data_3BG3 # _model_server_result.job_id uWxEJpJth5vOU-ntkG8F3A _model_server_result.datetime_utc '2024-11-13 17:32:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2000}' # _entry.id 3BG3 # _exptl.entry_id 3BG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.87 _cell.angle_gamma 90 _cell.entry_id 3BG3 _cell.length_a 81.274 _cell.length_b 173.321 _cell.length_c 118.194 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,D,E,F,G,L,M 2 1 B,C,H,I,J,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 684 A LYS 1144 1_555 G C11 BTI . A BTI 2100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD1 ASP 112 A ASP 572 1_555 E MN MN . A MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A OQ1 KCX 281 A KCX 741 1_555 E MN MN . A MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 A OQ2 KCX 281 A KCX 741 1_555 E MN MN . A MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc4 B OD1 ASP 112 B ASP 572 1_555 H MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 B OQ1 KCX 281 B KCX 741 1_555 H MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 B OQ2 KCX 281 B KCX 741 1_555 H MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 C OD1 ASP 112 C ASP 572 1_555 J MN MN . C MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 C OQ1 KCX 281 C KCX 741 1_555 J MN MN . C MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc9 C OQ2 KCX 281 C KCX 741 1_555 J MN MN . C MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc10 D OD1 ASP 112 D ASP 572 1_555 L MN MN . D MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc11 D OQ1 KCX 281 D KCX 741 1_555 L MN MN . D MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc12 D OQ2 KCX 281 D KCX 741 1_555 L MN MN . D MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 333 n n C OXT PYR sing 334 n n C CA PYR sing 335 n n OXT HXT PYR sing 336 n n CA O3 PYR doub 337 n n CA CB PYR sing 338 n n CB HB1 PYR sing 339 n n CB HB2 PYR sing 340 n n CB HB3 PYR sing 341 n n # _atom_sites.entry_id 3BG3 _atom_sites.fract_transf_matrix[1][1] 0.012304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001265 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 2001 2001 MN MN . F 3 PYR A 1 2000 2000 PYR PYR . G 4 BTI A 1 2100 2100 BTI BTI . H 2 MN B 1 2001 2001 MN MN . I 3 PYR B 1 2000 2000 PYR PYR . J 2 MN C 1 2001 2001 MN MN . K 3 PYR C 1 2000 2000 PYR PYR . L 2 MN D 1 2001 2001 MN MN . M 3 PYR D 1 2000 2000 PYR PYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . I 3 21.615 -51.078 20.461 1 74.43 ? C PYR 2000 B 1 HETATM 2 O O PYR . . . I 3 20.47 -51.2 21.09 1 74.65 ? O PYR 2000 B 1 HETATM 3 O OXT PYR . . . I 3 22.26 -52.186 20.171 1 74.71 ? OXT PYR 2000 B 1 HETATM 4 C CA PYR . . . I 3 22.132 -49.821 20.092 1 73.93 ? CA PYR 2000 B 1 HETATM 5 O O3 PYR . . . I 3 23.344 -49.714 19.588 1 72.86 ? O3 PYR 2000 B 1 HETATM 6 C CB PYR . . . I 3 21.313 -48.567 20.232 1 74.32 ? CB PYR 2000 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #