data_3BGU
#
_model_server_result.job_id            2fUI2tDsRH07O-HqGV-gyg 
_model_server_result.datetime_utc      '2024-11-19 12:21:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3bgu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":104}' 
#
_entry.id    3BGU 
#
_exptl.entry_id    3BGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.09 
_cell.angle_gamma         90 
_cell.entry_id            3BGU 
_cell.length_a            44.07 
_cell.length_b            35.27 
_cell.length_c            76.63 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3BGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,S 1 1,2 
B,O,P,Q,R,T 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 69.484753 0 74.32455 
3 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 44.07 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 19 A GLY 0 1_555 A N MSE 20 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C MSE 20 A MSE 1 1_555 A N GLY 21 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C PRO 104 A PRO 85 1_555 A N MSE 105 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C MSE 105 A MSE 86 1_555 A N LEU 106 A LEU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 B C GLY 19 B GLY 0 1_555 B N MSE 20 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 B C MSE 20 B MSE 1 1_555 B N GLY 21 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale7 B C PRO 104 B PRO 85 1_555 B N MSE 105 B MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 B C MSE 105 B MSE 86 1_555 B N LEU 106 B LEU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 76 n n 
C1 C2 EDO sing 77 n n 
C1 H11 EDO sing 78 n n 
C1 H12 EDO sing 79 n n 
O1 HO1 EDO sing 80 n n 
C2 O2 EDO sing 81 n n 
C2 H21 EDO sing 82 n n 
C2 H22 EDO sing 83 n n 
O2 HO2 EDO sing 84 n n 
#
_atom_sites.entry_id                     3BGU 
_atom_sites.fract_transf_matrix[1][1]    0.022691 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005695 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028353 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013455 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 101 101 CL CL . 
D 3 EDO A 1 102 3 EDO EDO . 
E 3 EDO A 1 103 4 EDO EDO . 
F 3 EDO A 1 104 5 EDO EDO . 
G 3 EDO A 1 105 6 EDO EDO . 
H 3 EDO A 1 106 7 EDO EDO . 
I 3 EDO A 1 107 9 EDO EDO . 
J 3 EDO A 1 108 10 EDO EDO . 
K 3 EDO A 1 109 11 EDO EDO . 
L 3 EDO A 1 110 13 EDO EDO . 
M 3 EDO A 1 111 14 EDO EDO . 
N 4 NBZ A 1 112 16 NBZ NBZ . 
O 5 ACT B 1 102 102 ACT ACT . 
P 3 EDO B 1 103 8 EDO EDO . 
Q 3 EDO B 1 104 12 EDO EDO . 
R 3 EDO B 1 105 15 EDO EDO . 
S 6 HOH A 1 113 17 HOH HOH . 
S 6 HOH A 2 114 18 HOH HOH . 
S 6 HOH A 3 115 19 HOH HOH . 
S 6 HOH A 4 116 20 HOH HOH . 
S 6 HOH A 5 117 21 HOH HOH . 
S 6 HOH A 6 118 22 HOH HOH . 
S 6 HOH A 7 119 23 HOH HOH . 
S 6 HOH A 8 120 24 HOH HOH . 
S 6 HOH A 9 121 25 HOH HOH . 
S 6 HOH A 10 122 26 HOH HOH . 
S 6 HOH A 11 123 28 HOH HOH . 
S 6 HOH A 12 124 30 HOH HOH . 
S 6 HOH A 13 125 31 HOH HOH . 
S 6 HOH A 14 126 32 HOH HOH . 
S 6 HOH A 15 127 33 HOH HOH . 
S 6 HOH A 16 128 34 HOH HOH . 
S 6 HOH A 17 129 35 HOH HOH . 
S 6 HOH A 18 130 36 HOH HOH . 
S 6 HOH A 19 131 37 HOH HOH . 
S 6 HOH A 20 132 40 HOH HOH . 
S 6 HOH A 21 133 43 HOH HOH . 
S 6 HOH A 22 134 46 HOH HOH . 
S 6 HOH A 23 135 47 HOH HOH . 
S 6 HOH A 24 136 48 HOH HOH . 
S 6 HOH A 25 137 50 HOH HOH . 
S 6 HOH A 26 138 52 HOH HOH . 
S 6 HOH A 27 139 55 HOH HOH . 
S 6 HOH A 28 140 56 HOH HOH . 
S 6 HOH A 29 141 58 HOH HOH . 
S 6 HOH A 30 142 59 HOH HOH . 
S 6 HOH A 31 143 60 HOH HOH . 
S 6 HOH A 32 144 61 HOH HOH . 
S 6 HOH A 33 145 63 HOH HOH . 
S 6 HOH A 34 146 65 HOH HOH . 
S 6 HOH A 35 147 66 HOH HOH . 
S 6 HOH A 36 148 68 HOH HOH . 
S 6 HOH A 37 149 69 HOH HOH . 
S 6 HOH A 38 150 70 HOH HOH . 
S 6 HOH A 39 151 72 HOH HOH . 
S 6 HOH A 40 152 75 HOH HOH . 
S 6 HOH A 41 153 79 HOH HOH . 
S 6 HOH A 42 154 80 HOH HOH . 
S 6 HOH A 43 155 81 HOH HOH . 
S 6 HOH A 44 156 82 HOH HOH . 
S 6 HOH A 45 157 83 HOH HOH . 
S 6 HOH A 46 158 87 HOH HOH . 
S 6 HOH A 47 159 92 HOH HOH . 
S 6 HOH A 48 160 93 HOH HOH . 
S 6 HOH A 49 161 96 HOH HOH . 
S 6 HOH A 50 162 97 HOH HOH . 
S 6 HOH A 51 163 99 HOH HOH . 
S 6 HOH A 52 164 100 HOH HOH . 
S 6 HOH A 53 165 104 HOH HOH . 
S 6 HOH A 54 166 106 HOH HOH . 
S 6 HOH A 55 167 108 HOH HOH . 
S 6 HOH A 56 168 110 HOH HOH . 
S 6 HOH A 57 169 111 HOH HOH . 
S 6 HOH A 58 170 112 HOH HOH . 
S 6 HOH A 59 171 113 HOH HOH . 
S 6 HOH A 60 172 117 HOH HOH . 
S 6 HOH A 61 173 118 HOH HOH . 
S 6 HOH A 62 174 119 HOH HOH . 
S 6 HOH A 63 175 120 HOH HOH . 
S 6 HOH A 64 176 121 HOH HOH . 
S 6 HOH A 65 177 124 HOH HOH . 
S 6 HOH A 66 178 125 HOH HOH . 
S 6 HOH A 67 179 129 HOH HOH . 
S 6 HOH A 68 180 131 HOH HOH . 
S 6 HOH A 69 181 134 HOH HOH . 
S 6 HOH A 70 182 135 HOH HOH . 
S 6 HOH A 71 183 136 HOH HOH . 
S 6 HOH A 72 184 139 HOH HOH . 
S 6 HOH A 73 185 140 HOH HOH . 
S 6 HOH A 74 186 142 HOH HOH . 
S 6 HOH A 75 187 143 HOH HOH . 
S 6 HOH A 76 188 148 HOH HOH . 
S 6 HOH A 77 189 149 HOH HOH . 
S 6 HOH A 78 190 150 HOH HOH . 
S 6 HOH A 79 191 151 HOH HOH . 
S 6 HOH A 80 192 153 HOH HOH . 
S 6 HOH A 81 193 160 HOH HOH . 
S 6 HOH A 82 194 161 HOH HOH . 
S 6 HOH A 83 195 162 HOH HOH . 
S 6 HOH A 84 196 163 HOH HOH . 
S 6 HOH A 85 197 164 HOH HOH . 
S 6 HOH A 86 198 169 HOH HOH . 
S 6 HOH A 87 199 179 HOH HOH . 
S 6 HOH A 88 200 180 HOH HOH . 
S 6 HOH A 89 201 181 HOH HOH . 
S 6 HOH A 90 202 184 HOH HOH . 
S 6 HOH A 91 203 186 HOH HOH . 
S 6 HOH A 92 204 187 HOH HOH . 
S 6 HOH A 93 205 188 HOH HOH . 
S 6 HOH A 94 206 192 HOH HOH . 
T 6 HOH B 1 106 27 HOH HOH . 
T 6 HOH B 2 107 29 HOH HOH . 
T 6 HOH B 3 108 38 HOH HOH . 
T 6 HOH B 4 109 39 HOH HOH . 
T 6 HOH B 5 110 41 HOH HOH . 
T 6 HOH B 6 111 42 HOH HOH . 
T 6 HOH B 7 112 44 HOH HOH . 
T 6 HOH B 8 113 45 HOH HOH . 
T 6 HOH B 9 114 49 HOH HOH . 
T 6 HOH B 10 115 51 HOH HOH . 
T 6 HOH B 11 116 53 HOH HOH . 
T 6 HOH B 12 117 54 HOH HOH . 
T 6 HOH B 13 118 57 HOH HOH . 
T 6 HOH B 14 119 62 HOH HOH . 
T 6 HOH B 15 120 64 HOH HOH . 
T 6 HOH B 16 121 67 HOH HOH . 
T 6 HOH B 17 122 71 HOH HOH . 
T 6 HOH B 18 123 73 HOH HOH . 
T 6 HOH B 19 124 74 HOH HOH . 
T 6 HOH B 20 125 76 HOH HOH . 
T 6 HOH B 21 126 77 HOH HOH . 
T 6 HOH B 22 127 78 HOH HOH . 
T 6 HOH B 23 128 84 HOH HOH . 
T 6 HOH B 24 129 85 HOH HOH . 
T 6 HOH B 25 130 86 HOH HOH . 
T 6 HOH B 26 131 88 HOH HOH . 
T 6 HOH B 27 132 89 HOH HOH . 
T 6 HOH B 28 133 90 HOH HOH . 
T 6 HOH B 29 134 91 HOH HOH . 
T 6 HOH B 30 135 94 HOH HOH . 
T 6 HOH B 31 136 95 HOH HOH . 
T 6 HOH B 32 137 98 HOH HOH . 
T 6 HOH B 33 138 101 HOH HOH . 
T 6 HOH B 34 139 102 HOH HOH . 
T 6 HOH B 35 140 103 HOH HOH . 
T 6 HOH B 36 141 105 HOH HOH . 
T 6 HOH B 37 142 107 HOH HOH . 
T 6 HOH B 38 143 109 HOH HOH . 
T 6 HOH B 39 144 114 HOH HOH . 
T 6 HOH B 40 145 115 HOH HOH . 
T 6 HOH B 41 146 116 HOH HOH . 
T 6 HOH B 42 147 122 HOH HOH . 
T 6 HOH B 43 148 123 HOH HOH . 
T 6 HOH B 44 149 126 HOH HOH . 
T 6 HOH B 45 150 127 HOH HOH . 
T 6 HOH B 46 151 128 HOH HOH . 
T 6 HOH B 47 152 130 HOH HOH . 
T 6 HOH B 48 153 132 HOH HOH . 
T 6 HOH B 49 154 133 HOH HOH . 
T 6 HOH B 50 155 137 HOH HOH . 
T 6 HOH B 51 156 138 HOH HOH . 
T 6 HOH B 52 157 141 HOH HOH . 
T 6 HOH B 53 158 144 HOH HOH . 
T 6 HOH B 54 159 145 HOH HOH . 
T 6 HOH B 55 160 146 HOH HOH . 
T 6 HOH B 56 161 147 HOH HOH . 
T 6 HOH B 57 162 152 HOH HOH . 
T 6 HOH B 58 163 154 HOH HOH . 
T 6 HOH B 59 164 155 HOH HOH . 
T 6 HOH B 60 165 156 HOH HOH . 
T 6 HOH B 61 166 157 HOH HOH . 
T 6 HOH B 62 167 158 HOH HOH . 
T 6 HOH B 63 168 159 HOH HOH . 
T 6 HOH B 64 169 165 HOH HOH . 
T 6 HOH B 65 170 166 HOH HOH . 
T 6 HOH B 66 171 167 HOH HOH . 
T 6 HOH B 67 172 168 HOH HOH . 
T 6 HOH B 68 173 170 HOH HOH . 
T 6 HOH B 69 174 171 HOH HOH . 
T 6 HOH B 70 175 172 HOH HOH . 
T 6 HOH B 71 176 173 HOH HOH . 
T 6 HOH B 72 177 174 HOH HOH . 
T 6 HOH B 73 178 175 HOH HOH . 
T 6 HOH B 74 179 176 HOH HOH . 
T 6 HOH B 75 180 177 HOH HOH . 
T 6 HOH B 76 181 178 HOH HOH . 
T 6 HOH B 77 182 182 HOH HOH . 
T 6 HOH B 78 183 183 HOH HOH . 
T 6 HOH B 79 184 185 HOH HOH . 
T 6 HOH B 80 185 189 HOH HOH . 
T 6 HOH B 81 186 190 HOH HOH . 
T 6 HOH B 82 187 191 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . Q 3 8.366 -39.956 4.384 1 34.97 ? C1 EDO 104 B 1 
HETATM 2 O O1 EDO . . . Q 3 8.51 -39.633 5.773 1 36.31 ? O1 EDO 104 B 1 
HETATM 3 C C2 EDO . . . Q 3 8.282 -41.469 4.215 1 36.99 ? C2 EDO 104 B 1 
HETATM 4 O O2 EDO . . . Q 3 9.559 -41.993 3.828 1 32.34 ? O2 EDO 104 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           454 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           4 
#