 172 52 HOH HOH . 
D 4 HOH A 52 173 53 HOH HOH . 
D 4 HOH A 53 174 54 HOH HOH . 
D 4 HOH A 54 175 56 HOH HOH . 
D 4 HOH A 55 176 57 HOH HOH . 
D 4 HOH A 56 177 58 HOH HOH . 
D 4 HOH A 57 178 59 HOH HOH . 
D 4 HOH A 58 179 60 HOH HOH . 
D 4 HOH A 59 180 61 HOH HOH . 
D 4 HOH A 60 181 62 HOH HOH . 
D 4 HOH A 61 182 63 HOH HOH . 
D 4 HOH A 62 183 64 HOH HOH . 
D 4 HOH A 63 184 65 HOH HOH . 
D 4 HOH A 64 185 66 HOH HOH . 
D 4 HOH A 65 186 67 HOH HOH . 
D 4 HOH A 66 187 68 HOH HOH . 
D 4 HOH A 67 188 71 HOH HOH . 
D 4 HOH A 68 189 72 HOH HOH . 
D 4 HOH A 69 190 73 HOH HOH . 
D 4 HOH A 70 191 74 HOH HOH . 
D 4 HOH A 71 192 75 HOH HOH . 
D 4 HOH A 72 193 76 HOH HOH . 
D 4 HOH A 73 194 80 HOH HOH . 
D 4 HOH A 74 195 81 HOH HOH . 
D 4 HOH A 75 196 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O9 9OD . . . B 2 13.437 14.128 -3.619 1 94.31 ? O9 9OD 120 A 1 
HETATM 2 C C9 9OD . . . B 2 13.286 13.653 -2.499 1 94.24 ? C9 9OD 120 A 1 
HETATM 3 C C10 9OD . . . B 2 11.929 13.564 -1.863 1 92.66 ? C10 9OD 120 A 1 
HETATM 4 C C8 9OD . . . B 2 14.488 13.139 -1.73 1 94.45 ? C8 9OD 120 A 1 
HETATM 5 C C7 9OD . . . B 2 15.414 12.351 -2.657 1 93.96 ? C7 9OD 120 A 1 
HETATM 6 C C6 9OD . . . B 2 16.532 11.644 -1.905 1 93.63 ? C6 9OD 120 A 1 
HETATM 7 C C5 9OD . . . B 2 17.502 10.954 -2.863 1 94 ? C5 9OD 120 A 1 
HETATM 8 C C4 9OD . . . B 2 18.971 11.161 -2.468 1 94.91 ? C4 9OD 120 A 1 
HETATM 9 C C3 9OD . . . B 2 19.818 10.152 -3.212 1 95.61 ? C3 9OD 120 A 1 
HETATM 10 C C2 9OD . . . B 2 21.155 10.067 -3.198 1 96.64 ? C2 9OD 120 A 1 
HETATM 11 C C1 9OD . . . B 2 22.083 10.942 -2.451 1 97.66 ? C1 9OD 120 A 1 
HETATM 12 O OE1 9OD . . . B 2 23.306 10.709 -2.568 1 96.73 ? OE1 9OD 120 A 1 
HETATM 13 O OE2 9OD . . . B 2 21.666 11.879 -1.736 1 99.53 ? OE2 9OD 120 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           404 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#