data_3BG5
#
_model_server_result.job_id            VxvCh5HQ4vVD0wbHWum8xQ 
_model_server_result.datetime_utc      '2024-11-13 17:37:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bg5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":2000}' 
#
_entry.id    3BG5 
#
_exptl.entry_id    3BG5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              228.311 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.47 
_cell.angle_gamma         90 
_cell.entry_id            3BG5 
_cell.length_a            96.428 
_cell.length_b            256.083 
_cell.length_c            126.01 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BG5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 1 
A,C,E,F,G,H,L,M,N,O 2 1 
B,D,I,J,K,P,Q,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 M N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 305 A SER 315 1_555 A N GLY 306 A GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C PRO 505 A PRO 513 1_555 A N ASN 506 A ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 A C VAL 757 A VAL 763 1_555 A N ASP 758 A ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C GLU 842 A GLU 849 1_555 A N SER 843 A SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale5 A NZ LYS 1135 A LYS 1144 1_555 F C11 BTI . A BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 B C SER 305 B SER 315 1_555 B N GLY 306 B GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 B C PRO 505 B PRO 513 1_555 B N ASN 506 B ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 B C VAL 757 B VAL 763 1_555 B N ASP 758 B ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale9 B C GLU 842 B GLU 849 1_555 B N SER 843 B SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 B NZ LYS 1135 B LYS 1144 1_555 J C11 BTI . B BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale11 C C SER 305 C SER 315 1_555 C N GLY 306 C GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 C C PRO 505 C PRO 513 1_555 C N ASN 506 C ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale13 C C VAL 757 C VAL 763 1_555 C N ASP 758 C ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale14 C C GLU 842 C GLU 849 1_555 C N SER 843 C SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale15 C NZ LYS 1135 C LYS 1144 1_555 M C11 BTI . C BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale16 D C SER 305 D SER 315 1_555 D N GLY 306 D GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale17 D C PRO 505 D PRO 513 1_555 D N ASN 506 D ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale18 D C VAL 757 D VAL 763 1_555 D N ASP 758 D ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale19 D C GLU 842 D GLU 849 1_555 D N SER 843 D SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 D NZ LYS 1135 D LYS 1144 1_555 Q C11 BTI . D BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 B OD1 ASP 565 B ASP 572 1_555 I MN MN . B MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc2 D OD1 ASP 565 D ASP 572 1_555 P MN MN . D MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
#
_chem_comp.formula           'C10 H16 N2 O2 S' 
_chem_comp.formula_weight    228.311 
_chem_comp.id                BTI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 O11 BTI doub 119 n n 
C11 C10 BTI sing 120 n n 
C11 H11 BTI sing 121 n n 
C10 C9 BTI sing 122 n n 
C10 H102 BTI sing 123 n n 
C10 H103 BTI sing 124 n n 
C9 C8 BTI sing 125 n n 
C9 H92 BTI sing 126 n n 
C9 H93 BTI sing 127 n n 
C8 C7 BTI sing 128 n n 
C8 H82 BTI sing 129 n n 
C8 H83 BTI sing 130 n n 
C7 C2 BTI sing 131 n n 
C7 H72 BTI sing 132 n n 
C7 H73 BTI sing 133 n n 
C2 S1 BTI sing 134 n n 
C2 C4 BTI sing 135 n n 
C2 H2 BTI sing 136 n n 
S1 C6 BTI sing 137 n n 
C6 C5 BTI sing 138 n n 
C6 H62 BTI sing 139 n n 
C6 H63 BTI sing 140 n n 
C5 N3 BTI sing 141 n n 
C5 C4 BTI sing 142 n n 
C5 H5 BTI sing 143 n n 
N3 C3 BTI sing 144 n n 
N3 HN3 BTI sing 145 n n 
C3 O3 BTI doub 146 n n 
C3 N2 BTI sing 147 n n 
N2 C4 BTI sing 148 n n 
N2 HN2 BTI sing 149 n n 
C4 H4 BTI sing 150 n n 
#
_atom_sites.entry_id                     3BG5 
_atom_sites.fract_transf_matrix[1][1]    0.01037 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003666 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003905 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008417 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MN A 1 2002 2002 MN MN . 
F 3 BTI A 1 2000 2000 BTI BTI . 
G 4 PYR A 1 2001 2001 PYR PYR . 
H 5 ATP A 1 2100 2100 ATP ATP . 
I 2 MN B 1 2002 2002 MN MN . 
J 3 BTI B 1 2000 2000 BTI BTI . 
K 4 PYR B 1 2001 2001 PYR PYR . 
L 2 MN C 1 2002 2002 MN MN . 
M 3 BTI C 1 2000 2000 BTI BTI . 
N 4 PYR C 1 2001 2001 PYR PYR . 
O 5 ATP C 1 2100 2100 ATP ATP . 
P 2 MN D 1 2002 2002 MN MN . 
Q 3 BTI D 1 2000 2000 BTI BTI . 
R 4 PYR D 1 2001 2001 PYR PYR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 BTI . . . M 3 54.415 128.471 17.076 1 65.78 ? C11 BTI 2000 C 1 
HETATM 2 O O11 BTI . . . M 3 53.288 128.56 17.527 1 65.88 ? O11 BTI 2000 C 1 
HETATM 3 C C10 BTI . . . M 3 55.494 129.424 17.519 1 63.28 ? C10 BTI 2000 C 1 
HETATM 4 C C9 BTI . . . M 3 54.963 130.853 17.489 1 60.28 ? C9 BTI 2000 C 1 
HETATM 5 C C8 BTI . . . M 3 55.489 131.603 16.274 1 57.83 ? C8 BTI 2000 C 1 
HETATM 6 C C7 BTI . . . M 3 54.495 132.63 15.749 1 55.18 ? C7 BTI 2000 C 1 
HETATM 7 C C2 BTI . . . M 3 55.013 133.181 14.421 1 53.82 ? C2 BTI 2000 C 1 
HETATM 8 S S1 BTI . . . M 3 54.687 134.908 14.277 1 52.69 ? S1 BTI 2000 C 1 
HETATM 9 C C6 BTI . . . M 3 54.813 134.868 12.518 1 52.89 ? C6 BTI 2000 C 1 
HETATM 10 C C5 BTI . . . M 3 54.424 133.482 12.019 1 52.29 ? C5 BTI 2000 C 1 
HETATM 11 N N3 BTI . . . M 3 53.019 133.562 11.655 1 52.12 ? N3 BTI 2000 C 1 
HETATM 12 C C3 BTI . . . M 3 52.26 132.902 12.51 1 52 ? C3 BTI 2000 C 1 
HETATM 13 O O3 BTI . . . M 3 50.942 132.814 12.452 1 52.53 ? O3 BTI 2000 C 1 
HETATM 14 N N2 BTI . . . M 3 52.982 132.326 13.44 1 52.88 ? N2 BTI 2000 C 1 
HETATM 15 C C4 BTI . . . M 3 54.409 132.504 13.194 1 53.1 ? C4 BTI 2000 C 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#