data_3BG5 # _model_server_result.job_id li1_JSMNG5e7n4MFnugsWA _model_server_result.datetime_utc '2024-11-13 17:22:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2000}' # _entry.id 3BG5 # _exptl.entry_id 3BG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.311 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.47 _cell.angle_gamma 90 _cell.entry_id 3BG5 _cell.length_a 96.428 _cell.length_b 256.083 _cell.length_c 126.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 1 A,C,E,F,G,H,L,M,N,O 2 1 B,D,I,J,K,P,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N ? 3 M N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 305 A SER 315 1_555 A N GLY 306 A GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C PRO 505 A PRO 513 1_555 A N ASN 506 A ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C VAL 757 A VAL 763 1_555 A N ASP 758 A ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C GLU 842 A GLU 849 1_555 A N SER 843 A SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A NZ LYS 1135 A LYS 1144 1_555 F C11 BTI . A BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C SER 305 B SER 315 1_555 B N GLY 306 B GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 B C PRO 505 B PRO 513 1_555 B N ASN 506 B ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C VAL 757 B VAL 763 1_555 B N ASP 758 B ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 B C GLU 842 B GLU 849 1_555 B N SER 843 B SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B NZ LYS 1135 B LYS 1144 1_555 J C11 BTI . B BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 C C SER 305 C SER 315 1_555 C N GLY 306 C GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 C C PRO 505 C PRO 513 1_555 C N ASN 506 C ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 C C VAL 757 C VAL 763 1_555 C N ASP 758 C ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale14 C C GLU 842 C GLU 849 1_555 C N SER 843 C SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 C NZ LYS 1135 C LYS 1144 1_555 M C11 BTI . C BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 D C SER 305 D SER 315 1_555 D N GLY 306 D GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale17 D C PRO 505 D PRO 513 1_555 D N ASN 506 D ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale18 D C VAL 757 D VAL 763 1_555 D N ASP 758 D ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 D C GLU 842 D GLU 849 1_555 D N SER 843 D SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 D NZ LYS 1135 D LYS 1144 1_555 Q C11 BTI . D BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 B OD1 ASP 565 B ASP 572 1_555 I MN MN . B MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc2 D OD1 ASP 565 D ASP 572 1_555 P MN MN . D MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? # _chem_comp.formula 'C10 H16 N2 O2 S' _chem_comp.formula_weight 228.311 _chem_comp.id BTI _chem_comp.mon_nstd_flag . _chem_comp.name 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTI doub 119 n n C11 C10 BTI sing 120 n n C11 H11 BTI sing 121 n n C10 C9 BTI sing 122 n n C10 H102 BTI sing 123 n n C10 H103 BTI sing 124 n n C9 C8 BTI sing 125 n n C9 H92 BTI sing 126 n n C9 H93 BTI sing 127 n n C8 C7 BTI sing 128 n n C8 H82 BTI sing 129 n n C8 H83 BTI sing 130 n n C7 C2 BTI sing 131 n n C7 H72 BTI sing 132 n n C7 H73 BTI sing 133 n n C2 S1 BTI sing 134 n n C2 C4 BTI sing 135 n n C2 H2 BTI sing 136 n n S1 C6 BTI sing 137 n n C6 C5 BTI sing 138 n n C6 H62 BTI sing 139 n n C6 H63 BTI sing 140 n n C5 N3 BTI sing 141 n n C5 C4 BTI sing 142 n n C5 H5 BTI sing 143 n n N3 C3 BTI sing 144 n n N3 HN3 BTI sing 145 n n C3 O3 BTI doub 146 n n C3 N2 BTI sing 147 n n N2 C4 BTI sing 148 n n N2 HN2 BTI sing 149 n n C4 H4 BTI sing 150 n n # _atom_sites.entry_id 3BG5 _atom_sites.fract_transf_matrix[1][1] 0.01037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003666 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 2002 2002 MN MN . F 3 BTI A 1 2000 2000 BTI BTI . G 4 PYR A 1 2001 2001 PYR PYR . H 5 ATP A 1 2100 2100 ATP ATP . I 2 MN B 1 2002 2002 MN MN . J 3 BTI B 1 2000 2000 BTI BTI . K 4 PYR B 1 2001 2001 PYR PYR . L 2 MN C 1 2002 2002 MN MN . M 3 BTI C 1 2000 2000 BTI BTI . N 4 PYR C 1 2001 2001 PYR PYR . O 5 ATP C 1 2100 2100 ATP ATP . P 2 MN D 1 2002 2002 MN MN . Q 3 BTI D 1 2000 2000 BTI BTI . R 4 PYR D 1 2001 2001 PYR PYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTI . . . J 3 79.975 101.699 0.621 1 57.88 ? C11 BTI 2000 B 1 HETATM 2 O O11 BTI . . . J 3 81.191 101.757 0.519 1 58.82 ? O11 BTI 2000 B 1 HETATM 3 C C10 BTI . . . J 3 79.186 100.578 -0.011 1 55.65 ? C10 BTI 2000 B 1 HETATM 4 C C9 BTI . . . J 3 79.88 100.093 -1.275 1 53.02 ? C9 BTI 2000 B 1 HETATM 5 C C8 BTI . . . J 3 79.166 100.608 -2.511 1 51.72 ? C8 BTI 2000 B 1 HETATM 6 C C7 BTI . . . J 3 80.076 100.487 -3.724 1 51.88 ? C7 BTI 2000 B 1 HETATM 7 C C2 BTI . . . J 3 79.586 101.376 -4.861 1 51.98 ? C2 BTI 2000 B 1 HETATM 8 S S1 BTI . . . J 3 79.884 100.628 -6.437 1 52.76 ? S1 BTI 2000 B 1 HETATM 9 C C6 BTI . . . J 3 79.868 102.17 -7.295 1 52.67 ? C6 BTI 2000 B 1 HETATM 10 C C5 BTI . . . J 3 80.268 103.278 -6.319 1 52.51 ? C5 BTI 2000 B 1 HETATM 11 N N3 BTI . . . J 3 81.687 103.526 -6.553 1 52.27 ? N3 BTI 2000 B 1 HETATM 12 C C3 BTI . . . J 3 82.417 103.113 -5.536 1 52.46 ? C3 BTI 2000 B 1 HETATM 13 O O3 BTI . . . J 3 83.746 103.185 -5.512 1 52.94 ? O3 BTI 2000 B 1 HETATM 14 N N2 BTI . . . J 3 81.66 102.622 -4.563 1 52.05 ? N2 BTI 2000 B 1 HETATM 15 C C4 BTI . . . J 3 80.24 102.756 -4.876 1 52.02 ? C4 BTI 2000 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #