data_3BGX # _model_server_result.job_id 08vnkx3nvs6f3wy1jA8Ogw _model_server_result.datetime_utc '2024-11-23 20:06:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bgx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":266}' # _entry.id 3BGX # _exptl.entry_id 3BGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.44 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-({4-[(6aR)-3-amino-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BGX _cell.length_a 72.03 _cell.length_b 72.03 _cell.length_c 115.46 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 76.973333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id CXM _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CXM _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id LYS _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LYS _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.324 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H23 N7 O6' _chem_comp.formula_weight 457.44 _chem_comp.id MEF _chem_comp.mon_nstd_flag . _chem_comp.name 'N-({4-[(6aR)-3-amino-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5,10-methylene,5,6,7,8-tetrahydrofolate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OE2 CD MEF doub 240 n n CG CD MEF sing 241 n n CD OE1 MEF sing 242 n n OE1 HOE1 MEF sing 243 n n CB CG MEF sing 244 n n CG HG MEF sing 245 n n CG HGA MEF sing 246 n n CA CB MEF sing 247 n n CB HB MEF sing 248 n n CB HBA MEF sing 249 n n CA N MEF sing 250 n n CA CT MEF sing 251 n n CA HA MEF sing 252 n n O2 CT MEF doub 253 n n CT O1 MEF sing 254 n n O1 HO1 MEF sing 255 n n C N MEF sing 256 n n N HN MEF sing 257 n n O C MEF doub 258 n n C C11 MEF sing 259 n n CM N10 MEF sing 260 n n C9 N10 MEF sing 261 n n C14 N10 MEF sing 262 n n N5 CM MEF sing 263 n n CM HM MEF sing 264 n n CM HMA MEF sing 265 n n C4A N5 MEF sing 266 n n N5 C6 MEF sing 267 n n C6 C9 MEF sing 268 n n C9 H9 MEF sing 269 n n C9 H9A MEF sing 270 n n C7 C6 MEF sing 271 n n C6 H6 MEF sing 272 n n N8 C7 MEF sing 273 n n C7 H7 MEF sing 274 n n C7 H7A MEF sing 275 n n C8A N8 MEF sing 276 n n N8 HN8 MEF sing 277 n n N1 C8A MEF sing 278 n n C8A C4A MEF doub 279 n n C4 C4A MEF sing 280 n n C2 N1 MEF doub 281 n n NA2 C2 MEF sing 282 n n C2 N3 MEF sing 283 n n NA2 HNA2 MEF sing 284 n n NA2 HNAA MEF sing 285 n n N3 C4 MEF sing 286 n n N3 HN3 MEF sing 287 n n C4 O4 MEF doub 288 n n C16 C11 MEF doub 289 n y C11 C12 MEF sing 290 n y C12 C13 MEF doub 291 n y C12 H12 MEF sing 292 n n C14 C13 MEF sing 293 n y C13 H13 MEF sing 294 n n C16 C15 MEF sing 295 n y C16 H16 MEF sing 296 n n C15 C14 MEF doub 297 n y C15 H15 MEF sing 298 n n # _atom_sites.entry_id 3BGX _atom_sites.fract_transf_matrix[1][1] 0.013883 _atom_sites.fract_transf_matrix[1][2] 0.008015 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 267 267 SO4 SO4 . C 2 SO4 A 1 268 268 SO4 SO4 . D 3 TMP A 1 265 265 TMP TMP . E 4 MEF A 1 266 266 MEF MEF . F 5 HOH A 1 269 1 HOH HOH . F 5 HOH A 2 270 2 HOH HOH . F 5 HOH A 3 271 3 HOH HOH . F 5 HOH A 4 272 4 HOH HOH . F 5 HOH A 5 273 5 HOH HOH . F 5 HOH A 6 274 6 HOH HOH . F 5 HOH A 7 275 7 HOH HOH . F 5 HOH A 8 276 8 HOH HOH . F 5 HOH A 9 277 9 HOH HOH . F 5 HOH A 10 278 10 HOH HOH . F 5 HOH A 11 279 11 HOH HOH . F 5 HOH A 12 280 12 HOH HOH . F 5 HOH A 13 281 13 HOH HOH . F 5 HOH A 14 282 14 HOH HOH . F 5 HOH A 15 283 15 HOH HOH . F 5 HOH A 16 284 16 HOH HOH . F 5 HOH A 17 285 17 HOH HOH . F 5 HOH A 18 286 18 HOH HOH . F 5 HOH A 19 287 19 HOH HOH . F 5 HOH A 20 288 20 HOH HOH . F 5 HOH A 21 289 21 HOH HOH . F 5 HOH A 22 290 22 HOH HOH . F 5 HOH A 23 291 23 HOH HOH . F 5 HOH A 24 292 24 HOH HOH . F 5 HOH A 25 293 25 HOH HOH . F 5 HOH A 26 294 26 HOH HOH . F 5 HOH A 27 295 27 HOH HOH . F 5 HOH A 28 296 28 HOH HOH . F 5 HOH A 29 297 29 HOH HOH . F 5 HOH A 30 298 30 HOH HOH . F 5 HOH A 31 299 31 HOH HOH . F 5 HOH A 32 300 32 HOH HOH . F 5 HOH A 33 301 33 HOH HOH . F 5 HOH A 34 302 34 HOH HOH . F 5 HOH A 35 303 35 HOH HOH . F 5 HOH A 36 304 36 HOH HOH . F 5 HOH A 37 305 37 HOH HOH . F 5 HOH A 38 306 38 HOH HOH . F 5 HOH A 39 307 39 HOH HOH . F 5 HOH A 40 308 40 HOH HOH . F 5 HOH A 41 309 41 HOH HOH . F 5 HOH A 42 310 42 HOH HOH . F 5 HOH A 43 311 43 HOH HOH . F 5 HOH A 44 312 44 HOH HOH . F 5 HOH A 45 313 45 HOH HOH . F 5 HOH A 46 314 46 HOH HOH . F 5 HOH A 47 315 47 HOH HOH . F 5 HOH A 48 316 48 HOH HOH . F 5 HOH A 49 317 49 HOH HOH . F 5 HOH A 50 318 50 HOH HOH . F 5 HOH A 51 319 51 HOH HOH . F 5 HOH A 52 320 52 HOH HOH . F 5 HOH A 53 321 53 HOH HOH . F 5 HOH A 54 322 54 HOH HOH . F 5 HOH A 55 323 55 HOH HOH . F 5 HOH A 56 324 56 HOH HOH . F 5 HOH A 57 325 57 HOH HOH . F 5 HOH A 58 326 58 HOH HOH . F 5 HOH A 59 327 59 HOH HOH . F 5 HOH A 60 328 60 HOH HOH . F 5 HOH A 61 329 61 HOH HOH . F 5 HOH A 62 330 62 HOH HOH . F 5 HOH A 63 331 63 HOH HOH . F 5 HOH A 64 332 64 HOH HOH . F 5 HOH A 65 333 65 HOH HOH . F 5 HOH A 66 334 66 HOH HOH . F 5 HOH A 67 335 67 HOH HOH . F 5 HOH A 68 336 68 HOH HOH . F 5 HOH A 69 337 69 HOH HOH . F 5 HOH A 70 338 70 HOH HOH . F 5 HOH A 71 339 71 HOH HOH . F 5 HOH A 72 340 72 HOH HOH . F 5 HOH A 73 341 73 HOH HOH . F 5 HOH A 74 342 74 HOH HOH . F 5 HOH A 75 343 75 HOH HOH . F 5 HOH A 76 344 76 HOH HOH . F 5 HOH A 77 345 77 HOH HOH . F 5 HOH A 78 346 78 HOH HOH . F 5 HOH A 79 347 79 HOH HOH . F 5 HOH A 80 348 80 HOH HOH . F 5 HOH A 81 349 81 HOH HOH . F 5 HOH A 82 350 82 HOH HOH . F 5 HOH A 83 351 83 HOH HOH . F 5 HOH A 84 352 84 HOH HOH . F 5 HOH A 85 353 85 HOH HOH . F 5 HOH A 86 354 86 HOH HOH . F 5 HOH A 87 355 87 HOH HOH . F 5 HOH A 88 356 88 HOH HOH . F 5 HOH A 89 357 89 HOH HOH . F 5 HOH A 90 358 90 HOH HOH . F 5 HOH A 91 359 91 HOH HOH . F 5 HOH A 92 360 92 HOH HOH . F 5 HOH A 93 361 93 HOH HOH . F 5 HOH A 94 362 94 HOH HOH . F 5 HOH A 95 363 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OE2 MEF . . . E 4 43.954 27.62 44.485 1 47.65 ? OE2 MEF 266 A 1 HETATM 2 C CD MEF . . . E 4 44.679 26.884 45.155 1 44.98 ? CD MEF 266 A 1 HETATM 3 O OE1 MEF . . . E 4 44.297 26.67 46.415 1 46.38 ? OE1 MEF 266 A 1 HETATM 4 C CG MEF . . . E 4 45.943 26.224 44.597 1 41.4 ? CG MEF 266 A 1 HETATM 5 C CB MEF . . . E 4 46.185 26.548 43.107 1 39.56 ? CB MEF 266 A 1 HETATM 6 C CA MEF . . . E 4 46.858 25.403 42.317 1 39.1 ? CA MEF 266 A 1 HETATM 7 C CT MEF . . . E 4 48.252 25.052 42.782 1 39.15 ? CT MEF 266 A 1 HETATM 8 O O1 MEF . . . E 4 48.582 23.895 43.404 1 36.78 ? O1 MEF 266 A 1 HETATM 9 O O2 MEF . . . E 4 49.102 25.901 42.551 1 39.63 ? O2 MEF 266 A 1 HETATM 10 N N MEF . . . E 4 46.018 24.226 42.338 1 38.27 ? N MEF 266 A 1 HETATM 11 C C MEF . . . E 4 45.06 24.072 41.422 1 37.3 ? C MEF 266 A 1 HETATM 12 O O MEF . . . E 4 44.805 24.921 40.578 1 37.42 ? O MEF 266 A 1 HETATM 13 N N10 MEF . . . E 4 42.049 19.134 41.518 1 36.29 ? N10 MEF 266 A 1 HETATM 14 C CM MEF . . . E 4 42.69 18.256 40.509 1 32.91 ? CM MEF 266 A 1 HETATM 15 N N5 MEF . . . E 4 41.987 18.713 39.268 1 27.02 ? N5 MEF 266 A 1 HETATM 16 C C9 MEF . . . E 4 40.595 19.223 41.142 1 31.98 ? C9 MEF 266 A 1 HETATM 17 C C6 MEF . . . E 4 40.554 18.803 39.686 1 29.11 ? C6 MEF 266 A 1 HETATM 18 C C7 MEF . . . E 4 39.883 19.769 38.782 1 27.44 ? C7 MEF 266 A 1 HETATM 19 N N8 MEF . . . E 4 40.259 19.391 37.387 1 25.79 ? N8 MEF 266 A 1 HETATM 20 C C8A MEF . . . E 4 41.562 19.295 37.037 1 25.56 ? C8A MEF 266 A 1 HETATM 21 C C4A MEF . . . E 4 42.481 18.936 38.016 1 25.35 ? C4A MEF 266 A 1 HETATM 22 N N1 MEF . . . E 4 41.949 19.556 35.766 1 24.11 ? N1 MEF 266 A 1 HETATM 23 C C2 MEF . . . E 4 43.25 19.451 35.44 1 25.35 ? C2 MEF 266 A 1 HETATM 24 N NA2 MEF . . . E 4 43.612 19.698 34.18 1 25.13 ? NA2 MEF 266 A 1 HETATM 25 N N3 MEF . . . E 4 44.182 19.107 36.354 1 24.8 ? N3 MEF 266 A 1 HETATM 26 C C4 MEF . . . E 4 43.837 18.842 37.629 1 25.06 ? C4 MEF 266 A 1 HETATM 27 O O4 MEF . . . E 4 44.728 18.519 38.444 1 25.05 ? O4 MEF 266 A 1 HETATM 28 C C11 MEF . A . E 4 44.281 22.79 41.428 0.5 37.59 ? C11 MEF 266 A 1 HETATM 29 C C11 MEF . B . E 4 44.272 22.805 41.445 0.5 37.6 ? C11 MEF 266 A 1 HETATM 30 C C12 MEF . A . E 4 44.81 21.632 42.017 0.5 37.09 ? C12 MEF 266 A 1 HETATM 31 C C12 MEF . B . E 4 44.004 22.155 42.653 0.5 37.28 ? C12 MEF 266 A 1 HETATM 32 C C13 MEF . A . E 4 44.069 20.469 42.033 0.5 37.06 ? C13 MEF 266 A 1 HETATM 33 C C13 MEF . B . E 4 43.284 20.973 42.672 0.5 37.15 ? C13 MEF 266 A 1 HETATM 34 C C16 MEF . A . E 4 43.021 22.772 40.837 0.5 36.93 ? C16 MEF 266 A 1 HETATM 35 C C16 MEF . B . E 4 43.826 22.28 40.247 0.5 36.8 ? C16 MEF 266 A 1 HETATM 36 C C15 MEF . A . E 4 42.282 21.604 40.853 0.5 36.77 ? C15 MEF 266 A 1 HETATM 37 C C15 MEF . B . E 4 43.109 21.112 40.272 0.5 36.96 ? C15 MEF 266 A 1 HETATM 38 C C14 MEF . A . E 4 42.796 20.449 41.465 0.5 36.99 ? C14 MEF 266 A 1 HETATM 39 C C14 MEF . B . E 4 42.814 20.445 41.476 0.5 37.03 ? C14 MEF 266 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #