data_3BGZ # _model_server_result.job_id SpZYDrnt3Zw_hItqI_I-Jg _model_server_result.datetime_utc '2025-05-23 05:19:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":314}' # _entry.id 3BGZ # _exptl.entry_id 3BGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,3-diphenyl-1H-indole-7-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3BGZ _cell.length_a 98.13 _cell.length_b 98.13 _cell.length_c 80.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 280 A SER 260 1_555 A N SEP 281 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C SEP 281 A SEP 261 1_555 A N GLU 282 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C21 H15 N O2' _chem_comp.formula_weight 313.349 _chem_comp.id VX3 _chem_comp.mon_nstd_flag . _chem_comp.name '2,3-diphenyl-1H-indole-7-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C3 VX3 doub 394 n n C17 C16 VX3 sing 395 n y C9 C16 VX3 doub 396 n y C16 C23 VX3 sing 397 n y C20 C19 VX3 doub 398 n y C19 C18 VX3 sing 399 n y C19 H19 VX3 sing 400 n n C5 C3 VX3 sing 401 n n C3 O4 VX3 sing 402 n n O4 HO4 VX3 sing 403 n n C6 C5 VX3 sing 404 n y C5 C26 VX3 doub 405 n y N7 C6 VX3 sing 406 n y C23 C6 VX3 doub 407 n y C9 N7 VX3 sing 408 n y C10 C9 VX3 sing 409 n y C11 C10 VX3 doub 410 n y C15 C10 VX3 sing 411 n y C12 C11 VX3 sing 412 n y C11 H11 VX3 sing 413 n n C13 C12 VX3 doub 414 n y C12 H12 VX3 sing 415 n n C13 C14 VX3 sing 416 n y C13 H13 VX3 sing 417 n n C14 C15 VX3 doub 418 n y C14 H14 VX3 sing 419 n n C15 H15 VX3 sing 420 n n C22 C17 VX3 sing 421 n y C17 C18 VX3 doub 422 n y C18 H18 VX3 sing 423 n n C21 C20 VX3 sing 424 n y C20 H20 VX3 sing 425 n n C21 C22 VX3 doub 426 n y C21 H21 VX3 sing 427 n n C22 H22 VX3 sing 428 n n C23 C24 VX3 sing 429 n y C24 C25 VX3 doub 430 n y C24 H24 VX3 sing 431 n n C25 C26 VX3 sing 432 n y C25 H25 VX3 sing 433 n n C26 H26 VX3 sing 434 n n N7 HN7 VX3 sing 435 n n # _atom_sites.entry_id 3BGZ _atom_sites.fract_transf_matrix[1][1] 0.010191 _atom_sites.fract_transf_matrix[1][2] 0.005884 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VX3 A 1 314 1 VX3 VX3 . C 3 HOH A 1 315 1 HOH HOH . C 3 HOH A 2 316 2 HOH HOH . C 3 HOH A 3 317 3 HOH HOH . C 3 HOH A 4 318 4 HOH HOH . C 3 HOH A 5 319 5 HOH HOH . C 3 HOH A 6 320 6 HOH HOH . C 3 HOH A 7 321 7 HOH HOH . C 3 HOH A 8 322 8 HOH HOH . C 3 HOH A 9 323 9 HOH HOH . C 3 HOH A 10 324 10 HOH HOH . C 3 HOH A 11 325 11 HOH HOH . C 3 HOH A 12 326 12 HOH HOH . C 3 HOH A 13 327 13 HOH HOH . C 3 HOH A 14 328 14 HOH HOH . C 3 HOH A 15 329 15 HOH HOH . C 3 HOH A 16 330 16 HOH HOH . C 3 HOH A 17 331 17 HOH HOH . C 3 HOH A 18 332 18 HOH HOH . C 3 HOH A 19 333 19 HOH HOH . C 3 HOH A 20 334 20 HOH HOH . C 3 HOH A 21 335 21 HOH HOH . C 3 HOH A 22 336 22 HOH HOH . C 3 HOH A 23 337 23 HOH HOH . C 3 HOH A 24 338 24 HOH HOH . C 3 HOH A 25 339 25 HOH HOH . C 3 HOH A 26 340 26 HOH HOH . C 3 HOH A 27 341 27 HOH HOH . C 3 HOH A 28 342 28 HOH HOH . C 3 HOH A 29 343 29 HOH HOH . C 3 HOH A 30 344 30 HOH HOH . C 3 HOH A 31 345 31 HOH HOH . C 3 HOH A 32 346 32 HOH HOH . C 3 HOH A 33 347 33 HOH HOH . C 3 HOH A 34 348 34 HOH HOH . C 3 HOH A 35 349 35 HOH HOH . C 3 HOH A 36 350 36 HOH HOH . C 3 HOH A 37 351 37 HOH HOH . C 3 HOH A 38 352 38 HOH HOH . C 3 HOH A 39 353 39 HOH HOH . C 3 HOH A 40 354 40 HOH HOH . C 3 HOH A 41 355 41 HOH HOH . C 3 HOH A 42 356 42 HOH HOH . C 3 HOH A 43 357 43 HOH HOH . C 3 HOH A 44 358 44 HOH HOH . C 3 HOH A 45 359 45 HOH HOH . C 3 HOH A 46 360 46 HOH HOH . C 3 HOH A 47 361 47 HOH HOH . C 3 HOH A 48 362 48 HOH HOH . C 3 HOH A 49 363 49 HOH HOH . C 3 HOH A 50 364 50 HOH HOH . C 3 HOH A 51 365 51 HOH HOH . C 3 HOH A 52 366 52 HOH HOH . C 3 HOH A 53 367 53 HOH HOH . C 3 HOH A 54 368 54 HOH HOH . C 3 HOH A 55 369 56 HOH HOH . C 3 HOH A 56 370 57 HOH HOH . C 3 HOH A 57 371 58 HOH HOH . C 3 HOH A 58 372 59 HOH HOH . C 3 HOH A 59 373 60 HOH HOH . C 3 HOH A 60 374 61 HOH HOH . C 3 HOH A 61 375 62 HOH HOH . C 3 HOH A 62 376 63 HOH HOH . C 3 HOH A 63 377 64 HOH HOH . C 3 HOH A 64 378 65 HOH HOH . C 3 HOH A 65 379 66 HOH HOH . C 3 HOH A 66 380 67 HOH HOH . C 3 HOH A 67 381 68 HOH HOH . C 3 HOH A 68 382 69 HOH HOH . C 3 HOH A 69 383 71 HOH HOH . C 3 HOH A 70 384 72 HOH HOH . C 3 HOH A 71 385 73 HOH HOH . C 3 HOH A 72 386 74 HOH HOH . C 3 HOH A 73 387 75 HOH HOH . C 3 HOH A 74 388 76 HOH HOH . C 3 HOH A 75 389 77 HOH HOH . C 3 HOH A 76 390 78 HOH HOH . C 3 HOH A 77 391 79 HOH HOH . C 3 HOH A 78 392 80 HOH HOH . C 3 HOH A 79 393 81 HOH HOH . C 3 HOH A 80 394 82 HOH HOH . C 3 HOH A 81 395 83 HOH HOH . C 3 HOH A 82 396 86 HOH HOH . C 3 HOH A 83 397 87 HOH HOH . C 3 HOH A 84 398 88 HOH HOH . C 3 HOH A 85 399 89 HOH HOH . C 3 HOH A 86 400 91 HOH HOH . C 3 HOH A 87 401 93 HOH HOH . C 3 HOH A 88 402 94 HOH HOH . C 3 HOH A 89 403 95 HOH HOH . C 3 HOH A 90 404 98 HOH HOH . C 3 HOH A 91 405 99 HOH HOH . C 3 HOH A 92 406 101 HOH HOH . C 3 HOH A 93 407 102 HOH HOH . C 3 HOH A 94 408 103 HOH HOH . C 3 HOH A 95 409 104 HOH HOH . C 3 HOH A 96 410 105 HOH HOH . C 3 HOH A 97 411 107 HOH HOH . C 3 HOH A 98 412 108 HOH HOH . C 3 HOH A 99 413 109 HOH HOH . C 3 HOH A 100 414 110 HOH HOH . C 3 HOH A 101 415 111 HOH HOH . C 3 HOH A 102 416 112 HOH HOH . C 3 HOH A 103 417 113 HOH HOH . C 3 HOH A 104 418 114 HOH HOH . C 3 HOH A 105 419 115 HOH HOH . C 3 HOH A 106 420 116 HOH HOH . C 3 HOH A 107 421 118 HOH HOH . C 3 HOH A 108 422 119 HOH HOH . C 3 HOH A 109 423 120 HOH HOH . C 3 HOH A 110 424 121 HOH HOH . C 3 HOH A 111 425 123 HOH HOH . C 3 HOH A 112 426 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 VX3 . . . B 2 -16.353 34.639 1.306 1 28.29 ? O2 VX3 314 A 1 HETATM 2 C C16 VX3 . . . B 2 -19.469 37.586 -1.023 1 28.85 ? C16 VX3 314 A 1 HETATM 3 C C19 VX3 . . . B 2 -22.352 39.879 -1.977 1 29.64 ? C19 VX3 314 A 1 HETATM 4 C C3 VX3 . . . B 2 -16.636 35.537 2.261 1 29.08 ? C3 VX3 314 A 1 HETATM 5 O O4 VX3 . . . B 2 -15.997 35.542 3.31 1 30.15 ? O4 VX3 314 A 1 HETATM 6 C C5 VX3 . . . B 2 -17.671 36.548 1.986 1 29.63 ? C5 VX3 314 A 1 HETATM 7 C C6 VX3 . . . B 2 -18.184 36.687 0.672 1 29.35 ? C6 VX3 314 A 1 HETATM 8 N N7 VX3 . . . B 2 -17.957 36.014 -0.504 1 29.15 ? N7 VX3 314 A 1 HETATM 9 C C9 VX3 . . . B 2 -18.705 36.549 -1.523 1 29.41 ? C9 VX3 314 A 1 HETATM 10 C C10 VX3 . . . B 2 -18.694 36.03 -2.915 1 30.44 ? C10 VX3 314 A 1 HETATM 11 C C11 VX3 . . . B 2 -19.878 36.024 -3.684 1 30.22 ? C11 VX3 314 A 1 HETATM 12 C C12 VX3 . . . B 2 -19.854 35.527 -4.979 1 31.88 ? C12 VX3 314 A 1 HETATM 13 C C13 VX3 . . . B 2 -18.669 35.029 -5.512 1 30.67 ? C13 VX3 314 A 1 HETATM 14 C C14 VX3 . . . B 2 -17.504 35.011 -4.748 1 29.41 ? C14 VX3 314 A 1 HETATM 15 C C15 VX3 . . . B 2 -17.509 35.501 -3.459 1 29.39 ? C15 VX3 314 A 1 HETATM 16 C C17 VX3 . . . B 2 -20.369 38.526 -1.75 1 30.02 ? C17 VX3 314 A 1 HETATM 17 C C18 VX3 . . . B 2 -21.609 38.952 -1.253 1 29.89 ? C18 VX3 314 A 1 HETATM 18 C C20 VX3 . . . B 2 -21.872 40.405 -3.177 1 29.3 ? C20 VX3 314 A 1 HETATM 19 C C21 VX3 . . . B 2 -20.633 40.014 -3.668 1 28.89 ? C21 VX3 314 A 1 HETATM 20 C C22 VX3 . . . B 2 -19.885 39.096 -2.954 1 28.97 ? C22 VX3 314 A 1 HETATM 21 C C23 VX3 . . . B 2 -19.125 37.695 0.406 1 28.43 ? C23 VX3 314 A 1 HETATM 22 C C24 VX3 . . . B 2 -19.547 38.542 1.437 1 28.47 ? C24 VX3 314 A 1 HETATM 23 C C25 VX3 . . . B 2 -19.054 38.406 2.716 1 28.22 ? C25 VX3 314 A 1 HETATM 24 C C26 VX3 . . . B 2 -18.102 37.426 2.993 1 29.7 ? C26 VX3 314 A 1 # _model_server_stats.io_time_ms 108 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #