data_3BFB
#
_model_server_result.job_id            Fx7eXcVrCfTY87uG6ALAdA 
_model_server_result.datetime_utc      '2025-03-11 21:51:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bfb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":121}' 
#
_entry.id    3BFB 
#
_exptl.entry_id    3BFB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              184.232 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2Z)-9-oxodec-2-enoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3BFB 
_cell.length_a            78.099 
_cell.length_b            84.281 
_cell.length_c            47.602 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BFB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 23.801 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 20 A CYS 20 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 A SG CYS 47 A CYS 47 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf3 A SG CYS 89 A CYS 89 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
#
_chem_comp.formula           'C10 H16 O3' 
_chem_comp.formula_weight    184.232 
_chem_comp.id                9OD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2Z)-9-oxodec-2-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '9-keto-2(E)-decenoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O9 C9 9OD doub 1 n n 
C9 C10 9OD sing 2 n n 
C9 C8 9OD sing 3 n n 
C8 C7 9OD sing 4 n n 
C7 C6 9OD sing 5 n n 
C6 C5 9OD sing 6 n n 
C5 C4 9OD sing 7 n n 
C4 C3 9OD sing 8 n n 
C3 C2 9OD doub 9 n n 
C2 C1 9OD sing 10 n n 
C1 OE1 9OD sing 11 n n 
C1 OE2 9OD doub 12 n n 
C10 H10 9OD sing 13 n n 
C10 H10A 9OD sing 14 n n 
C10 H10B 9OD sing 15 n n 
C8 H8 9OD sing 16 n n 
C8 H8A 9OD sing 17 n n 
C7 H7 9OD sing 18 n n 
C7 H7A 9OD sing 19 n n 
C6 H6 9OD sing 20 n n 
C6 H6A 9OD sing 21 n n 
C5 H5 9OD sing 22 z n 
C5 H5A 9OD sing 23 n n 
C4 H4 9OD sing 24 n n 
C4 H4A 9OD sing 25 n n 
C3 H3 9OD sing 26 n n 
C2 H2 9OD sing 27 n n 
OE1 HOE1 9OD sing 28 n n 
#
_atom_sites.entry_id                     3BFB 
_atom_sites.fract_transf_matrix[1][1]    0.012804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011865 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 120 1 CL CL . 
C 3 9OD A 1 121 1 9OD 9OD . 
D 4 GOL A 1 122 1 GOL GOL . 
E 4 GOL A 1 123 2 GOL GOL . 
F 5 HOH A 1 124 1 HOH HOH . 
F 5 HOH A 2 125 2 HOH HOH . 
F 5 HOH A 3 126 3 HOH HOH . 
F 5 HOH A 4 127 4 HOH HOH . 
F 5 HOH A 5 128 5 HOH HOH . 
F 5 HOH A 6 129 6 HOH HOH . 
F 5 HOH A 7 130 7 HOH HOH . 
F 5 HOH A 8 131 8 HOH HOH . 
F 5 HOH A 9 132 9 HOH HOH . 
F 5 HOH A 10 133 10 HOH HOH . 
F 5 HOH A 11 134 11 HOH HOH . 
F 5 HOH A 12 135 12 HOH HOH . 
F 5 HOH A 13 136 13 HOH HOH . 
F 5 HOH A 14 137 14 HOH HOH . 
F 5 HOH A 15 138 15 HOH HOH . 
F 5 HOH A 16 139 16 HOH HOH . 
F 5 HOH A 17 140 17 HOH HOH . 
F 5 HOH A 18 141 18 HOH HOH . 
F 5 HOH A 19 142 19 HOH HOH . 
F 5 HOH A 20 143 20 HOH HOH . 
F 5 HOH A 21 144 21 HOH HOH . 
F 5 HOH A 22 145 22 HOH HOH . 
F 5 HOH A 23 146 23 HOH HOH . 
F 5 HOH A 24 147 24 HOH HOH . 
F 5 HOH A 25 148 25 HOH HOH . 
F 5 HOH A 26 149 26 HOH HOH . 
F 5 HOH A 27 150 28 HOH HOH . 
F 5 HOH A 28 151 29 HOH HOH . 
F 5 HOH A 29 152 30 HOH HOH . 
F 5 HOH A 30 153 31 HOH HOH . 
F 5 HOH A 31 154 32 HOH HOH . 
F 5 HOH A 32 155 33 HOH HOH . 
F 5 HOH A 33 156 34 HOH HOH . 
F 5 HOH A 34 157 35 HOH HOH . 
F 5 HOH A 35 158 36 HOH HOH . 
F 5 HOH A 36 159 37 HOH HOH . 
F 5 HOH A 37 160 38 HOH HOH . 
F 5 HOH A 38 161 40 HOH HOH . 
F 5 HOH A 39 162 41 HOH HOH . 
F 5 HOH A 40 163 43 HOH HOH . 
F 5 HOH A 41 164 45 HOH HOH . 
F 5 HOH A 42 165 46 HOH HOH . 
F 5 HOH A 43 166 47 HOH HOH . 
F 5 HOH A 44 167 49 HOH HOH . 
F 5 HOH A 45 168 50 HOH HOH . 
F 5 HOH A 46 169 51 HOH HOH . 
F 5 HOH A 47 170 53 HOH HOH . 
F 5 HOH A 48 171 54 HOH HOH . 
F 5 HOH A 49 172 55 HOH HOH . 
F 5 HOH A 50 173 56 HOH HOH . 
F 5 HOH A 51 174 57 HOH HOH . 
F 5 HOH A 52 175 58 HOH HOH . 
F 5 HOH A 53 176 59 HOH HOH . 
F 5 HOH A 54 177 60 HOH HOH . 
F 5 HOH A 55 178 61 HOH HOH . 
F 5 HOH A 56 179 63 HOH HOH . 
F 5 HOH A 57 180 64 HOH HOH . 
F 5 HOH A 58 181 68 HOH HOH . 
F 5 HOH A 59 182 69 HOH HOH . 
F 5 HOH A 60 183 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O9 9OD . . . C 3 14.648 15.055 -2.354 1 60.52 ? O9 9OD 121 A 1 
HETATM 2 C C9 9OD . . . C 3 14.207 13.908 -2.383 1 60.58 ? C9 9OD 121 A 1 
HETATM 3 C C10 9OD . . . C 3 12.993 13.55 -3.2 1 59.89 ? C10 9OD 121 A 1 
HETATM 4 C C8 9OD . . . C 3 14.896 12.825 -1.573 1 59.43 ? C8 9OD 121 A 1 
HETATM 5 C C7 9OD . . . C 3 15.825 11.996 -2.458 1 58.71 ? C7 9OD 121 A 1 
HETATM 6 C C6 9OD . . . C 3 17.19 11.775 -1.807 1 58.34 ? C6 9OD 121 A 1 
HETATM 7 C C5 9OD . . . C 3 18.116 11.005 -2.74 1 57.41 ? C5 9OD 121 A 1 
HETATM 8 C C4 9OD . . . C 3 19.584 11.182 -2.343 1 57.83 ? C4 9OD 121 A 1 
HETATM 9 C C3 9OD . . . C 3 20.349 9.987 -2.878 1 58.84 ? C3 9OD 121 A 1 
HETATM 10 C C2 9OD . . . C 3 21.683 9.833 -2.929 1 58.71 ? C2 9OD 121 A 1 
HETATM 11 C C1 9OD . . . C 3 22.702 10.815 -2.49 1 58.68 ? C1 9OD 121 A 1 
HETATM 12 O OE1 9OD . . . C 3 23.904 10.501 -2.695 1 57.88 ? OE1 9OD 121 A 1 
HETATM 13 O OE2 9OD . . . C 3 22.378 11.905 -1.953 1 57.45 ? OE2 9OD 121 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#