data_3BG5
#
_model_server_result.job_id            UN0mql-ma8f7KagJsTNPYg 
_model_server_result.datetime_utc      '2025-02-25 01:41:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bg5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2100}' 
#
_entry.id    3BG5 
#
_exptl.entry_id    3BG5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.47 
_cell.angle_gamma         90 
_cell.entry_id            3BG5 
_cell.length_a            96.428 
_cell.length_b            256.083 
_cell.length_c            126.01 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BG5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 1 
A,C,E,F,G,H,L,M,N,O 2 1 
B,D,I,J,K,P,Q,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 305 A SER 315 1_555 A N GLY 306 A GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C PRO 505 A PRO 513 1_555 A N ASN 506 A ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 A C VAL 757 A VAL 763 1_555 A N ASP 758 A ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C GLU 842 A GLU 849 1_555 A N SER 843 A SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale5 A NZ LYS 1135 A LYS 1144 1_555 F C11 BTI . A BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 B C SER 305 B SER 315 1_555 B N GLY 306 B GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 B C PRO 505 B PRO 513 1_555 B N ASN 506 B ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 B C VAL 757 B VAL 763 1_555 B N ASP 758 B ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale9 B C GLU 842 B GLU 849 1_555 B N SER 843 B SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 B NZ LYS 1135 B LYS 1144 1_555 J C11 BTI . B BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale11 C C SER 305 C SER 315 1_555 C N GLY 306 C GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 C C PRO 505 C PRO 513 1_555 C N ASN 506 C ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale13 C C VAL 757 C VAL 763 1_555 C N ASP 758 C ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale14 C C GLU 842 C GLU 849 1_555 C N SER 843 C SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale15 C NZ LYS 1135 C LYS 1144 1_555 M C11 BTI . C BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale16 D C SER 305 D SER 315 1_555 D N GLY 306 D GLY 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale17 D C PRO 505 D PRO 513 1_555 D N ASN 506 D ASN 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale18 D C VAL 757 D VAL 763 1_555 D N ASP 758 D ASP 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale19 D C GLU 842 D GLU 849 1_555 D N SER 843 D SER 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 D NZ LYS 1135 D LYS 1144 1_555 Q C11 BTI . D BTI 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 B OD1 ASP 565 B ASP 572 1_555 I MN MN . B MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc2 D OD1 ASP 565 D ASP 572 1_555 P MN MN . D MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     3BG5 
_atom_sites.fract_transf_matrix[1][1]    0.01037 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003666 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003905 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008417 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MN A 1 2002 2002 MN MN . 
F 3 BTI A 1 2000 2000 BTI BTI . 
G 4 PYR A 1 2001 2001 PYR PYR . 
H 5 ATP A 1 2100 2100 ATP ATP . 
I 2 MN B 1 2002 2002 MN MN . 
J 3 BTI B 1 2000 2000 BTI BTI . 
K 4 PYR B 1 2001 2001 PYR PYR . 
L 2 MN C 1 2002 2002 MN MN . 
M 3 BTI C 1 2000 2000 BTI BTI . 
N 4 PYR C 1 2001 2001 PYR PYR . 
O 5 ATP C 1 2100 2100 ATP ATP . 
P 2 MN D 1 2002 2002 MN MN . 
Q 3 BTI D 1 2000 2000 BTI BTI . 
R 4 PYR D 1 2001 2001 PYR PYR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . H 5 84.666 47.996 1.096 1 126.97 ? PG ATP 2100 A 1 
HETATM 2 O O1G ATP . . . H 5 84.826 49.434 1.538 1 126.96 ? O1G ATP 2100 A 1 
HETATM 3 O O2G ATP . . . H 5 84.376 47.035 2.229 1 126.6 ? O2G ATP 2100 A 1 
HETATM 4 O O3G ATP . . . H 5 83.777 47.821 -0.117 1 126.71 ? O3G ATP 2100 A 1 
HETATM 5 P PB ATP . . . H 5 87.486 47.591 1.428 1 125.33 ? PB ATP 2100 A 1 
HETATM 6 O O1B ATP . . . H 5 87.298 46.781 2.691 1 125.37 ? O1B ATP 2100 A 1 
HETATM 7 O O2B ATP . . . H 5 87.972 49.02 1.538 1 124.75 ? O2B ATP 2100 A 1 
HETATM 8 O O3B ATP . . . H 5 86.127 47.56 0.549 1 126.17 ? O3B ATP 2100 A 1 
HETATM 9 P PA ATP . . . H 5 89.696 47.355 -0.333 1 123.43 ? PA ATP 2100 A 1 
HETATM 10 O O1A ATP . . . H 5 90.969 46.823 0.278 1 123.52 ? O1A ATP 2100 A 1 
HETATM 11 O O2A ATP . . . H 5 89.503 48.846 -0.475 1 123.73 ? O2A ATP 2100 A 1 
HETATM 12 O O3A ATP . . . H 5 88.458 46.725 0.478 1 124.33 ? O3A ATP 2100 A 1 
HETATM 13 O O5' ATP . . . H 5 89.512 46.685 -1.785 1 122.1 ? O5' ATP 2100 A 1 
HETATM 14 C C5' ATP . . . H 5 88.628 47.249 -2.755 1 119.86 ? C5' ATP 2100 A 1 
HETATM 15 C C4' ATP . . . H 5 89.362 48.242 -3.654 1 118.08 ? C4' ATP 2100 A 1 
HETATM 16 O O4' ATP . . . H 5 90.771 48.258 -3.389 1 117.25 ? O4' ATP 2100 A 1 
HETATM 17 C C3' ATP . . . H 5 89.188 47.863 -5.112 1 117.39 ? C3' ATP 2100 A 1 
HETATM 18 O O3' ATP . . . H 5 88.214 48.702 -5.731 1 117.46 ? O3' ATP 2100 A 1 
HETATM 19 C C2' ATP . . . H 5 90.554 48.055 -5.734 1 117 ? C2' ATP 2100 A 1 
HETATM 20 O O2' ATP . . . H 5 90.656 49.339 -6.355 1 116.82 ? O2' ATP 2100 A 1 
HETATM 21 C C1' ATP . . . H 5 91.528 47.966 -4.571 1 116.51 ? C1' ATP 2100 A 1 
HETATM 22 N N9 ATP . . . H 5 92.108 46.589 -4.525 1 116.21 ? N9 ATP 2100 A 1 
HETATM 23 C C8 ATP . . . H 5 91.874 45.656 -3.581 1 116.1 ? C8 ATP 2100 A 1 
HETATM 24 N N7 ATP . . . H 5 92.55 44.507 -3.832 1 116.03 ? N7 ATP 2100 A 1 
HETATM 25 C C5 ATP . . . H 5 93.241 44.691 -4.968 1 115.99 ? C5 ATP 2100 A 1 
HETATM 26 C C6 ATP . . . H 5 94.164 43.885 -5.802 1 116.01 ? C6 ATP 2100 A 1 
HETATM 27 N N6 ATP . . . H 5 94.487 42.618 -5.458 1 116.29 ? N6 ATP 2100 A 1 
HETATM 28 N N1 ATP . . . H 5 94.677 44.45 -6.916 1 115.97 ? N1 ATP 2100 A 1 
HETATM 29 C C2 ATP . . . H 5 94.363 45.706 -7.276 1 116.08 ? C2 ATP 2100 A 1 
HETATM 30 N N3 ATP . . . H 5 93.536 46.495 -6.565 1 116.21 ? N3 ATP 2100 A 1 
HETATM 31 C C4 ATP . . . H 5 92.95 46.06 -5.421 1 116.07 ? C4 ATP 2100 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#