data_3BG3 # _model_server_result.job_id SrwC_qzfgDcp_Y-tirserg _model_server_result.datetime_utc '2024-11-13 17:17:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2100}' # _entry.id 3BG3 # _exptl.entry_id 3BG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.311 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.87 _cell.angle_gamma 90 _cell.entry_id 3BG3 _cell.length_a 81.274 _cell.length_b 173.321 _cell.length_c 118.194 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,D,E,F,G,L,M 2 1 B,C,H,I,J,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 684 A LYS 1144 1_555 G C11 BTI . A BTI 2100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD1 ASP 112 A ASP 572 1_555 E MN MN . A MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A OQ1 KCX 281 A KCX 741 1_555 E MN MN . A MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 A OQ2 KCX 281 A KCX 741 1_555 E MN MN . A MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc4 B OD1 ASP 112 B ASP 572 1_555 H MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 B OQ1 KCX 281 B KCX 741 1_555 H MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 B OQ2 KCX 281 B KCX 741 1_555 H MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 C OD1 ASP 112 C ASP 572 1_555 J MN MN . C MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 C OQ1 KCX 281 C KCX 741 1_555 J MN MN . C MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc9 C OQ2 KCX 281 C KCX 741 1_555 J MN MN . C MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc10 D OD1 ASP 112 D ASP 572 1_555 L MN MN . D MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc11 D OQ1 KCX 281 D KCX 741 1_555 L MN MN . D MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc12 D OQ2 KCX 281 D KCX 741 1_555 L MN MN . D MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? # _chem_comp.formula 'C10 H16 N2 O2 S' _chem_comp.formula_weight 228.311 _chem_comp.id BTI _chem_comp.mon_nstd_flag . _chem_comp.name 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTI doub 70 n n C11 C10 BTI sing 71 n n C11 H11 BTI sing 72 n n C10 C9 BTI sing 73 n n C10 H102 BTI sing 74 n n C10 H103 BTI sing 75 n n C9 C8 BTI sing 76 n n C9 H92 BTI sing 77 n n C9 H93 BTI sing 78 n n C8 C7 BTI sing 79 n n C8 H82 BTI sing 80 n n C8 H83 BTI sing 81 n n C7 C2 BTI sing 82 n n C7 H72 BTI sing 83 n n C7 H73 BTI sing 84 n n C2 S1 BTI sing 85 n n C2 C4 BTI sing 86 n n C2 H2 BTI sing 87 n n S1 C6 BTI sing 88 n n C6 C5 BTI sing 89 n n C6 H62 BTI sing 90 n n C6 H63 BTI sing 91 n n C5 N3 BTI sing 92 n n C5 C4 BTI sing 93 n n C5 H5 BTI sing 94 n n N3 C3 BTI sing 95 n n N3 HN3 BTI sing 96 n n C3 O3 BTI doub 97 n n C3 N2 BTI sing 98 n n N2 C4 BTI sing 99 n n N2 HN2 BTI sing 100 n n C4 H4 BTI sing 101 n n # _atom_sites.entry_id 3BG3 _atom_sites.fract_transf_matrix[1][1] 0.012304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001265 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 2001 2001 MN MN . F 3 PYR A 1 2000 2000 PYR PYR . G 4 BTI A 1 2100 2100 BTI BTI . H 2 MN B 1 2001 2001 MN MN . I 3 PYR B 1 2000 2000 PYR PYR . J 2 MN C 1 2001 2001 MN MN . K 3 PYR C 1 2000 2000 PYR PYR . L 2 MN D 1 2001 2001 MN MN . M 3 PYR D 1 2000 2000 PYR PYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTI . . . G 4 15.515 -56.897 13.406 1 90.05 ? C11 BTI 2100 A 1 HETATM 2 O O11 BTI . . . G 4 15.655 -57.696 12.488 1 89.98 ? O11 BTI 2100 A 1 HETATM 3 C C10 BTI . . . G 4 16.73 -56.446 14.198 1 90.21 ? C10 BTI 2100 A 1 HETATM 4 C C9 BTI . . . G 4 16.497 -55.111 14.897 1 90.08 ? C9 BTI 2100 A 1 HETATM 5 C C8 BTI . . . G 4 17.009 -53.945 14.061 1 91.43 ? C8 BTI 2100 A 1 HETATM 6 C C7 BTI . . . G 4 16.629 -52.608 14.698 1 92.42 ? C7 BTI 2100 A 1 HETATM 7 C C2 BTI . . . G 4 17.784 -52.044 15.527 1 92.9 ? C2 BTI 2100 A 1 HETATM 8 S S1 BTI . . . G 4 17.89 -52.812 17.115 1 92.36 ? S1 BTI 2100 A 1 HETATM 9 C C6 BTI . . . G 4 18.926 -51.537 17.748 1 92.9 ? C6 BTI 2100 A 1 HETATM 10 C C5 BTI . . . G 4 18.527 -50.237 17.05 1 93.62 ? C5 BTI 2100 A 1 HETATM 11 N N3 BTI . . . G 4 17.546 -49.63 17.939 1 93.65 ? N3 BTI 2100 A 1 HETATM 12 C C3 BTI . . . G 4 16.325 -49.708 17.447 1 93.71 ? C3 BTI 2100 A 1 HETATM 13 O O3 BTI . . . G 4 15.24 -49.298 18.093 1 94.02 ? O3 BTI 2100 A 1 HETATM 14 N N2 BTI . . . G 4 16.332 -50.253 16.24 1 93.99 ? N2 BTI 2100 A 1 HETATM 15 C C4 BTI . . . G 4 17.693 -50.547 15.795 1 93.5 ? C4 BTI 2100 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #