data_3BHD # _model_server_result.job_id SpXNAZBuW15wNquRCwdY_Q _model_server_result.datetime_utc '2024-11-25 06:55:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":216}' # _entry.id 3BHD # _exptl.entry_id 3BHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.97 _cell.angle_gamma 90 _cell.entry_id 3BHD _cell.length_a 60.77 _cell.length_b 46.81 _cell.length_c 71.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,O 1 1 B,G,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G NA NA . B NA 216 1_555 H O5 CIT . B CIT 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? metalc ? metalc2 G NA NA . B NA 216 1_555 H O7 CIT . B CIT 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? metalc ? metalc3 G NA NA . B NA 216 1_555 I O7 CIT . B CIT 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? metalc ? metalc4 G NA NA . B NA 216 1_555 I O5 CIT . B CIT 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.529 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3BHD _atom_sites.fract_transf_matrix[1][1] 0.016455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007316 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 216 216 SO4 SO4 . D 3 CL A 1 217 217 CL CL . E 3 CL A 1 218 218 CL CL . F 4 CIT A 1 219 219 CIT CIT . G 5 NA B 1 216 216 NA NA . H 4 CIT B 1 217 217 CIT CIT . I 4 CIT B 1 218 218 CIT CIT . J 6 GOL B 1 219 219 GOL GOL . K 6 GOL B 1 220 220 GOL GOL . L 6 GOL B 1 221 221 GOL GOL . M 6 GOL B 1 222 222 GOL GOL . N 6 GOL B 1 223 223 GOL GOL . O 7 HOH A 1 220 220 HOH HOH . O 7 HOH A 2 221 221 HOH HOH . O 7 HOH A 3 222 222 HOH HOH . O 7 HOH A 4 223 223 HOH HOH . O 7 HOH A 5 224 224 HOH HOH . O 7 HOH A 6 225 225 HOH HOH . O 7 HOH A 7 226 226 HOH HOH . O 7 HOH A 8 227 227 HOH HOH . O 7 HOH A 9 228 228 HOH HOH . O 7 HOH A 10 229 229 HOH HOH . O 7 HOH A 11 230 230 HOH HOH . O 7 HOH A 12 231 231 HOH HOH . O 7 HOH A 13 232 232 HOH HOH . O 7 HOH A 14 233 233 HOH HOH . O 7 HOH A 15 234 234 HOH HOH . O 7 HOH A 16 235 235 HOH HOH . O 7 HOH A 17 236 236 HOH HOH . O 7 HOH A 18 237 237 HOH HOH . O 7 HOH A 19 238 238 HOH HOH . O 7 HOH A 20 239 239 HOH HOH . O 7 HOH A 21 240 240 HOH HOH . O 7 HOH A 22 241 241 HOH HOH . O 7 HOH A 23 242 242 HOH HOH . O 7 HOH A 24 243 243 HOH HOH . O 7 HOH A 25 244 244 HOH HOH . O 7 HOH A 26 245 245 HOH HOH . O 7 HOH A 27 246 246 HOH HOH . O 7 HOH A 28 247 247 HOH HOH . O 7 HOH A 29 248 248 HOH HOH . O 7 HOH A 30 249 249 HOH HOH . O 7 HOH A 31 250 250 HOH HOH . O 7 HOH A 32 251 251 HOH HOH . O 7 HOH A 33 252 252 HOH HOH . O 7 HOH A 34 253 253 HOH HOH . O 7 HOH A 35 254 254 HOH HOH . O 7 HOH A 36 255 255 HOH HOH . O 7 HOH A 37 256 256 HOH HOH . O 7 HOH A 38 257 257 HOH HOH . O 7 HOH A 39 258 258 HOH HOH . O 7 HOH A 40 259 259 HOH HOH . O 7 HOH A 41 260 260 HOH HOH . O 7 HOH A 42 261 261 HOH HOH . O 7 HOH A 43 262 262 HOH HOH . O 7 HOH A 44 263 263 HOH HOH . O 7 HOH A 45 264 264 HOH HOH . O 7 HOH A 46 265 265 HOH HOH . O 7 HOH A 47 266 266 HOH HOH . O 7 HOH A 48 267 267 HOH HOH . O 7 HOH A 49 268 268 HOH HOH . O 7 HOH A 50 269 269 HOH HOH . O 7 HOH A 51 270 270 HOH HOH . O 7 HOH A 52 271 271 HOH HOH . O 7 HOH A 53 272 272 HOH HOH . O 7 HOH A 54 273 273 HOH HOH . O 7 HOH A 55 274 274 HOH HOH . O 7 HOH A 56 275 275 HOH HOH . O 7 HOH A 57 276 276 HOH HOH . O 7 HOH A 58 277 277 HOH HOH . O 7 HOH A 59 278 278 HOH HOH . O 7 HOH A 60 279 279 HOH HOH . O 7 HOH A 61 280 280 HOH HOH . O 7 HOH A 62 281 281 HOH HOH . O 7 HOH A 63 282 282 HOH HOH . O 7 HOH A 64 283 283 HOH HOH . O 7 HOH A 65 284 284 HOH HOH . O 7 HOH A 66 285 285 HOH HOH . O 7 HOH A 67 286 286 HOH HOH . O 7 HOH A 68 287 287 HOH HOH . O 7 HOH A 69 288 288 HOH HOH . O 7 HOH A 70 289 289 HOH HOH . O 7 HOH A 71 290 290 HOH HOH . O 7 HOH A 72 291 291 HOH HOH . O 7 HOH A 73 292 292 HOH HOH . O 7 HOH A 74 293 293 HOH HOH . O 7 HOH A 75 294 294 HOH HOH . O 7 HOH A 76 295 295 HOH HOH . O 7 HOH A 77 296 296 HOH HOH . O 7 HOH A 78 297 297 HOH HOH . O 7 HOH A 79 298 298 HOH HOH . O 7 HOH A 80 299 299 HOH HOH . O 7 HOH A 81 300 300 HOH HOH . O 7 HOH A 82 301 301 HOH HOH . O 7 HOH A 83 302 302 HOH HOH . O 7 HOH A 84 303 303 HOH HOH . O 7 HOH A 85 304 304 HOH HOH . O 7 HOH A 86 305 305 HOH HOH . O 7 HOH A 87 306 306 HOH HOH . O 7 HOH A 88 307 307 HOH HOH . O 7 HOH A 89 308 308 HOH HOH . O 7 HOH A 90 309 309 HOH HOH . O 7 HOH A 91 310 310 HOH HOH . O 7 HOH A 92 311 311 HOH HOH . O 7 HOH A 93 312 312 HOH HOH . O 7 HOH A 94 313 313 HOH HOH . O 7 HOH A 95 315 315 HOH HOH . O 7 HOH A 96 316 316 HOH HOH . O 7 HOH A 97 317 317 HOH HOH . O 7 HOH A 98 318 318 HOH HOH . O 7 HOH A 99 319 319 HOH HOH . O 7 HOH A 100 320 320 HOH HOH . O 7 HOH A 101 321 321 HOH HOH . O 7 HOH A 102 322 322 HOH HOH . O 7 HOH A 103 323 323 HOH HOH . O 7 HOH A 104 324 324 HOH HOH . O 7 HOH A 105 325 325 HOH HOH . O 7 HOH A 106 326 326 HOH HOH . O 7 HOH A 107 327 327 HOH HOH . O 7 HOH A 108 328 328 HOH HOH . O 7 HOH A 109 329 329 HOH HOH . O 7 HOH A 110 330 330 HOH HOH . O 7 HOH A 111 331 331 HOH HOH . P 7 HOH B 1 323 323 HOH HOH . P 7 HOH B 2 324 324 HOH HOH . P 7 HOH B 3 325 325 HOH HOH . P 7 HOH B 4 326 326 HOH HOH . P 7 HOH B 5 327 327 HOH HOH . P 7 HOH B 6 328 328 HOH HOH . P 7 HOH B 7 329 329 HOH HOH . P 7 HOH B 8 330 330 HOH HOH . P 7 HOH B 9 331 331 HOH HOH . P 7 HOH B 10 332 332 HOH HOH . P 7 HOH B 11 333 333 HOH HOH . P 7 HOH B 12 334 334 HOH HOH . P 7 HOH B 13 335 335 HOH HOH . P 7 HOH B 14 336 336 HOH HOH . P 7 HOH B 15 337 337 HOH HOH . P 7 HOH B 16 338 338 HOH HOH . P 7 HOH B 17 339 339 HOH HOH . P 7 HOH B 18 340 340 HOH HOH . P 7 HOH B 19 341 341 HOH HOH . P 7 HOH B 20 342 342 HOH HOH . P 7 HOH B 21 343 343 HOH HOH . P 7 HOH B 22 344 344 HOH HOH . P 7 HOH B 23 345 345 HOH HOH . P 7 HOH B 24 346 346 HOH HOH . P 7 HOH B 25 347 347 HOH HOH . P 7 HOH B 26 348 348 HOH HOH . P 7 HOH B 27 349 349 HOH HOH . P 7 HOH B 28 350 350 HOH HOH . P 7 HOH B 29 351 351 HOH HOH . P 7 HOH B 30 352 352 HOH HOH . P 7 HOH B 31 353 353 HOH HOH . P 7 HOH B 32 354 354 HOH HOH . P 7 HOH B 33 355 355 HOH HOH . P 7 HOH B 34 356 356 HOH HOH . P 7 HOH B 35 357 357 HOH HOH . P 7 HOH B 36 358 358 HOH HOH . P 7 HOH B 37 359 359 HOH HOH . P 7 HOH B 38 360 360 HOH HOH . P 7 HOH B 39 361 361 HOH HOH . P 7 HOH B 40 362 362 HOH HOH . P 7 HOH B 41 363 363 HOH HOH . P 7 HOH B 42 364 364 HOH HOH . P 7 HOH B 43 365 365 HOH HOH . P 7 HOH B 44 366 366 HOH HOH . P 7 HOH B 45 367 367 HOH HOH . P 7 HOH B 46 368 368 HOH HOH . P 7 HOH B 47 369 369 HOH HOH . P 7 HOH B 48 370 370 HOH HOH . P 7 HOH B 49 371 371 HOH HOH . P 7 HOH B 50 372 372 HOH HOH . P 7 HOH B 51 373 373 HOH HOH . P 7 HOH B 52 374 374 HOH HOH . P 7 HOH B 53 375 375 HOH HOH . P 7 HOH B 54 376 376 HOH HOH . P 7 HOH B 55 377 377 HOH HOH . P 7 HOH B 56 378 378 HOH HOH . P 7 HOH B 57 379 379 HOH HOH . P 7 HOH B 58 380 380 HOH HOH . P 7 HOH B 59 381 381 HOH HOH . P 7 HOH B 60 382 382 HOH HOH . P 7 HOH B 61 383 383 HOH HOH . P 7 HOH B 62 384 384 HOH HOH . P 7 HOH B 63 385 385 HOH HOH . P 7 HOH B 64 386 386 HOH HOH . P 7 HOH B 65 387 387 HOH HOH . P 7 HOH B 66 388 388 HOH HOH . P 7 HOH B 67 389 389 HOH HOH . P 7 HOH B 68 390 390 HOH HOH . P 7 HOH B 69 391 391 HOH HOH . P 7 HOH B 70 392 392 HOH HOH . P 7 HOH B 71 393 393 HOH HOH . P 7 HOH B 72 394 394 HOH HOH . P 7 HOH B 73 395 395 HOH HOH . P 7 HOH B 74 396 396 HOH HOH . P 7 HOH B 75 397 397 HOH HOH . P 7 HOH B 76 398 398 HOH HOH . P 7 HOH B 77 399 399 HOH HOH . P 7 HOH B 78 400 400 HOH HOH . P 7 HOH B 79 401 401 HOH HOH . P 7 HOH B 80 402 402 HOH HOH . P 7 HOH B 81 403 403 HOH HOH . P 7 HOH B 82 404 404 HOH HOH . P 7 HOH B 83 405 405 HOH HOH . P 7 HOH B 84 406 406 HOH HOH . P 7 HOH B 85 407 407 HOH HOH . P 7 HOH B 86 408 408 HOH HOH . P 7 HOH B 87 409 409 HOH HOH . P 7 HOH B 88 410 410 HOH HOH . P 7 HOH B 89 411 411 HOH HOH . P 7 HOH B 90 412 412 HOH HOH . P 7 HOH B 91 413 413 HOH HOH . P 7 HOH B 92 414 414 HOH HOH . P 7 HOH B 93 415 415 HOH HOH . P 7 HOH B 94 416 416 HOH HOH . P 7 HOH B 95 417 417 HOH HOH . P 7 HOH B 96 418 418 HOH HOH . P 7 HOH B 97 419 419 HOH HOH . P 7 HOH B 98 420 420 HOH HOH . P 7 HOH B 99 421 421 HOH HOH . P 7 HOH B 100 422 422 HOH HOH . P 7 HOH B 101 423 423 HOH HOH . P 7 HOH B 102 424 424 HOH HOH . P 7 HOH B 103 425 425 HOH HOH . P 7 HOH B 104 426 426 HOH HOH . P 7 HOH B 105 427 427 HOH HOH . P 7 HOH B 106 428 428 HOH HOH . P 7 HOH B 107 429 429 HOH HOH . P 7 HOH B 108 431 431 HOH HOH . P 7 HOH B 109 432 432 HOH HOH . P 7 HOH B 110 433 433 HOH HOH . P 7 HOH B 111 434 434 HOH HOH . P 7 HOH B 112 435 435 HOH HOH . P 7 HOH B 113 436 436 HOH HOH . P 7 HOH B 114 437 437 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 0.111 _atom_site.Cartn_y 9.496 _atom_site.Cartn_z 49.117 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 216 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 471 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #