data_3BHI # _model_server_result.job_id ypsKkARtsCBWJ_d6rH0Lcg _model_server_result.datetime_utc '2024-11-27 20:00:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3bhi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":309}' # _entry.id 3BHI # _exptl.entry_id 3BHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3BHI _cell.length_a 55.662 _cell.length_b 55.662 _cell.length_c 169.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3BHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 3BHI _atom_sites.fract_transf_matrix[1][1] 0.017966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 308 308 CL CL . C 3 NAP A 1 309 309 NAP NAP . D 4 HOH A 1 310 310 HOH HOH . D 4 HOH A 2 311 311 HOH HOH . D 4 HOH A 3 312 312 HOH HOH . D 4 HOH A 4 313 313 HOH HOH . D 4 HOH A 5 314 314 HOH HOH . D 4 HOH A 6 315 315 HOH HOH . D 4 HOH A 7 316 316 HOH HOH . D 4 HOH A 8 317 317 HOH HOH . D 4 HOH A 9 318 318 HOH HOH . D 4 HOH A 10 319 319 HOH HOH . D 4 HOH A 11 320 320 HOH HOH . D 4 HOH A 12 321 321 HOH HOH . D 4 HOH A 13 322 322 HOH HOH . D 4 HOH A 14 323 323 HOH HOH . D 4 HOH A 15 324 324 HOH HOH . D 4 HOH A 16 325 325 HOH HOH . D 4 HOH A 17 326 326 HOH HOH . D 4 HOH A 18 327 327 HOH HOH . D 4 HOH A 19 328 328 HOH HOH . D 4 HOH A 20 329 329 HOH HOH . D 4 HOH A 21 330 330 HOH HOH . D 4 HOH A 22 331 331 HOH HOH . D 4 HOH A 23 332 332 HOH HOH . D 4 HOH A 24 333 333 HOH HOH . D 4 HOH A 25 334 334 HOH HOH . D 4 HOH A 26 335 335 HOH HOH . D 4 HOH A 27 336 336 HOH HOH . D 4 HOH A 28 337 337 HOH HOH . D 4 HOH A 29 338 338 HOH HOH . D 4 HOH A 30 339 339 HOH HOH . D 4 HOH A 31 340 340 HOH HOH . D 4 HOH A 32 341 341 HOH HOH . D 4 HOH A 33 342 342 HOH HOH . D 4 HOH A 34 343 343 HOH HOH . D 4 HOH A 35 344 344 HOH HOH . D 4 HOH A 36 345 345 HOH HOH . D 4 HOH A 37 346 346 HOH HOH . D 4 HOH A 38 347 347 HOH HOH . D 4 HOH A 39 348 348 HOH HOH . D 4 HOH A 40 349 349 HOH HOH . D 4 HOH A 41 350 350 HOH HOH . D 4 HOH A 42 351 351 HOH HOH . D 4 HOH A 43 352 352 HOH HOH . D 4 HOH A 44 353 353 HOH HOH . D 4 HOH A 45 354 354 HOH HOH . D 4 HOH A 46 355 355 HOH HOH . D 4 HOH A 47 356 356 HOH HOH . D 4 HOH A 48 357 357 HOH HOH . D 4 HOH A 49 358 358 HOH HOH . D 4 HOH A 50 359 359 HOH HOH . D 4 HOH A 51 360 360 HOH HOH . D 4 HOH A 52 361 361 HOH HOH . D 4 HOH A 53 362 362 HOH HOH . D 4 HOH A 54 363 363 HOH HOH . D 4 HOH A 55 364 364 HOH HOH . D 4 HOH A 56 365 365 HOH HOH . D 4 HOH A 57 366 366 HOH HOH . D 4 HOH A 58 367 367 HOH HOH . D 4 HOH A 59 368 368 HOH HOH . D 4 HOH A 60 369 369 HOH HOH . D 4 HOH A 61 370 370 HOH HOH . D 4 HOH A 62 371 371 HOH HOH . D 4 HOH A 63 372 372 HOH HOH . D 4 HOH A 64 373 373 HOH HOH . D 4 HOH A 65 374 374 HOH HOH . D 4 HOH A 66 375 375 HOH HOH . D 4 HOH A 67 376 376 HOH HOH . D 4 HOH A 68 377 377 HOH HOH . D 4 HOH A 69 378 378 HOH HOH . D 4 HOH A 70 379 379 HOH HOH . D 4 HOH A 71 380 380 HOH HOH . D 4 HOH A 72 381 381 HOH HOH . D 4 HOH A 73 382 382 HOH HOH . D 4 HOH A 74 383 383 HOH HOH . D 4 HOH A 75 384 384 HOH HOH . D 4 HOH A 76 385 385 HOH HOH . D 4 HOH A 77 386 386 HOH HOH . D 4 HOH A 78 387 387 HOH HOH . D 4 HOH A 79 388 388 HOH HOH . D 4 HOH A 80 389 389 HOH HOH . D 4 HOH A 81 390 390 HOH HOH . D 4 HOH A 82 391 391 HOH HOH . D 4 HOH A 83 392 392 HOH HOH . D 4 HOH A 84 393 393 HOH HOH . D 4 HOH A 85 394 394 HOH HOH . D 4 HOH A 86 395 395 HOH HOH . D 4 HOH A 87 396 396 HOH HOH . D 4 HOH A 88 397 397 HOH HOH . D 4 HOH A 89 398 398 HOH HOH . D 4 HOH A 90 399 399 HOH HOH . D 4 HOH A 91 400 400 HOH HOH . D 4 HOH A 92 401 401 HOH HOH . D 4 HOH A 93 402 402 HOH HOH . D 4 HOH A 94 403 403 HOH HOH . D 4 HOH A 95 404 404 HOH HOH . D 4 HOH A 96 405 405 HOH HOH . D 4 HOH A 97 406 406 HOH HOH . D 4 HOH A 98 407 407 HOH HOH . D 4 HOH A 99 408 408 HOH HOH . D 4 HOH A 100 409 409 HOH HOH . D 4 HOH A 101 410 410 HOH HOH . D 4 HOH A 102 411 411 HOH HOH . D 4 HOH A 103 412 412 HOH HOH . D 4 HOH A 104 413 413 HOH HOH . D 4 HOH A 105 414 414 HOH HOH . D 4 HOH A 106 415 415 HOH HOH . D 4 HOH A 107 416 416 HOH HOH . D 4 HOH A 108 417 417 HOH HOH . D 4 HOH A 109 418 418 HOH HOH . D 4 HOH A 110 419 419 HOH HOH . D 4 HOH A 111 420 420 HOH HOH . D 4 HOH A 112 421 421 HOH HOH . D 4 HOH A 113 422 422 HOH HOH . D 4 HOH A 114 423 423 HOH HOH . D 4 HOH A 115 424 424 HOH HOH . D 4 HOH A 116 425 425 HOH HOH . D 4 HOH A 117 426 426 HOH HOH . D 4 HOH A 118 427 427 HOH HOH . D 4 HOH A 119 428 428 HOH HOH . D 4 HOH A 120 429 429 HOH HOH . D 4 HOH A 121 430 430 HOH HOH . D 4 HOH A 122 431 431 HOH HOH . D 4 HOH A 123 432 432 HOH HOH . D 4 HOH A 124 433 433 HOH HOH . D 4 HOH A 125 434 434 HOH HOH . D 4 HOH A 126 435 435 HOH HOH . D 4 HOH A 127 436 436 HOH HOH . D 4 HOH A 128 437 437 HOH HOH . D 4 HOH A 129 438 438 HOH HOH . D 4 HOH A 130 439 439 HOH HOH . D 4 HOH A 131 440 440 HOH HOH . D 4 HOH A 132 441 441 HOH HOH . D 4 HOH A 133 442 442 HOH HOH . D 4 HOH A 134 443 443 HOH HOH . D 4 HOH A 135 444 444 HOH HOH . D 4 HOH A 136 445 445 HOH HOH . D 4 HOH A 137 446 446 HOH HOH . D 4 HOH A 138 447 447 HOH HOH . D 4 HOH A 139 448 448 HOH HOH . D 4 HOH A 140 449 449 HOH HOH . D 4 HOH A 141 450 450 HOH HOH . D 4 HOH A 142 451 451 HOH HOH . D 4 HOH A 143 452 452 HOH HOH . D 4 HOH A 144 453 453 HOH HOH . D 4 HOH A 145 454 454 HOH HOH . D 4 HOH A 146 455 455 HOH HOH . D 4 HOH A 147 456 456 HOH HOH . D 4 HOH A 148 457 457 HOH HOH . D 4 HOH A 149 458 458 HOH HOH . D 4 HOH A 150 459 459 HOH HOH . D 4 HOH A 151 460 460 HOH HOH . D 4 HOH A 152 461 461 HOH HOH . D 4 HOH A 153 462 462 HOH HOH . D 4 HOH A 154 463 463 HOH HOH . D 4 HOH A 155 464 464 HOH HOH . D 4 HOH A 156 465 465 HOH HOH . D 4 HOH A 157 466 466 HOH HOH . D 4 HOH A 158 467 467 HOH HOH . D 4 HOH A 159 468 468 HOH HOH . D 4 HOH A 160 469 469 HOH HOH . D 4 HOH A 161 470 470 HOH HOH . D 4 HOH A 162 471 471 HOH HOH . D 4 HOH A 163 472 472 HOH HOH . D 4 HOH A 164 473 473 HOH HOH . D 4 HOH A 165 474 474 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 6.107 38.343 50.322 1 10.31 ? PA NAP 309 A 1 HETATM 2 O O1A NAP . . . C 3 5.305 39.27 49.544 1 15.73 ? O1A NAP 309 A 1 HETATM 3 O O2A NAP . . . C 3 7.389 38.867 50.828 1 8.54 ? O2A NAP 309 A 1 HETATM 4 O O5B NAP . . . C 3 5.35 37.843 51.614 1 13.1 ? O5B NAP 309 A 1 HETATM 5 C C5B NAP . . . C 3 6.013 36.968 52.58 1 10.54 ? C5B NAP 309 A 1 HETATM 6 C C4B NAP . . . C 3 5.126 36.869 53.853 1 7.25 ? C4B NAP 309 A 1 HETATM 7 O O4B NAP . . . C 3 5.883 36.166 54.854 1 11.87 ? O4B NAP 309 A 1 HETATM 8 C C3B NAP . . . C 3 4.828 38.227 54.421 1 7.63 ? C3B NAP 309 A 1 HETATM 9 O O3B NAP . . . C 3 3.506 38.307 55.012 1 4.81 ? O3B NAP 309 A 1 HETATM 10 C C2B NAP . . . C 3 5.857 38.364 55.564 1 11.82 ? C2B NAP 309 A 1 HETATM 11 O O2B NAP . . . C 3 5.382 39.368 56.572 1 14.69 ? O2B NAP 309 A 1 HETATM 12 C C1B NAP . . . C 3 5.929 36.911 56.042 1 8.33 ? C1B NAP 309 A 1 HETATM 13 N N9A NAP . . . C 3 7.149 36.735 56.891 1 9.65 ? N9A NAP 309 A 1 HETATM 14 C C8A NAP . . . C 3 8.464 36.919 56.664 1 8.94 ? C8A NAP 309 A 1 HETATM 15 N N7A NAP . . . C 3 9.179 36.614 57.747 1 6.47 ? N7A NAP 309 A 1 HETATM 16 C C5A NAP . . . C 3 8.281 36.332 58.712 1 11.5 ? C5A NAP 309 A 1 HETATM 17 C C6A NAP . . . C 3 8.359 36.032 60.114 1 11.24 ? C6A NAP 309 A 1 HETATM 18 N N6A NAP . . . C 3 9.557 35.971 60.807 1 5.7 ? N6A NAP 309 A 1 HETATM 19 N N1A NAP . . . C 3 7.176 35.774 60.717 1 10.2 ? N1A NAP 309 A 1 HETATM 20 C C2A NAP . . . C 3 5.996 35.803 60.127 1 9.22 ? C2A NAP 309 A 1 HETATM 21 N N3A NAP . . . C 3 5.892 36.124 58.855 1 8.52 ? N3A NAP 309 A 1 HETATM 22 C C4A NAP . . . C 3 7.012 36.361 58.146 1 10.02 ? C4A NAP 309 A 1 HETATM 23 O O3 NAP . . . C 3 6.49 37.035 49.467 1 11.92 ? O3 NAP 309 A 1 HETATM 24 P PN NAP . . . C 3 5.643 35.783 48.877 1 11.42 ? PN NAP 309 A 1 HETATM 25 O O1N NAP . . . C 3 6.226 35.569 47.562 1 9.27 ? O1N NAP 309 A 1 HETATM 26 O O2N NAP . . . C 3 4.149 36.017 49.043 1 13.5 ? O2N NAP 309 A 1 HETATM 27 O O5D NAP . . . C 3 6.215 34.6 49.836 1 15.24 ? O5D NAP 309 A 1 HETATM 28 C C5D NAP . . . C 3 5.415 33.629 50.532 1 13.72 ? C5D NAP 309 A 1 HETATM 29 C C4D NAP . . . C 3 5.913 32.227 50.29 1 12.77 ? C4D NAP 309 A 1 HETATM 30 O O4D NAP . . . C 3 5.984 31.985 48.843 1 11.07 ? O4D NAP 309 A 1 HETATM 31 C C3D NAP . . . C 3 7.341 32.289 50.806 1 13.66 ? C3D NAP 309 A 1 HETATM 32 O O3D NAP . . . C 3 7.62 31.065 51.445 1 13.91 ? O3D NAP 309 A 1 HETATM 33 C C2D NAP . . . C 3 8.163 32.259 49.505 1 12.56 ? C2D NAP 309 A 1 HETATM 34 O O2D NAP . . . C 3 9.402 31.59 49.781 1 9.8 ? O2D NAP 309 A 1 HETATM 35 C C1D NAP . . . C 3 7.253 31.349 48.614 1 11.26 ? C1D NAP 309 A 1 HETATM 36 N N1N NAP . . . C 3 7.575 31.4 47.17 1 10.78 ? N1N NAP 309 A 1 HETATM 37 C C2N NAP . . . C 3 7.413 32.607 46.476 1 8.94 ? C2N NAP 309 A 1 HETATM 38 C C3N NAP . . . C 3 7.72 32.721 45.145 1 11.39 ? C3N NAP 309 A 1 HETATM 39 C C7N NAP . . . C 3 7.525 34.019 44.399 1 9.97 ? C7N NAP 309 A 1 HETATM 40 O O7N NAP . . . C 3 6.918 35.109 44.89 1 15.28 ? O7N NAP 309 A 1 HETATM 41 N N7N NAP . . . C 3 7.998 34.002 43.18 1 12.33 ? N7N NAP 309 A 1 HETATM 42 C C4N NAP . . . C 3 8.196 31.62 44.445 1 8.9 ? C4N NAP 309 A 1 HETATM 43 C C5N NAP . . . C 3 8.363 30.436 45.148 1 10.04 ? C5N NAP 309 A 1 HETATM 44 C C6N NAP . . . C 3 8.111 30.313 46.521 1 11.34 ? C6N NAP 309 A 1 HETATM 45 P P2B NAP . . . C 3 5.95 40.86 56.495 1 11.84 ? P2B NAP 309 A 1 HETATM 46 O O1X NAP . . . C 3 7.3 40.781 55.844 1 16.48 ? O1X NAP 309 A 1 HETATM 47 O O2X NAP . . . C 3 5.998 41.429 57.936 1 11.06 ? O2X NAP 309 A 1 HETATM 48 O O3X NAP . . . C 3 4.892 41.843 55.602 1 13.74 ? O3X NAP 309 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #